vOTU vOTU-128852

vOTU: vOTU-128852

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-128852
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00239 → vGENUS-11638 → vOTU-128852
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0190760
Biosample ID	N/A
Genome length (bp)	21,174 bps
CheckV completeness	58.82% (Medium-quality)
CDS count	28
CDS density	93.67%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955	Total connections	1718	Host agreement	86.85
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955	Total connections	56	Host agreement	87.5

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 58.82)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0190760_1	UniRef90_UPI0018998E94	532.0	0	InlB B-repeat-containing protein	N/A
eggNOG-mapper	UHGV-0190760_1	877414.ATWA01000064_gene1973	61.2	0.000000143	Leucine-rich repeat (LRR) protein	N/A
NCBIFam	UHGV-0190760_1	TIGR01167.1	N/A	N/A	LPXTG cell wall anchor domain-containing protein	N/A
COG	UHGV-0190760_1	COG4964	N/A	N/A	Flp pilus assembly protein, secretin CpaC	N/A
PHROG	UHGV-0190760_2	phrog_6660	63.9	1.7e-18	N/A	unknown function
UniRef90	UHGV-0190760_2	UniRef90_A0A374US74	721.0	0	CYTH domain-containing protein	N/A
eggNOG-mapper	UHGV-0190760_2	246199.CUS_4928	317.0	0	CYTH	N/A
Pfam	UHGV-0190760_2	PF13521	N/A	N/A	AAA domain	AAA_28
COG	UHGV-0190760_2	COG2954	N/A	N/A	CYTH domain, found in class IV adenylate cyclase and various triphosphatases	N/A
UniRef90	UHGV-0190760_4	UniRef90_A0A174N9H8	67.4	0.0000000000895	Putative zinc finger/helix-turn-helix protein, YgiT family	N/A
eggNOG-mapper	UHGV-0190760_4	203119.Cthe_3313	54.7	0.000000257	Helix-turn-helix	N/A
COG	UHGV-0190760_4	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
PHROG	UHGV-0190760_5	phrog_199	71.2	1.1e-20	holin	lysis
UniRef90	UHGV-0190760_5	UniRef90_UPI00164BAF69	221.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0190760_5	1160721.RBI_I01565	161.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0190760_5	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0190760_5	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0190760_5	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0190760_5	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0190760_6	K07273	188.8	0	acm; lysozyme	N/A
PHROG	UHGV-0190760_6	phrog_291	169.9	0	endolysin	lysis
UniRef90	UHGV-0190760_6	UniRef90_R6NXV5	458.0	0	Glycoside Hydrolase Family 25-like lysozyme/endolysin	N/A
eggNOG-mapper	UHGV-0190760_6	1120933.ATUY01000004_gene1004	166.0	0	lysozyme activity	N/A
Pfam	UHGV-0190760_6	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0190760_6	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0190760_6	PF01183,TIGR04303,COG3757,COG5492	N/A	N/A	N/A	N/A
Pfam	UHGV-0190760_7	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
PHROG	UHGV-0190760_8	phrog_1067	120.5	1.4e-35	minor head protein	head and packaging
UniRef90	UHGV-0190760_8	UniRef90_A0A348ZBV6	213.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0190760_8	1160721.RBI_I01574	125.0	1.78e-28	Prophage endopeptidase tail	N/A
Pfam	UHGV-0190760_8	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0190760_8	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0190760_8	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0190760_8	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0190760_9	phrog_33	83.9	3.3e-24	distal tail protein Dit	tail
UniRef90	UHGV-0190760_9	UniRef90_UPI00189E4294	92.8	3.74e-19	phage tail family protein	N/A
eggNOG-mapper	UHGV-0190760_9	1160721.RBI_I01575	99.4	2.11e-22	Phage tail protein	N/A
COG	UHGV-0190760_9	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0190760_9	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0190760_10	phrog_23464	250.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0190760_10	665950.HMPREF1025_02660	182.0	1.4013e-45	phage tail tape measure protein	N/A
COG	UHGV-0190760_10	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0190760_10	COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0190760_13	phrog_885	159.8	0	major tail protein	tail
UniRef90	UHGV-0190760_13	UniRef90_A0A3D3W9F4	171.0	0	CBM_X2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0190760_13	411465.PEPMIC_00741	174.0	0	N/A	N/A
structural_annotation	UHGV-0190760_13	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0190760_14	PF12691	N/A	N/A	N/A	N/A
