vOTU vOTU-128886

vOTU: vOTU-128886

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-128886
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter sp900548765
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-06113 → vOTU-128886
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter sp900548765
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0174048
Biosample ID	N/A
Genome length (bp)	27,552 bps
CheckV completeness	66.76% (Medium-quality)
CDS count	38
CDS density	93.29%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter sp900548765	Total connections	4	Host agreement	75
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter sp900548765	Total connections	4	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 66.76)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0174048_1	K18830	52.2	0.000000000000014	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0174048_1	phrog_8	49.8	0.000000000000037	transcriptional regulator	transcription regulation
UniRef90	UHGV-0174048_1	UniRef90_A0A1Q9J555	130.0	6.13e-37	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0174048_1	97138.C820_01960	105.0	7.46e-28	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0174048_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0174048_1	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0174048_1	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0174048_2	K22300	50.1	0.000000000000061	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0174048_2	phrog_8	44.2	0.0000000000013	transcriptional regulator	transcription regulation
UniRef90	UHGV-0174048_2	UniRef90_A0A1Q9J555	124.0	4.03e-34	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0174048_2	887325.HMPREF0381_0352	114.0	4.87e-31	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0174048_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0174048_2	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0174048_2	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0174048_4	phrog_5765	50.6	0.000000000000014	N/A	unknown function
eggNOG-mapper	UHGV-0174048_4	1095750.HMPREF9970_1008	54.7	0.00000000416	N/A	N/A
NCBIFam	UHGV-0174048_4	NF033495.1	N/A	N/A	BC1881 family protein	N/A
PHROG	UHGV-0174048_5	phrog_3292	59.6	6.1e-17	N/A	unknown function
UniRef90	UHGV-0174048_5	UniRef90_A0A3R6NQ88	81.6	4.88e-19	KTSC domain-containing protein	N/A
eggNOG-mapper	UHGV-0174048_5	1121342.AUCO01000012_gene1704	77.0	5.67e-18	KTSC domain	N/A
Pfam	UHGV-0174048_5	PF13619	N/A	N/A	KTSC domain	KTSC
COG	UHGV-0174048_5	COG0433	N/A	N/A	Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains	N/A
structural_annotation	UHGV-0174048_5	PF13619	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0174048_8	PF13560,MF_00535,NF041677,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0174048_10	phrog_3584	118.7	5.1e-35	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0174048_10	UniRef90_UPI001D0EB55A	153.0	9.90017e-42	helitron helicase-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0174048_10	483218.BACPEC_01173	198.0	0	N/A	N/A
structural_annotation	UHGV-0174048_10	PF21578	N/A	N/A	N/A	N/A
COG	UHGV-0174048_11	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0174048_16	phrog_17690	122.9	1.3e-36	N/A	unknown function
UniRef90	UHGV-0174048_16	UniRef90_A0A6L5XWF4	121.0	8e-33	3-dehydroquinate synthase	N/A
eggNOG-mapper	UHGV-0174048_16	33035.JPJF01000123_gene2433	107.0	5.73e-28	N/A	N/A
Pfam	UHGV-0174048_18	PF20037	N/A	N/A	N/A	DUF6440
structural_annotation	UHGV-0174048_18	PF20037	N/A	N/A	N/A	N/A
KOfam	UHGV-0174048_21	K00571	84.8	1.1e-24	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0174048_21	phrog_16	217.6	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0174048_21	UniRef90_A0A173S745	1481.0	0	Putative methyltransferase	N/A
eggNOG-mapper	UHGV-0174048_21	1298920.KI911353_gene2709	1406.0	0	DEAD-like helicases superfamily	N/A
Pfam	UHGV-0174048_21	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0174048_21	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0174048_21	PF01555,PF16203,PF04851,MF_01821,MF_00472,NF041790,NF008572,COG0553,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0174048_22	K00558	225.7	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0174048_22	phrog_116	266.4	0	DNA methyltransferase	other
