vOTU vOTU-127975

vOTU: vOTU-127975

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-127975
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00007 → vGENUS-00125 → vOTU-127975
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0024614
Biosample ID	SAMEA4765641
Genome length (bp)	41,458 bps
CheckV completeness	71.95% (Medium-quality)
CDS count	74
CDS density	88.49%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	206	Host agreement	97.09
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 71.95)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0024614_1	phrog_15946	88.7	8.1e-26	N/A	unknown function
eggNOG-mapper	UHGV-0024614_1	1445613.JALM01000017_gene5891	59.7	0.00000000415	N/A	N/A
structural_annotation	UHGV-0024614_2	PF10922	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024614_4	TIGR03826	N/A	N/A	N/A	N/A
Pfam	UHGV-0024614_6	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0024614_6	PF13443,TIGR02684,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024614_7	PF14143	N/A	N/A	N/A	N/A
PHROG	UHGV-0024614_9	phrog_155	148.3	4.76441e-44	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024614_9	UniRef90_E2ZNS9	272.0	0	Erf family protein	N/A
eggNOG-mapper	UHGV-0024614_9	748224.HMPREF9436_03360	272.0	0	ERF superfamily	N/A
Pfam	UHGV-0024614_9	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0024614_9	PF04404,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-0024614_10	K03111	117.8	1.5e-34	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0024614_10	phrog_44	128.1	6.6e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024614_10	UniRef90_A0A6N7TNV3	155.0	1.4013e-45	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0024614_10	748224.HMPREF9436_03359	150.0	8.40779e-45	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0024614_10	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0024614_10	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0024614_10	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0024614_10	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0024614_10	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0024614_11	K00558	152.8	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0024614_11	phrog_116	191.7	0	DNA methyltransferase	other
UniRef90	UHGV-0024614_11	UniRef90_D4JYK0	659.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0024614_11	718252.FP2_16350	659.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0024614_11	oMTase_00004	219.7	0	orphan methyltransferase	RM
Pfam	UHGV-0024614_11	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0024614_11	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0024614_11	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0024614_11	PF00145,TIGR00675	N/A	N/A	N/A	N/A
PHROG	UHGV-0024614_13	phrog_35094	90.2	2.9e-26	N/A	unknown function
eggNOG-mapper	UHGV-0024614_13	457424.BFAG_02409	120.0	1.89e-34	N/A	N/A
PHROG	UHGV-0024614_15	phrog_843	63.0	3.2e-18	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024614_15	UniRef90_UPI001159D907	115.0	1.68e-29	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-0024614_15	929506.CbC4_1203	108.0	2.53e-27	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
structural_annotation	UHGV-0024614_15	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024614_17	PF11998,COG5420	N/A	N/A	N/A	N/A
Pfam	UHGV-0024614_22	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0024614_23	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0024614_27	K21686	51.5	0.0000000000000087	prpR; XRE family transcriptional regulator, fatty acid utilization regulator	N/A
PHROG	UHGV-0024614_27	phrog_11947	46.4	0.00000000000043	N/A	unknown function
eggNOG-mapper	UHGV-0024614_27	584708.Apau_0460	51.6	0.00000386	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0024614_27	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0024614_27	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0024614_27	PF01381,MF_00535,TIGR03070,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024614_30	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0024614_31	phrog_924	42.7	0.000000000011	N/A	unknown function
UniRef90	UHGV-0024614_31	UniRef90_A0A6G5YDC2	53.5	0.0000000677	N/A	N/A
eggNOG-mapper	UHGV-0024614_31	1433287.X808_8690	47.4	0.00000364	N/A	N/A
Pfam	UHGV-0024614_31	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0024614_31	NF041588	N/A	N/A	N/A	N/A
Pfam	UHGV-0024614_33	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-0024614_33	PF14354	N/A	N/A	N/A	N/A
PHROG	UHGV-0024614_34	phrog_15768	113.8	2.5e-34	N/A	unknown function
UniRef90	UHGV-0024614_34	UniRef90_E2ZNS6	101.0	1.32e-22	N/A	N/A
eggNOG-mapper	UHGV-0024614_34	748224.HMPREF9436_03357	101.0	2.21e-23	N/A	N/A
Pfam	UHGV-0024614_34	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0024614_34	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0024614_35	K02314	205.9	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0024614_35	phrog_19	210.6	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024614_35	UniRef90_UPI001CBC4B63	422.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0024614_35	1203606.HMPREF1526_01325	160.0	8.26065e-42	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0024614_35	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0024614_35	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0024614_35	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0024614_36	1121865.OMW_01950	77.4	9.77e-18	N/A	N/A
structural_annotation	UHGV-0024614_36	PF17516,NF007197	N/A	N/A	N/A	N/A
PHROG	UHGV-0024614_38	phrog_1709	59.4	6.3e-17	N/A	unknown function
eggNOG-mapper	UHGV-0024614_38	1280686.AUKE01000002_gene1328	73.6	7.74e-16	N/A	N/A
PHROG	UHGV-0024614_41	phrog_434	43.8	0.000000000004	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0024614_41	1408437.JNJN01000010_gene1241	53.5	0.0000000364	N/A	N/A
