vOTU vOTU-127003

vOTU: vOTU-127003

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-127003
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-06927 → vOTU-127003
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium lactatiformans
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1417840
Biosample ID	SAMEA4545343
Genome length (bp)	34,763 bps
CheckV completeness	79.18% (Medium-quality)
CDS count	51
CDS density	93.82%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium lactatiformans	Total connections	8	Host agreement	75
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 79.18)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1417840_1	phrog_10091	92.4	3.9e-27	holin	lysis
UniRef90	UHGV-1417840_1	UniRef90_A0A7G9WJ43	127.0	1.59e-36	Phage holin	N/A
eggNOG-mapper	UHGV-1417840_1	445975.COLSTE_02144	106.0	3.29e-29	Bacteriophage holin	N/A
Pfam	UHGV-1417840_1	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-1417840_1	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-1417840_1	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1417840_1	COG5546	N/A	N/A	N/A	N/A
PHROG	UHGV-1417840_2	phrog_937	49.8	0.000000000000022	hemolysin	other
eggNOG-mapper	UHGV-1417840_2	445972.ANACOL_01873	108.0	3.72e-29	N/A	N/A
KOfam	UHGV-1417840_3	K13277	56.4	3e-16	epr; minor extracellular protease Epr [EC:3.4.21.-]	N/A
UniRef90	UHGV-1417840_3	UniRef90_UPI00164A3975	143.0	7.94e-38	S8 family serine peptidase	N/A
eggNOG-mapper	UHGV-1417840_3	1121085.AUCI01000014_gene344	57.0	0.00000506	Belongs to the peptidase S8 family	N/A
Pfam	UHGV-1417840_3	PF00082	N/A	N/A	Subtilase family	Peptidase_S8
Pfam	UHGV-1417840_3	PF00395	N/A	N/A	S-layer homology domain	SLH
COG	UHGV-1417840_3	COG1404	N/A	N/A	Serine protease, subtilisin family	N/A
structural_annotation	UHGV-1417840_3	PF00395,TIGR03921,COG1404	N/A	N/A	N/A	N/A
PHROG	UHGV-1417840_5	phrog_35419	48.1	0.00000000000019	tail fiber protein	tail
eggNOG-mapper	UHGV-1417840_5	913865.DOT_2883	81.6	0.0000000000000028	exo-alpha-(2->6)-sialidase activity	N/A
COG	UHGV-1417840_5	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
structural_annotation	UHGV-1417840_6	PF16408,NF033510	N/A	N/A	N/A	N/A
PHROG	UHGV-1417840_7	phrog_10898	272.7	0	N/A	unknown function
UniRef90	UHGV-1417840_7	UniRef90_A0A7U3NJT3	184.0	0	Putative Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1417840_7	717606.PaecuDRAFT_2136	73.9	0.00000000000221	S-layer homology domain	N/A
COG	UHGV-1417840_7	COG1520	N/A	N/A	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	N/A
structural_annotation	UHGV-1417840_7	PF19081,PF15418,MF_01905,NF032891,COG3291	N/A	N/A	N/A	N/A
PHROG	UHGV-1417840_9	phrog_12105	93.1	1.3e-27	N/A	unknown function
eggNOG-mapper	UHGV-1417840_9	1128111.HMPREF0870_01752	62.0	0.0000000944	N/A	N/A
PHROG	UHGV-1417840_10	phrog_371	127.8	8.5e-38	major head protein	head and packaging
UniRef90	UHGV-1417840_10	UniRef90_R6TFU9	276.0	0	Mu-like_gpT domain-containing protein	N/A
eggNOG-mapper	UHGV-1417840_10	1226322.HMPREF1545_03848	325.0	0	N/A	N/A
Pfam	UHGV-1417840_10	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
structural_annotation	UHGV-1417840_10	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1417840_11	phrog_24113	94.5	6.4e-28	N/A	unknown function
eggNOG-mapper	UHGV-1417840_11	1226322.HMPREF1545_03847	81.3	1.09e-17	N/A	N/A
structural_annotation	UHGV-1417840_11	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-1417840_12	phrog_35275	165.0	0	N/A	unknown function
eggNOG-mapper	UHGV-1417840_12	1226322.HMPREF1545_03846	108.0	2.23e-24	N/A	N/A
PHROG	UHGV-1417840_14	phrog_156	265.3	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1417840_14	1519439.JPJG01000060_gene1886	639.0	0	N/A	N/A
structural_annotation	UHGV-1417840_14	PF16510,MF_04120,TIGR01542,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1417840_15	K06909	230.5	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1417840_15	phrog_3717	214.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-1417840_15	UniRef90_UPI001105ADB4	629.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1417840_15	1226322.HMPREF1545_03843	605.0	0	phage Terminase large subunit	N/A