UniRef90	UHGV-0174048_22	UniRef90_A0A1C5S2H5	850.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0174048_22	1235800.C819_02255	658.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0174048_22	MTase_II_00020	115.8	2.3e-37	Type II methyltransferase	RM
Pfam	UHGV-0174048_22	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0174048_22	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0174048_22	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0174048_24	phrog_1384	103.3	2.5e-30	Mom-like DNA modification protein	other
eggNOG-mapper	UHGV-0174048_24	411461.DORFOR_01154	259.0	0	COG NOG12663 non supervised orthologous group	N/A
structural_annotation	UHGV-0174048_24	PF11124,MF_02210,NF040502,COG3818	N/A	N/A	N/A	N/A
PHROG	UHGV-0174048_26	phrog_6724	86.1	3.8e-25	N/A	unknown function
eggNOG-mapper	UHGV-0174048_26	1463936.JOJI01000043_gene7935	65.1	0.00000000000228	N/A	N/A
KOfam	UHGV-0174048_27	K07474	71.3	3e-20	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0174048_27	phrog_2606	127.2	2.7003e-42	terminase small subunit	head and packaging
UniRef90	UHGV-0174048_27	UniRef90_A0A1Q6KFD5	147.0	8.85e-40	Phage portal protein	N/A
eggNOG-mapper	UHGV-0174048_27	1415774.U728_838	122.0	2.31e-30	terminase, small subunit	N/A
Pfam	UHGV-0174048_27	PF06056	N/A	N/A	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
Pfam	UHGV-0174048_27	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0174048_27	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0174048_27	PF06056,NF040785,COG5484	N/A	N/A	N/A	N/A
KOfam	UHGV-0174048_28	K06909	97.6	1.7e-28	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0174048_28	phrog_979	202.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0174048_28	UniRef90_A0A2V2D4K5	706.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0174048_28	748224.HMPREF9436_01395	650.0	0	Terminase-like family	N/A
Pfam	UHGV-0174048_28	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0174048_28	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0174048_28	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0174048_29	phrog_156	305.6	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0174048_29	748224.HMPREF9436_01396	533.0	0	N/A	N/A
structural_annotation	UHGV-0174048_29	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0174048_30	K07584	56.8	4.8e-16	N/A	N/A
PHROG	UHGV-0174048_30	phrog_4478	65.2	8e-19	peptidase	other
UniRef90	UHGV-0174048_30	UniRef90_UPI0005504E05	65.1	0.0000000000153	ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0174048_30	748224.HMPREF9436_01398	63.5	0.000000000219	Cysteine protease Prp	N/A
Pfam	UHGV-0174048_30	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0174048_30	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0174048_30	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0174048_31	phrog_13908	263.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0174048_31	1410650.JHWL01000003_gene2831	115.0	2.04e-27	N/A	N/A
PHROG	UHGV-0174048_32	phrog_1357	273.9	0	major head protein	head and packaging
UniRef90	UHGV-0174048_32	UniRef90_A0A3R6PQZ4	427.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0174048_32	657322.FPR_02330	419.0	0	N/A	N/A
Pfam	UHGV-0174048_32	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0174048_32	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0174048_32	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0174048_33	phrog_15239	53.0	0.0000000000000055	N/A	unknown function
PHROG	UHGV-0174048_34	phrog_12105	128.4	3.1e-38	N/A	unknown function
eggNOG-mapper	UHGV-0174048_34	1226322.HMPREF1545_03850	67.4	0.00000000000104	N/A	N/A
PHROG	UHGV-0174048_35	phrog_511	241.5	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0174048_35	1321782.HMPREF1986_00351	311.0	0	N/A	N/A
structural_annotation	UHGV-0174048_35	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0174048_37	1410650.JHWL01000003_gene2815	61.2	0.000000208	N/A	N/A
PHROG	UHGV-0174048_38	phrog_22978	86.0	4.4e-39	N/A	unknown function
eggNOG-mapper	UHGV-0174048_38	1280668.ATVT01000006_gene1409	81.6	0.0000000000000106	sequence-specific DNA binding	N/A
COG	UHGV-0174048_38	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0174048	Yes	27,552	41	67	1
UHGV-0213549	No	27,134	41	66	1