vOTU vOTU-128660

vOTU: vOTU-128660

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-128660
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00007 → vGENUS-09150 → vOTU-128660
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0359857
Biosample ID	SAMEA4813857
Genome length (bp)	36,200 bps
CheckV completeness	62.84% (Medium-quality)
CDS count	53
CDS density	85.99%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	217	Host agreement	96.77
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 62.84)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0359857_1	phrog_843	47.9	0.00000000000014	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0359857_1	UniRef90_UPI0004D5FA77	70.9	0.00000000000153	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-0359857_1	929506.CbC4_1203	67.0	0.00000000000754	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
structural_annotation	UHGV-0359857_1	PF03838,MF_00130,NF002584,COG3331	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0359857_4	MF_00085,NF003076,COG0231	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0359857_6	PF16677	N/A	N/A	N/A	N/A
UniRef90	UHGV-0359857_7	UniRef90_UPI0012DD33A2	248.0	0	restriction endonuclease subunit M	N/A
eggNOG-mapper	UHGV-0359857_7	1291050.JAGE01000001_gene2058	181.0	0	restriction endonuclease	N/A
PADLOC	UHGV-0359857_7	MTase_II_00176	145.5	0	Type II methyltransferase	RM
COG	UHGV-0359857_7	COG1002	N/A	N/A	Type II restriction/modification system, endonuclease and methylase domains	N/A
PHROG	UHGV-0359857_8	phrog_3136	151.7	1.4013e-45	N/A	unknown function
UniRef90	UHGV-0359857_8	UniRef90_UPI001CBCD733	171.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0359857_8	394503.Ccel_3165	52.4	0.00000172	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0359857_8	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0359857_8	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0359857_14	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0359857_15	phrog_599	44.3	0.0000000000039	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-0359857_15	269482.Bcep1808_1151	51.6	0.000000764	N/A	N/A
Pfam	UHGV-0359857_15	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0359857_15	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0359857_15	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0359857_15	NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-0359857_16	phrog_15768	104.8	9.4e-31	N/A	unknown function
UniRef90	UHGV-0359857_16	UniRef90_A0A6N7WKT0	90.9	1.01e-18	N/A	N/A
eggNOG-mapper	UHGV-0359857_16	748224.HMPREF9436_03357	85.9	1.83e-17	N/A	N/A
Pfam	UHGV-0359857_16	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0359857_16	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0359857_17	K02314	212.1	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0359857_17	phrog_19	219.1	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0359857_17	UniRef90_UPI001CBC4B63	419.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0359857_17	1203606.HMPREF1526_01325	162.0	2.1594e-42	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0359857_17	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0359857_17	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0359857_17	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0359857_19	phrog_1709	60.6	2.7e-17	N/A	unknown function
eggNOG-mapper	UHGV-0359857_19	500632.CLONEX_01053	85.9	8.79e-21	N/A	N/A
structural_annotation	UHGV-0359857_21	PF17340	N/A	N/A	N/A	N/A
COG	UHGV-0359857_23	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0359857_27	PF09624,PF14263,MF_00791,NF038353,TIGR02588,COG4885	N/A	N/A	N/A	N/A
PHROG	UHGV-0359857_28	phrog_463	65.1	1e-18	anti-repressor	transcription regulation
UniRef90	UHGV-0359857_28	UniRef90_UPI001C2426FA	138.0	5.19e-36	phage antirepressor Ant	N/A
eggNOG-mapper	UHGV-0359857_28	445972.ANACOL_01862	112.0	5.96e-27	Phage antirepressor protein KilAC domain	N/A
Pfam	UHGV-0359857_28	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-0359857_28	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0359857_28	PF03374,PF02498,COG3645,COG3617	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0359857_29	PF19807,NF041793,COG4877	N/A	N/A	N/A	N/A
KOfam	UHGV-0359857_31	K06400	216.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0359857_31	phrog_95	208.1	0	integrase	integration and excision
UniRef90	UHGV-0359857_31	UniRef90_A0A3D4G6V8	357.0	0	Resolvase	N/A
eggNOG-mapper	UHGV-0359857_31	1157490.EL26_02935	137.0	3.15e-34	Recombinase	N/A