Pfam	UHGV-1417840_15	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-1417840_15	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1417840_15	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1417840_15	PF04466,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1417840_16	phrog_606	46.2	0.00000000000043	terminase small subunit	head and packaging
Pfam	UHGV-1417840_16	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1417840_16	PF16677	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1417840_17	1226322.HMPREF1545_00288	69.7	0.0000000000000405	N/A	N/A
PHROG	UHGV-1417840_21	phrog_38832	48.7	0.000000000000069	N/A	unknown function
eggNOG-mapper	UHGV-1417840_21	665956.HMPREF1032_03087	95.9	4.09e-23	N/A	N/A
PHROG	UHGV-1417840_22	phrog_37865	44.7	1.2e-19	N/A	unknown function
PHROG	UHGV-1417840_23	phrog_924	48.5	0.00000000000011	N/A	unknown function
UniRef90	UHGV-1417840_23	UniRef90_UPI0011DE1BA5	58.2	0.0000000298	N/A	N/A
Pfam	UHGV-1417840_23	PF04448	N/A	N/A	N/A	DUF551
UniRef90	UHGV-1417840_24	UniRef90_UPI001C3A10B1	64.7	0.0000000000422	Zinc ribbon domain-containing protein	N/A
eggNOG-mapper	UHGV-1417840_24	1226322.HMPREF1545_00023	55.8	0.0000000238	N/A	N/A
PHROG	UHGV-1417840_25	phrog_757	178.0	0	DNA methyltransferase	other
UniRef90	UHGV-1417840_25	UniRef90_A0A3A6EPW1	399.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1417840_25	742733.HMPREF9469_01835	248.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1417840_25	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1417840_25	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1417840_26	phrog_244	71.2	1.8e-20	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1417840_26	UniRef90_A0A841R0Q1	138.0	4.89e-40	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-1417840_26	1123250.KB908417_gene653	151.0	0	N/A	N/A
structural_annotation	UHGV-1417840_26	PF01870,MF_01490,COG1591	N/A	N/A	N/A	N/A
KOfam	UHGV-1417840_27	K02315	125.7	4.5e-37	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1417840_27	phrog_50	120.8	1.2e-35	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1417840_27	UniRef90_A0A6A8VIC3	314.0	0	IstB_IS21 domain-containing protein	N/A
eggNOG-mapper	UHGV-1417840_27	445972.ANACOL_01829	222.0	0	N/A	N/A
Pfam	UHGV-1417840_27	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-1417840_27	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1417840_27	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-1417840_28	phrog_678	65.1	1.3e-18	replication initiation O-like	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1417840_28	796940.HMPREF9628_00167	100.0	3.89e-22	N/A	N/A
COG	UHGV-1417840_28	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1417840_28	PF01978,MF_01819,TIGR01610,COG5625	N/A	N/A	N/A	N/A
KOfam	UHGV-1417840_29	K03111	129.2	4.8e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1417840_29	phrog_44	134.4	7.6e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1417840_29	UniRef90_R6LVK0	194.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1417840_29	693746.OBV_12860	181.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1417840_29	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1417840_29	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1417840_29	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1417840_29	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1417840_29	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1417840_30	phrog_398	171.7	0	N/A	unknown function
UniRef90	UHGV-1417840_30	UniRef90_UPI00137B6F1E	339.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-1417840_30	1485543.JMME01000021_gene802	192.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-1417840_30	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-1417840_30	PF16784	N/A	N/A	N/A	N/A
