vOTU vOTU-128208

vOTU: vOTU-128208

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-128208
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00120 → vSUBFAM-02648 → vGENUS-04547 → vOTU-128208
Host lineage	Bacteria → Actinobacteriota → Actinomycetia → Actinomycetales → Bifidobacteriaceae → Bifidobacterium → Bifidobacterium pseudocatenulatum
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0017509
Biosample ID	SAMEA4765618
Genome length (bp)	93,431 bps
CheckV completeness	53.91% (Medium-quality)
CDS count	128
CDS density	92.20%
tRNA count	3
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Actinobacteriota → Actinomycetia → Actinomycetales → Bifidobacteriaceae → Bifidobacterium → Bifidobacterium pseudocatenulatum	Total connections	1	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 53.91)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0017509_1	phrog_421	143.4	1.3004e-42	N/A	unknown function
UniRef90	UHGV-0017509_1	UniRef90_A0A7U9X7X4	194.0	0	N/A	N/A
eggNOG-mapper	UHGV-0017509_1	97139.C824_00143	141.0	7.45e-39	N/A	N/A
Pfam	UHGV-0017509_1	PF10979	N/A	N/A	N/A	DUF2786
structural_annotation	UHGV-0017509_1	PF10979	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017509_3	MF_00962,NF005644,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-0017509_4	phrog_3339	312.4	0	homing endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017509_4	UniRef90_A0A5S9HY64	203.0	0	Putative Hef-like homing endonuclease	N/A
eggNOG-mapper	UHGV-0017509_4	1147094.H6X3J6_9CAUD	174.0	4.90454e-44	regulation of transcription, DNA-dependent	N/A
structural_annotation	UHGV-0017509_4	PF04480,PF12568,PF05265,MF_02210,NF007025,NF007294,COG3818,COG3727	N/A	N/A	N/A	N/A
Pfam	UHGV-0017509_7	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
structural_annotation	UHGV-0017509_10	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0017509_16	411461.DORFOR_01178	89.0	1.42e-19	N/A	N/A
eggNOG-mapper	UHGV-0017509_21	97139.C824_01019	58.9	0.0000000166	N/A	N/A
COG	UHGV-0017509_21	COG3600	N/A	N/A	N/A	N/A
PHROG	UHGV-0017509_27	phrog_31560	61.6	5.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-0017509_27	1232447.BAHW02000015_gene1021	81.3	0.00000000000000671	N/A	N/A
UniRef90	UHGV-0017509_31	UniRef90_A0A2N5PCA4	113.0	2.2e-28	N/A	N/A
eggNOG-mapper	UHGV-0017509_31	97139.C824_00130	119.0	2e-32	Protein conserved in bacteria	N/A
Pfam	UHGV-0017509_31	PF07866	N/A	N/A	N/A	DUF1653
COG	UHGV-0017509_31	COG4728	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0017509_43	1280698.AUJS01000007_gene1050	60.1	0.0000000062	N/A	N/A
PHROG	UHGV-0017509_48	phrog_1382	58.4	6.7e-17	N/A	unknown function
eggNOG-mapper	UHGV-0017509_48	1095750.HMPREF9970_0323	50.4	0.0000000706	N/A	N/A
NCBIFam	UHGV-0017509_48	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-0017509_48	NF040910	N/A	N/A	N/A	N/A
PHROG	UHGV-0017509_49	phrog_1382	45.1	0.000000000001	N/A	unknown function
eggNOG-mapper	UHGV-0017509_49	1140002.I570_03996	49.7	0.0000000536	N/A	N/A
NCBIFam	UHGV-0017509_49	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-0017509_49	NF040910	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0017509_51	1353529.M899_2645	58.2	0.00000662	cell wall surface anchor family protein	N/A
COG	UHGV-0017509_51	COG3210	N/A	N/A	Large exoprotein involved in heme utilization or adhesion	N/A
PHROG	UHGV-0017509_52	phrog_8378	40.6	0.000000000013	tail fiber protein	tail
eggNOG-mapper	UHGV-0017509_52	768710.DesyoDRAFT_1133	80.9	0.0000000000000965	tail collar domain protein	N/A
COG	UHGV-0017509_52	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0017509_53	PF20010	N/A	N/A	N/A	N/A
PHROG	UHGV-0017509_54	phrog_35541	72.9	1.3e-22	N/A	unknown function
structural_annotation	UHGV-0017509_55	PF13780	N/A	N/A	N/A	N/A