NCBIFam	UHGV-0024614_45	NF038353.1	N/A	N/A	FxLYD domain-containing protein	N/A
COG	UHGV-0024614_45	COG0515	N/A	N/A	Serine/threonine protein kinase	N/A
structural_annotation	UHGV-0024614_45	PF11906,PF09624,MF_00791,NF038353,NF033903,COG5633	N/A	N/A	N/A	N/A
KOfam	UHGV-0024614_46	K07741	66.2	1.1e-18	antB; anti-repressor protein	N/A
PHROG	UHGV-0024614_46	phrog_130	227.7	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0024614_46	UniRef90_A0A8D4D1X2	266.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0024614_46	1289596.M1PKL6_9CAUD	249.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0024614_46	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0024614_46	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
structural_annotation	UHGV-0024614_46	PF02498,PF03374,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
Pfam	UHGV-0024614_47	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
structural_annotation	UHGV-0024614_47	PF01402,NF041284,COG4710	N/A	N/A	N/A	N/A
UniRef90	UHGV-0024614_49	UniRef90_A0A374HMV1	51.6	0.000000872	HTH cro/C1-type domain-containing protein	N/A
KOfam	UHGV-0024614_50	K14060	94.4	1.5e-27	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0024614_50	phrog_125	130.6	1.1e-38	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024614_50	UniRef90_UPI001A9B5A42	244.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0024614_50	1443122.Z958_05795	160.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0024614_50	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0024614_50	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0024614_50	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024614_51	NF009949	N/A	N/A	N/A	N/A
PHROG	UHGV-0024614_54	phrog_38	155.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0024614_54	UniRef90_A0A3D4KYF7	974.0	0	DOD-type homing endonuclease domain-containing protein	N/A
eggNOG-mapper	UHGV-0024614_54	1232453.BAIF02000058_gene1623	391.0	0	TIGRFAM Phage	N/A
COG	UHGV-0024614_54	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024614_54	PF05203,PF17289,MF_04147,MF_01420,NF033889,NF007072,COG5362,COG1372	N/A	N/A	N/A	N/A
PHROG	UHGV-0024614_56	phrog_64	146.3	1.49939e-43	portal protein	head and packaging
UniRef90	UHGV-0024614_56	UniRef90_A0A371ILT4	332.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0024614_56	1121866.AUGK01000003_gene1429	273.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0024614_56	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0024614_56	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0024614_59	phrog_29	169.6	0	major head protein	head and packaging
UniRef90	UHGV-0024614_59	UniRef90_A0A2Z4QBB4	346.0	0	Major capsid protein E	N/A
eggNOG-mapper	UHGV-0024614_59	476272.RUMHYD_01946	233.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0024614_59	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0024614_59	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0024614_60	UniRef90_R6N215	82.4	3.72e-18	Phage QLRG family putative DNA packaging	N/A
structural_annotation	UHGV-0024614_60	TIGR01560	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0024614_61	1298920.KI911353_gene2656	50.4	0.00000463	N/A	N/A
structural_annotation	UHGV-0024614_61	PF19586,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024614_63	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0024614_64	phrog_158	46.2	0.0000000000008	major tail protein	tail
UniRef90	UHGV-0024614_64	UniRef90_UPI001D087591	117.0	4.36e-31	phage tail protein	N/A
eggNOG-mapper	UHGV-0024614_64	1449343.JQLQ01000002_gene1514	55.1	0.000000206	Phage tail tube protein, TTP	N/A
structural_annotation	UHGV-0024614_64	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0024614_65	UniRef90_A0A847YX95	70.1	0.000000000000288	N/A	N/A
eggNOG-mapper	UHGV-0024614_65	1123263.AUKY01000015_gene1618	62.4	0.0000000000488	N/A	N/A
Pfam	UHGV-0024614_65	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0024614_65	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0024614_66	1121333.JMLH01000047_gene1011	78.2	1.38e-16	N/A	N/A
PHROG	UHGV-0024614_67	phrog_28775	169.6	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0024614_67	1121866.AUGK01000003_gene1437	191.0	0	phage tail tape measure protein	N/A
COG	UHGV-0024614_67	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-0024614_68	phrog_1194	86.3	2.9e-25	N/A	unknown function
eggNOG-mapper	UHGV-0024614_68	665956.HMPREF1032_03629	58.2	0.00000000555	N/A	N/A
Pfam	UHGV-0024614_68	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0024614_68	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0024614_69	phrog_314	103.7	3.3e-32	homing endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024614_69	UniRef90_A0A7X9GBM3	108.0	1.47e-25	GIY-YIG nuclease family protein	N/A
eggNOG-mapper	UHGV-0024614_69	476272.RUMHYD_01755	89.4	7.97e-19	GIY-YIG type nucleases (URI domain)	N/A
Pfam	UHGV-0024614_69	PF01541	N/A	N/A	GIY-YIG catalytic domain	GIY-YIG
Pfam	UHGV-0024614_69	PF07460	N/A	N/A	NUMOD3 motif	NUMOD3
NCBIFam	UHGV-0024614_69	TIGR01453.1	N/A	N/A	group I intron endonuclease	N/A
COG	UHGV-0024614_69	COG3860	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024614_69	PF19835,PF07460,TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-0024614_70	phrog_13879	234.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0024614_70	324057.Pjdr2_1554	150.0	8.8e-37	N/A	N/A
structural_annotation	UHGV-0024614_70	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0024614_71	phrog_18725	68.6	8.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-0024614_71	1226322.HMPREF1545_00062	90.5	8.17e-21	N/A	N/A
PHROG	UHGV-0024614_73	phrog_23587	89.3	4.7e-26	N/A	unknown function
eggNOG-mapper	UHGV-0024614_73	748224.HMPREF9436_01176	53.1	0.00000297	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0024614	Yes	41,458	49	72	1