PHROG	UHGV-1417840_31	phrog_155	107.4	1.4e-31	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1417840_31	UniRef90_UPI000834FCC7	187.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-1417840_31	158189.SpiBuddy_1836	173.0	0	single-stranded DNA binding	N/A
Pfam	UHGV-1417840_31	PF04404	N/A	N/A	ERF superfamily	ERF
COG	UHGV-1417840_31	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1417840_31	PF04404,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1417840_36	phrog_18248	59.1	6.2e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1417840_36	UniRef90_A0A847W1V2	87.8	1.82e-21	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1417840_36	394503.Ccel_3076	77.0	1.94e-17	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1417840_36	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1417840_36	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1417840_36	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1417840_37	phrog_8	53.5	0.0000000000000056	transcriptional regulator	transcription regulation
UniRef90	UHGV-1417840_37	UniRef90_UPI001C020D87	84.0	1.26e-18	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1417840_37	198094.BA_3829	59.7	0.000000000855	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1417840_37	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1417840_37	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1417840_37	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1417840_40	K07075	61.8	1.6e-17	N/A	N/A
UniRef90	UHGV-1417840_40	UniRef90_UPI001D0E1B6C	145.0	1.44334e-43	nucleotidyltransferase domain-containing protein	N/A
eggNOG-mapper	UHGV-1417840_40	411483.FAEPRAA2165_00449	136.0	3.06e-39	Nucleotidyltransferase substrate binding protein like	N/A
Pfam	UHGV-1417840_40	PF18765	N/A	N/A	Polymerase beta, Nucleotidyltransferase	Polbeta
COG	UHGV-1417840_40	COG1669	N/A	N/A	Predicted nucleotidyltransferase MJ0435	N/A
structural_annotation	UHGV-1417840_40	PF18765,NF010309,COG1669	N/A	N/A	N/A	N/A
UniRef90	UHGV-1417840_41	UniRef90_UPI001D0EDE7D	176.0	0	nucleotidyltransferase substrate binding protein	N/A
eggNOG-mapper	UHGV-1417840_41	1378168.N510_00089	117.0	6.11e-31	TIGRFAM nucleotidyltransferase substrate binding protein, HI0074 family	N/A
Pfam	UHGV-1417840_41	PF08780	N/A	N/A	Nucleotidyltransferase substrate binding protein like	NTase_sub_bind
NCBIFam	UHGV-1417840_41	TIGR01987.1	N/A	N/A	HI0074 family nucleotidyltransferase substrate-binding subunit	N/A
COG	UHGV-1417840_41	COG1669	N/A	N/A	Predicted nucleotidyltransferase MJ0435	N/A
structural_annotation	UHGV-1417840_41	PF08780,TIGR01987,COG2445	N/A	N/A	N/A	N/A
KOfam	UHGV-1417840_42	K14059	128.0	1.1e-37	int; integrase	N/A
PHROG	UHGV-1417840_42	phrog_1	129.7	2.7e-38	integrase	integration and excision
UniRef90	UHGV-1417840_42	UniRef90_A0A2Z4QB94	381.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1417840_42	1514668.JOOA01000001_gene242	132.0	6.28e-33	Phage integrase family	N/A
Pfam	UHGV-1417840_42	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1417840_42	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1417840_42	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1417840_43	UniRef90_A0A8F0WD75	77.0	0.0000000000000136	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-1417840_43	1378168.N510_03079	137.0	4.83e-38	N/A	N/A
eggNOG-mapper	UHGV-1417840_45	1408437.JNJN01000043_gene802	179.0	0	N/A	N/A
PHROG	UHGV-1417840_46	phrog_16490	254.9	0	N/A	unknown function
eggNOG-mapper	UHGV-1417840_46	1408437.JNJN01000043_gene803	264.0	0	N/A	N/A
eggNOG-mapper	UHGV-1417840_48	445972.ANACOL_01878	89.0	2.84e-20	N/A	N/A
PHROG	UHGV-1417840_49	phrog_36	43.4	0.0000000000061	transcriptional regulator	transcription regulation
Pfam	UHGV-1417840_49	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
COG	UHGV-1417840_49	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-1417840_49	PF04545,MF_00674,NF008895,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1417840_51	phrog_22978	864.0	0	N/A	unknown function
eggNOG-mapper	UHGV-1417840_51	693746.OBV_01590	420.0	0	N/A	N/A
Pfam	UHGV-1417840_51	PF18814	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1417840	Yes	34,763	54	79	1