vOTU vOTU-128818

vOTU: vOTU-128818

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-128818
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00005 → vGENUS-01621 → vOTU-128818
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83
Host range breadth	Genus
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1420547
Biosample ID	N/A
Genome length (bp)	22,982 bps
CheckV completeness	54.59% (Medium-quality)
CDS count	41
CDS density	95.97%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83	Total connections	123	Host agreement	82.93
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 54.59)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1420547_1	K03111	107.3	2.3e-31	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1420547_1	phrog_44	104.1	1.6e-30	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1420547_1	UniRef90_A0A350TKS2	143.0	7.61045e-42	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1420547_1	1226322.HMPREF1545_04080	138.0	1.14e-40	Single-strand binding protein family	N/A
Pfam	UHGV-1420547_1	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1420547_1	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1420547_1	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
PHROG	UHGV-1420547_2	phrog_15768	55.8	5.7e-16	N/A	unknown function
eggNOG-mapper	UHGV-1420547_2	1410650.JHWL01000003_gene2848	60.8	0.0000000227	N/A	N/A
Pfam	UHGV-1420547_2	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1420547_2	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-1420547_3	phrog_9804	169.2	0	N/A	unknown function
UniRef90	UHGV-1420547_3	UniRef90_UPI0015C5D332	202.0	0	replicative helicase loader/inhibitor	N/A
eggNOG-mapper	UHGV-1420547_3	1121344.JHZO01000003_gene981	205.0	0	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-1420547_3	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-1420547_3	PF11417	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1420547_5	TIGR00122,COG1654	N/A	N/A	N/A	N/A
KOfam	UHGV-1420547_7	K01160	71.5	1.8e-20	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1420547_7	phrog_34	61.3	1.6e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1420547_7	UniRef90_UPI0018ABA1B6	160.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1420547_7	796940.HMPREF9628_00163	115.0	3.14e-31	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1420547_7	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1420547_7	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1420547_7	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1420547_10	K14440	57.4	2.5e-26	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-1420547_10	phrog_62	199.9	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1420547_10	UniRef90_A0A845MVG4	622.0	0	Helicase	N/A
eggNOG-mapper	UHGV-1420547_10	394503.Ccel_3060	523.0	0	SNF2 family N-terminal domain	N/A
Pfam	UHGV-1420547_10	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-1420547_10	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1420547_10	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-1420547_10	PF06862,MF_01821,NF003426,COG0553	N/A	N/A	N/A	N/A
KOfam	UHGV-1420547_11	K24451	134.4	6.6e-40	zim; modification methylase	N/A
PHROG	UHGV-1420547_11	phrog_67	108.2	5.9e-32	DNA methyltransferase	other
UniRef90	UHGV-1420547_11	UniRef90_A0A845MWG4	529.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1420547_11	1120971.AUCA01000053_gene371	397.0	0	DNA methylase	N/A
PADLOC	UHGV-1420547_11	MTase_II_00139	109.5	4.3e-32	Type II methyltransferase	RM
Pfam	UHGV-1420547_11	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1420547_11	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1420547_11	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1420547_12	phrog_22529	116.1	1.4e-34	N/A	unknown function
UniRef90	UHGV-1420547_12	UniRef90_A0A810Q1V0	201.0	0	3D domain-containing protein	N/A
eggNOG-mapper	UHGV-1420547_12	411463.EUBVEN_00667	106.0	3.08e-26	3D domain	N/A
Pfam	UHGV-1420547_12	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-1420547_12	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-1420547_12	PF06725,NF040670,COG3584	N/A	N/A	N/A	N/A
PHROG	UHGV-1420547_17	phrog_3136	130.8	4.1e-39	N/A	unknown function
UniRef90	UHGV-1420547_17	UniRef90_UPI001CBCD733	123.0	3.95e-32	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1420547_17	97139.C824_00742	70.9	0.000000000000503	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-1420547_17	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1420547_17	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1420547_18	phrog_599	41.2	0.000000000031	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-1420547_18	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-1420547_18	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
structural_annotation	UHGV-1420547_18	PF14354,TIGR03655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1420547_23	693746.OBV_18010	130.0	1.45e-36	N/A	N/A