Pfam	UHGV-0359857_31	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0359857_31	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-0359857_31	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0359857_31	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0359857_32	1410670.JHXF01000014_gene1980	61.6	0.00000000114	recombinase activity	N/A
COG	UHGV-0359857_32	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0359857_32	PF02796,PF15653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0359857_33	NF009949	N/A	N/A	N/A	N/A
PHROG	UHGV-0359857_34	phrog_3675	79.9	2.3e-23	N/A	unknown function
UniRef90	UHGV-0359857_34	UniRef90_UPI001D08FCA4	109.0	6.39e-29	YjcQ family protein	N/A
eggNOG-mapper	UHGV-0359857_34	1235802.C823_04879	114.0	1.13e-31	YjcQ protein	N/A
Pfam	UHGV-0359857_34	PF09639	N/A	N/A	YjcQ protein	YjcQ
structural_annotation	UHGV-0359857_34	PF09639,TIGR04176,COG2345	N/A	N/A	N/A	N/A
PHROG	UHGV-0359857_35	phrog_38	155.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0359857_35	UniRef90_A0A3D4KYF7	968.0	0	DOD-type homing endonuclease domain-containing protein	N/A
eggNOG-mapper	UHGV-0359857_35	1232453.BAIF02000058_gene1623	392.0	0	TIGRFAM Phage	N/A
COG	UHGV-0359857_35	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0359857_35	PF05203,PF17289,MF_04147,MF_01420,NF033889,NF007072,COG5362,COG1372	N/A	N/A	N/A	N/A
PHROG	UHGV-0359857_37	phrog_64	146.1	1.79366e-43	portal protein	head and packaging
UniRef90	UHGV-0359857_37	UniRef90_A0A371ILT4	332.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0359857_37	1121866.AUGK01000003_gene1429	276.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0359857_37	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0359857_37	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0359857_40	phrog_909	40.6	0.000000000036	major head protein	head and packaging
PHROG	UHGV-0359857_41	phrog_29	181.7	0	major head protein	head and packaging
UniRef90	UHGV-0359857_41	UniRef90_A0A2Z4QBB4	377.0	0	Major capsid protein E	N/A
eggNOG-mapper	UHGV-0359857_41	1347368.HG964404_gene4993	263.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0359857_41	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0359857_41	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0359857_42	UniRef90_R6N215	82.4	3.72e-18	Phage QLRG family putative DNA packaging	N/A
structural_annotation	UHGV-0359857_42	TIGR01560	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0359857_43	1298920.KI911353_gene2656	53.5	0.000000314	N/A	N/A
structural_annotation	UHGV-0359857_43	PF19586,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0359857_44	397290.C810_01411	53.9	0.00000131	N/A	N/A
structural_annotation	UHGV-0359857_45	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0359857_46	phrog_158	45.8	0.0000000000011	major tail protein	tail
UniRef90	UHGV-0359857_46	UniRef90_UPI001D087591	115.0	3.53e-30	phage tail protein	N/A
eggNOG-mapper	UHGV-0359857_46	1449343.JQLQ01000002_gene1514	59.3	0.00000000522	Phage tail tube protein, TTP	N/A
structural_annotation	UHGV-0359857_46	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0359857_47	UniRef90_A0A847YX95	70.1	0.000000000000288	N/A	N/A
eggNOG-mapper	UHGV-0359857_47	1123263.AUKY01000015_gene1618	61.2	0.000000000137	N/A	N/A
Pfam	UHGV-0359857_47	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0359857_47	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0359857_48	1121333.JMLH01000047_gene1011	76.3	7.76e-16	N/A	N/A
PHROG	UHGV-0359857_49	phrog_1535	147.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0359857_49	UniRef90_A0A318EME6	157.0	8.15e-35	Phage-related protein	N/A
eggNOG-mapper	UHGV-0359857_49	1121866.AUGK01000003_gene1437	196.0	0	phage tail tape measure protein	N/A
COG	UHGV-0359857_49	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-0359857_50	phrog_1194	82.9	3.2e-24	N/A	unknown function
eggNOG-mapper	UHGV-0359857_50	665956.HMPREF1032_03629	56.2	0.0000000285	N/A	N/A
Pfam	UHGV-0359857_50	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0359857_50	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0359857_51	phrog_13879	227.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0359857_51	1122919.KB905559_gene1344	158.0	2.38e-38	N/A	N/A
Pfam	UHGV-0359857_51	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0359857_51	PF14594,PF19789,PF03256,PF09134,NF033848,COG3500,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0359857_52	phrog_18725	69.2	6.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-0359857_52	1226322.HMPREF1545_00062	80.5	5.74e-17	N/A	N/A
PHROG	UHGV-0359857_53	phrog_9534	51.0	0.000000000000022	head protein	head and packaging
eggNOG-mapper	UHGV-0359857_53	748224.HMPREF9436_00405	120.0	3.26e-28	domain, Protein	N/A
COG	UHGV-0359857_53	COG5492	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0359857	Yes	36,200	48	63	1