KOfam	UHGV-0017509_56	K03465	136.0	2.70002e-41	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	N/A
PHROG	UHGV-0017509_56	phrog_85	64.2	1.4e-28	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017509_56	UniRef90_A0A7M1RV71	195.0	0	Thymidylate synthase	N/A
eggNOG-mapper	UHGV-0017509_56	397290.C810_05227	134.0	3.46e-35	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	N/A
Pfam	UHGV-0017509_56	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
NCBIFam	UHGV-0017509_56	TIGR02170.1	N/A	N/A	FAD-dependent thymidylate synthase	N/A
COG	UHGV-0017509_56	COG1351	N/A	N/A	Thymidylate synthase ThyX, FAD-dependent family	N/A
structural_annotation	UHGV-0017509_56	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
KOfam	UHGV-0017509_57	K01972	253.0	0	E6.5.1.2, ligA, ligB; DNA ligase (NAD+) [EC:6.5.1.2]	N/A
PHROG	UHGV-0017509_57	phrog_3869	324.4	0	NAD-dependent DNA ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017509_57	UniRef90_A0A2M9WUQ3	215.0	0	DNA ligase (NAD(+))	N/A
eggNOG-mapper	UHGV-0017509_57	443254.Marpi_0231	170.0	3.45981e-42	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA	N/A
Pfam	UHGV-0017509_57	PF01653	N/A	N/A	NAD-dependent DNA ligase adenylation domain	DNA_ligase_aden
Pfam	UHGV-0017509_57	PF03120	N/A	N/A	NAD-dependent DNA ligase OB-fold domain	DNA_ligase_OB
COG	UHGV-0017509_57	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
structural_annotation	UHGV-0017509_57	PF01653,PF03120,PF00533,MF_01588,NF005932,COG0272	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0017509_59	1256908.HMPREF0373_01597	48.9	0.00000102	N/A	N/A
KOfam	UHGV-0017509_61	K19171	104.0	1.2e-30	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-0017509_61	phrog_77	94.9	3.4e-28	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017509_61	UniRef90_U2M633	255.0	0	Putative DNA sulfur modification protein DndD	N/A
eggNOG-mapper	UHGV-0017509_61	1304872.JAGC01000009_gene792	61.2	0.00000036	N/A	N/A
Pfam	UHGV-0017509_61	PF13304	N/A	N/A	AAA domain, putative AbiEii toxin, Type IV TA system	AAA_21
Pfam	UHGV-0017509_61	PF02463	N/A	N/A	RecF/RecN/SMC N terminal domain	SMC_N
structural_annotation	UHGV-0017509_61	PF13166,MF_00449,NF002244,COG0419	N/A	N/A	N/A	N/A
KOfam	UHGV-0017509_63	K03091	122.5	4.9e-36	sigH; RNA polymerase sporulation-specific sigma factor	N/A
PHROG	UHGV-0017509_63	phrog_351	68.2	1.6e-31	RNA polymerase sigma factor	transcription regulation
UniRef90	UHGV-0017509_63	UniRef90_A0A110A6Y1	80.1	7.95e-16	RNA polymerase sigma factor SigS	N/A
eggNOG-mapper	UHGV-0017509_63	140626.JHWB01000013_gene727	67.4	0.0000000000189	Belongs to the sigma-70 factor family	N/A
Pfam	UHGV-0017509_63	PF04542	N/A	N/A	Sigma-70 region 2	Sigma70_r2
Pfam	UHGV-0017509_63	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
NCBIFam	UHGV-0017509_63	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-0017509_63	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-0017509_63	PF04542,PF08281,MF_00962,NF004471,COG1191	N/A	N/A	N/A	N/A
KOfam	UHGV-0017509_64	K03657	281.8	0	uvrD, pcrA; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]	N/A
PHROG	UHGV-0017509_64	phrog_1967	266.7	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017509_64	UniRef90_U2KYN9	320.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0017509_64	411473.RUMCAL_00297	320.0	0	ATP-dependent DNA helicase	N/A
PADLOC	UHGV-0017509_64	GajB_00015	157.5	0	UrvD helicase	Gabija
Pfam	UHGV-0017509_64	PF00580	N/A	N/A	UvrD/REP helicase N-terminal domain	UvrD-helicase
Pfam	UHGV-0017509_64	PF13361	N/A	N/A	UvrD-like helicase C-terminal domain	UvrD_C
COG	UHGV-0017509_64	COG0210	N/A	N/A	Superfamily I DNA or RNA helicase	N/A
structural_annotation	UHGV-0017509_64	PF01443,MF_01920,TIGR01073,COG0210	N/A	N/A	N/A	N/A