UniRef90	UHGV-0190760_15	UniRef90_UPI001A9B6FBF	172.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0190760_15	642492.Clole_0747	134.0	1.24e-38	N/A	N/A
structural_annotation	UHGV-0190760_15	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0190760_16	phrog_1951	88.7	4e-26	head-tail adaptor	connector
UniRef90	UHGV-0190760_16	UniRef90_A0A374MZF9	153.0	0	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-0190760_16	768704.Desmer_4460	64.7	0.00000000000409	head-tail adaptor	N/A
NCBIFam	UHGV-0190760_16	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0190760_16	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0190760_16	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0190760_17	phrog_5223	61.0	1.5e-17	neck protein	connector
UniRef90	UHGV-0190760_17	UniRef90_UPI0019613678	59.3	0.00000000498	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0190760_17	931626.Awo_c31020	54.3	0.0000000265	N/A	N/A
structural_annotation	UHGV-0190760_17	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0190760_18	phrog_10	155.9	0	major head protein	head and packaging
UniRef90	UHGV-0190760_18	UniRef90_A0A374N9V9	590.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0190760_18	1280689.AUJC01000011_gene1521	342.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0190760_18	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0190760_18	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0190760_18	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0190760_18	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0190760_19	K01358	123.6	2.3e-36	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0190760_19	phrog_94	185.2	0	head maturation protease	head and packaging
UniRef90	UHGV-0190760_19	UniRef90_A0A374NBM3	379.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0190760_19	1203606.HMPREF1526_00979	173.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0190760_19	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0190760_19	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0190760_19	PF00574,MF_00444,NF011091,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0190760_20	phrog_21498	284.2	0	N/A	unknown function
UniRef90	UHGV-0190760_20	UniRef90_C7MM70	236.0	0	ParB-like nuclease	N/A
eggNOG-mapper	UHGV-0190760_20	469378.Ccur_02830	236.0	0	DNA binding	N/A
COG	UHGV-0190760_20	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0190760_20	PF05869,TIGR01712	N/A	N/A	N/A	N/A
PHROG	UHGV-0190760_21	phrog_12	174.1	0	portal protein	head and packaging
UniRef90	UHGV-0190760_21	UniRef90_A0A374NAE1	656.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0190760_21	626523.GCWU000342_01027	385.0	0	Portal protein	N/A
Pfam	UHGV-0190760_21	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0190760_21	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0190760_21	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0190760_22	phrog_9	396.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0190760_22	UniRef90_A0A374NB45	899.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0190760_22	1235793.C809_01917	725.0	0	Phage Terminase	N/A
Pfam	UHGV-0190760_22	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0190760_22	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0190760_22	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0190760_22	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0190760_23	phrog_1066	114.3	6.1e-34	N/A	unknown function
eggNOG-mapper	UHGV-0190760_23	1203606.HMPREF1526_00982	95.9	4.09e-24	N/A	N/A
PHROG	UHGV-0190760_24	phrog_119	50.9	0.000000000000021	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0190760_24	UniRef90_A0A374N9T6	162.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0190760_24	1235793.C809_01915	124.0	6.15e-35	HNH endonuclease	N/A
Pfam	UHGV-0190760_24	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0190760_24	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0190760_25	phrog_8	50.2	0.000000000000055	transcriptional regulator	transcription regulation
UniRef90	UHGV-0190760_25	UniRef90_A0A412LC59	53.9	0.0000000385	XRE family transcriptional regulator	N/A
Pfam	UHGV-0190760_25	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0190760_25	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0190760_25	PF01381,NF007257,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0190760_27	PF14282,COG5570	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0190760	Yes	21,174	39	59	1
UHGV-1419763	No	20,954	39	58	1