structural_annotation	UHGV-1420547_23	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1420547_24	phrog_606	81.4	1e-23	terminase small subunit	head and packaging
UniRef90	UHGV-1420547_24	UniRef90_UPI00195648BB	171.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1420547_24	397290.C810_05185	143.0	9.95062e-42	DNA-packaging protein gp3	N/A
Pfam	UHGV-1420547_24	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1420547_24	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-1420547_25	K06909	386.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1420547_25	phrog_3717	163.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-1420547_25	UniRef90_A0A2U1BEH4	748.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1420547_25	33035.JPJF01000106_gene3136	460.0	0	Terminase small subunit	N/A
Pfam	UHGV-1420547_25	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1420547_25	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1420547_25	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1420547_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1420547_25	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1420547_26	phrog_533	397.2	0	portal protein	head and packaging
UniRef90	UHGV-1420547_26	UniRef90_A0A2U1BEK0	723.0	0	A118 family predicted phage portal protein	N/A
eggNOG-mapper	UHGV-1420547_26	1226322.HMPREF1545_00044	698.0	0	N/A	N/A
Pfam	UHGV-1420547_26	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1420547_26	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1420547_28	phrog_581	291.8	0	minor head protein	head and packaging
UniRef90	UHGV-1420547_28	UniRef90_A0A1C5N7V1	592.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-1420547_28	1226322.HMPREF1545_00046	419.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1420547_28	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-1420547_28	PF15542	N/A	N/A	Bacterial toxin 50	Ntox50
COG	UHGV-1420547_28	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1420547_28	PF06152,PF15542,TIGR01641,COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1420547_29	PF07073,MF_00436,NF037951,COG4568	N/A	N/A	N/A	N/A
PHROG	UHGV-1420547_31	phrog_2303	55.6	6e-16	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-1420547_31	1226322.HMPREF1545_00049	181.0	0	N/A	N/A
PHROG	UHGV-1420547_32	phrog_10	168.2	0	major head protein	head and packaging
UniRef90	UHGV-1420547_32	UniRef90_A0A2U1BEF2	519.0	0	HK97 family phage major capsid protein	N/A
eggNOG-mapper	UHGV-1420547_32	1226322.HMPREF1545_00050	480.0	0	Phage capsid family	N/A
Pfam	UHGV-1420547_32	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-1420547_32	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
NCBIFam	UHGV-1420547_32	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1420547_32	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1420547_32	PF05065,PF13620,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1420547_33	phrog_541	110.5	9e-33	head-tail adaptor	connector
eggNOG-mapper	UHGV-1420547_33	642492.Clole_0822	68.2	0.00000000000098	N/A	N/A
PHROG	UHGV-1420547_34	phrog_3366	88.3	7.4e-26	N/A	unknown function
eggNOG-mapper	UHGV-1420547_34	1226322.HMPREF1545_00053	147.0	1.55544e-43	N/A	N/A
structural_annotation	UHGV-1420547_34	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-1420547_35	phrog_556	74.5	1.1e-21	minor head protein	head and packaging
UniRef90	UHGV-1420547_35	UniRef90_A0A2U1BEM0	187.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-1420547_35	1226322.HMPREF1545_00054	152.0	1.4013e-45	Minor capsid protein	N/A
Pfam	UHGV-1420547_35	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1420547_35	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1420547_36	phrog_3266	57.6	1.8e-16	tail completion	connector
eggNOG-mapper	UHGV-1420547_36	1232443.BAIA02000078_gene24	187.0	0	N/A	N/A
structural_annotation	UHGV-1420547_36	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1420547_37	phrog_3099	90.1	2.6e-26	N/A	unknown function
eggNOG-mapper	UHGV-1420547_37	1226322.HMPREF1545_00056	244.0	0	N/A	N/A
structural_annotation	UHGV-1420547_37	TIGR02126	N/A	N/A	N/A	N/A
PHROG	UHGV-1420547_38	phrog_11299	62.9	5.1e-18	N/A	unknown function
eggNOG-mapper	UHGV-1420547_38	693746.OBV_18160	153.0	0	N/A	N/A
structural_annotation	UHGV-1420547_38	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1420547_39	phrog_706	118.9	3.8e-35	N/A	unknown function
UniRef90	UHGV-1420547_39	UniRef90_UPI00164D7633	221.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1420547_39	1235797.C816_04184	207.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1420547_39	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1420547_39	PF06854	N/A	N/A	N/A	N/A
Pfam	UHGV-1420547_40	PF12869	N/A	N/A	tRNA_anti-like	tRNA_anti-like
PHROG	UHGV-1420547_41	phrog_1535	89.4	4.6e-27	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1420547_41	693746.OBV_18190	230.0	0	domain protein	N/A
COG	UHGV-1420547_41	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1420547_41	PF02050,NF006545	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1420547	Yes	22,982	53	55	1