PHROG	UHGV-0017509_66	phrog_14016	48.8	0.000000000000062	N/A	unknown function
Pfam	UHGV-0017509_66	PF13489	N/A	N/A	Methyltransferase domain	Methyltransf_23
PHROG	UHGV-0017509_69	phrog_1271	41.2	1.4e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
KOfam	UHGV-0017509_70	K03698	40.1	0.000000000044	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	N/A
PHROG	UHGV-0017509_70	phrog_28876	113.6	1.4e-33	metal-dependent phosphohydrolase	other
UniRef90	UHGV-0017509_70	UniRef90_A0A8J6IP18	137.0	1.72e-36	HD domain-containing protein	N/A
eggNOG-mapper	UHGV-0017509_70	411473.RUMCAL_00307	192.0	0	metal-dependent phosphohydrolase, HD sub domain	N/A
COG	UHGV-0017509_70	COG3481	N/A	N/A	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	N/A
structural_annotation	UHGV-0017509_70	PF07514,MF_01427,NF010007,COG3481	N/A	N/A	N/A	N/A
PHROG	UHGV-0017509_71	phrog_1129	60.2	2.5e-17	holin	lysis
UniRef90	UHGV-0017509_71	UniRef90_UPI001D093805	91.3	4.35e-22	phage holin family protein	N/A
eggNOG-mapper	UHGV-0017509_71	1007096.BAGW01000035_gene1305	80.1	2.01e-18	N/A	N/A
Pfam	UHGV-0017509_71	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0017509_71	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0017509_73	phrog_843	63.9	2e-18	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017509_73	UniRef90_U2MD58	184.0	0	Holliday junction resolvase RecU	N/A
Pfam	UHGV-0017509_73	PF03838	N/A	N/A	Recombination protein U	RecU
COG	UHGV-0017509_73	COG3331	N/A	N/A	Penicillin-binding protein-related factor A, putative recombinase	N/A
structural_annotation	UHGV-0017509_73	PF03838,MF_00130,NF002582,COG3331	N/A	N/A	N/A	N/A
KOfam	UHGV-0017509_77	K14440	247.0	0	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0017509_77	phrog_62	292.3	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017509_77	UniRef90_U2KY82	603.0	0	Protein, SNF2 family	N/A
eggNOG-mapper	UHGV-0017509_77	411473.RUMCAL_00324	603.0	0	SNF2 family	N/A
PADLOC	UHGV-0017509_77	ZorD1_00005	141.2	7.10038e-42	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0017509_77	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0017509_77	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0017509_77	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0017509_77	PF00176,PF00271,PF07443,MF_01821,NF041790,TIGR01158,COG0553	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017509_78	PF18760	N/A	N/A	N/A	N/A
KOfam	UHGV-0017509_79	K01449	49.4	0.000000000000088	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
Pfam	UHGV-0017509_79	PF07486	N/A	N/A	Cell Wall Hydrolase	Hydrolase_2
COG	UHGV-0017509_79	COG3773	N/A	N/A	Cell wall hydrolase CwlJ, involved in spore germination	N/A
structural_annotation	UHGV-0017509_80	PF11031,MF_04104,NF041673,COG2203	N/A	N/A	N/A	N/A
PHROG	UHGV-0017509_83	phrog_20259	58.6	9.4e-17	N/A	unknown function
eggNOG-mapper	UHGV-0017509_83	1211640.K4K5Z9_9CAUD	50.8	0.00000859	N/A	N/A
structural_annotation	UHGV-0017509_84	PF00210,MF_01441,NF006975,COG0783	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017509_86	PF20387	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0017509_87	742818.HMPREF9451_01773	98.2	1.09e-20	N/A	N/A
PHROG	UHGV-0017509_89	phrog_4776	99.6	3.3e-29	N/A	unknown function
eggNOG-mapper	UHGV-0017509_89	411467.BACCAP_02198	128.0	1.27e-32	N/A	N/A
PHROG	UHGV-0017509_92	phrog_3339	342.0	0	homing endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017509_92	UniRef90_A0A7L8ZJJ9	181.0	1.4013e-45	Putative homing endonuclease	N/A
eggNOG-mapper	UHGV-0017509_92	1110702.G8GIS0_9CAUD	203.0	0	N/A	N/A
structural_annotation	UHGV-0017509_92	PF12568,PF04480,MF_02018,NF007025,TIGR00632,COG3818,COG3727	N/A	N/A	N/A	N/A
PHROG	UHGV-0017509_93	phrog_3339	296.4	0	homing endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017509_93	UniRef90_A0A7L8G7P5	161.0	5.82e-39	Homing endonuclease EDxHD	N/A
eggNOG-mapper	UHGV-0017509_93	722417.D5GV46_9CAUD	203.0	0	regulation of transcription, DNA-dependent	N/A
structural_annotation	UHGV-0017509_93	PF12568,PF04480,MF_02018,NF007025,TIGR00632,COG3818,COG3727	N/A	N/A	N/A	N/A
PHROG	UHGV-0017509_94	phrog_138	59.1	5.1e-17	major head protein	head and packaging
structural_annotation	UHGV-0017509_94	PF07068,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0017509_95	phrog_207	83.5	1.5e-25	head maturation protease	head and packaging
eggNOG-mapper	UHGV-0017509_95	869662.M4PQ72_9CAUD	64.7	0.00000000478	Pfam:Peptidase_S77	N/A
Pfam	UHGV-0017509_95	PF03420	N/A	N/A	Prohead core protein serine protease	Peptidase_S77
structural_annotation	UHGV-0017509_95	PF03420,TIGR01543,COG3740	N/A	N/A	N/A	N/A
UniRef90	UHGV-0017509_100	UniRef90_U2M6A1	426.0	0	Phage tail protein	N/A
structural_annotation	UHGV-0017509_100	PF09684,TIGR02242,COG4385	N/A	N/A	N/A	N/A
PHROG	UHGV-0017509_101	phrog_26861	119.6	1.6e-35	N/A	unknown function
UniRef90	UHGV-0017509_101	UniRef90_A0A143XYD2	195.0	0	Single-stranded DNA-binding protein ssb	N/A
eggNOG-mapper	UHGV-0017509_101	483218.BACPEC_01931	192.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0017509_101	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0017509_101	NF004476.0	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0017509_101	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0017509_101	PF00436,PF13567,MF_00984,NF004476,COG0629	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017509_102	PF04865,PF21379,MF_04102,TIGR02243,COG3299	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017509_103	PF04965,TIGR03357,COG3628	N/A	N/A	N/A	N/A
PHROG	UHGV-0017509_105	phrog_59	46.2	0.00000000000035	HNH endonuclease	DNA, RNA and nucleotide metabolism
Pfam	UHGV-0017509_105	PF13392	N/A	N/A	HNH endonuclease	HNH_3
PHROG	UHGV-0017509_106	phrog_14030	111.6	5.4e-33	N/A	unknown function
UniRef90	UHGV-0017509_106	UniRef90_R5BP16	137.0	2.57e-34	SH3b domain-containing protein	N/A
eggNOG-mapper	UHGV-0017509_106	411468.CLOSCI_01513	145.0	4.39e-38	N/A	N/A
Pfam	UHGV-0017509_106	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
PHROG	UHGV-0017509_107	phrog_959	49.4	0.000000000000032	HNH endonuclease	DNA, RNA and nucleotide metabolism
Pfam	UHGV-0017509_107	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
eggNOG-mapper	UHGV-0017509_108	742765.HMPREF9457_03017	140.0	1.81e-34	peptidase	N/A
COG	UHGV-0017509_108	COG4942	N/A	N/A	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	N/A
structural_annotation	UHGV-0017509_111	PF21683,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0017509_112	phrog_20637	95.2	5.6e-28	N/A	unknown function
UniRef90	UHGV-0017509_112	UniRef90_UPI001570E1BB	94.7	3.52e-21	N/A	N/A
eggNOG-mapper	UHGV-0017509_112	478749.BRYFOR_08548	100.0	2.44e-24	N/A	N/A
Pfam	UHGV-0017509_112	PF18907	N/A	N/A	N/A	DUF5662
structural_annotation	UHGV-0017509_112	PF18907	N/A	N/A	N/A	N/A
PHROG	UHGV-0017509_117	phrog_7145	47.3	0.00000000000026	baseplate wedge subunit	tail
structural_annotation	UHGV-0017509_118	PF19266,TIGR01611,COG3499	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017509_123	PF12322,COG4518	N/A	N/A	N/A	N/A
KOfam	UHGV-0017509_125	K22227	41.4	0.000000000013	ahbD; AdoMet-dependent heme synthase [EC:1.3.98.6]	N/A
UniRef90	UHGV-0017509_125	UniRef90_A0A174JJR1	237.0	0	Radical SAM/Cys-rich domain protein	N/A
eggNOG-mapper	UHGV-0017509_125	349161.Dred_0516	55.1	0.00000673	PFAM Radical SAM	N/A
COG	UHGV-0017509_125	COG0535	N/A	N/A	Radical SAM superfamily maturase, SkfB/NifB/PqqE family	N/A
structural_annotation	UHGV-0017509_125	MF_01225_A,NF012164,COG0641	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0017509	Yes	93,431	37	54	1