vOTU vOTU-129348

vOTU: vOTU-129348

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-129348
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00013 → vOTU-129348
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0136247
Biosample ID	SAMN04209230
Genome length (bp)	37,875 bps
CheckV completeness	89.98% (Medium-quality)
CDS count	64
CDS density	90.19%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	231	Host agreement	96.1
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium → Faecalibacterium prausnitzii_D	Total connections	38	Host agreement	71.05

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 89.98)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0136247_2	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0136247_3	phrog_20016	198.2	0	N/A	unknown function
UniRef90	UHGV-0136247_3	UniRef90_A0A285PT46	211.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0136247_3	1226322.HMPREF1545_00077	180.0	0	N/A	N/A
structural_annotation	UHGV-0136247_3	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0136247_4	phrog_16490	143.2	1.49939e-42	N/A	unknown function
eggNOG-mapper	UHGV-0136247_4	1408437.JNJN01000043_gene803	134.0	8.07e-36	N/A	N/A
PHROG	UHGV-0136247_5	phrog_59	148.3	2.52234e-44	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0136247_5	UniRef90_A0A8I2AQR4	129.0	1.63e-34	NUMOD4 motif-containing HNH endonuclease	N/A
eggNOG-mapper	UHGV-0136247_5	357276.EL88_11520	122.0	6.08e-33	HNH endonuclease domain protein	N/A
PADLOC	UHGV-0136247_5	HEase_00016	91.4	1.7e-26	homing endonuclease	RM
Pfam	UHGV-0136247_5	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-0136247_5	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0136247_5	PF07463,PF07453	N/A	N/A	N/A	N/A
PHROG	UHGV-0136247_6	phrog_22984	79.5	2.5e-23	N/A	unknown function
PHROG	UHGV-0136247_7	phrog_21718	117.7	8.6e-35	N/A	unknown function
eggNOG-mapper	UHGV-0136247_7	397290.C810_05210	99.0	3.81e-24	N/A	N/A
PHROG	UHGV-0136247_8	phrog_3754	92.9	2.9e-27	N/A	unknown function
eggNOG-mapper	UHGV-0136247_8	1485543.JMME01000025_gene2462	104.0	1.39e-27	N/A	N/A
KOfam	UHGV-0136247_10	K22300	64.1	3.4e-22	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0136247_10	phrog_8	70.5	3e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0136247_10	UniRef90_A0A386H238	61.6	0.0000000093	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0136247_10	1235790.C805_00648	60.5	0.00000000681	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0136247_10	retron_type_VI_hth_cluster2_1	45.4	0.00000000000024	N/A	Retron
Pfam	UHGV-0136247_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0136247_10	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
COG	UHGV-0136247_10	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0136247_10	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0136247_12	phrog_15303	88.4	6e-26	N/A	unknown function
PHROG	UHGV-0136247_13	phrog_1863	75.0	5.6e-22	N/A	unknown function
eggNOG-mapper	UHGV-0136247_13	718252.FP2_04900	140.0	8.61799e-43	N/A	N/A
KOfam	UHGV-0136247_14	K07273	171.3	0	acm; lysozyme	N/A
PHROG	UHGV-0136247_14	phrog_291	135.5	4.9e-40	endolysin	lysis
UniRef90	UHGV-0136247_14	UniRef90_UPI001D0EE7D8	256.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0136247_14	748224.HMPREF9436_00154	246.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0136247_14	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0136247_14	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0136247_14	PF01183,COG3757	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0136247_15	641524.ADICYQ_1391	129.0	1.1e-29	lipolytic protein G-D-S-L family	N/A
COG	UHGV-0136247_15	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
PHROG	UHGV-0136247_16	phrog_3558	195.9	0	tail protein	tail
UniRef90	UHGV-0136247_16	UniRef90_A0A3E2U3C8	169.0	1.46996e-41	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0136247_16	908340.HMPREF9406_0177	61.2	0.0000006	Phage minor structural protein, N-terminal	N/A
Pfam	UHGV-0136247_16	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-0136247_16	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0136247_16	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
UniRef90	UHGV-0136247_17	UniRef90_R6QN45	89.7	5.21e-18	Putative phage tail component domain protein	N/A
eggNOG-mapper	UHGV-0136247_17	411490.ANACAC_00709	82.0	6.5e-16	phage tail	N/A
COG	UHGV-0136247_17	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0136247_17	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0136247_18	phrog_28775	131.5	2.9e-39	tail length tape measure protein	tail
UniRef90	UHGV-0136247_18	UniRef90_A0A844DDD5	1045.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-0136247_18	1492737.FEM08_12070	142.0	1.37e-32	tape measure	N/A
Pfam	UHGV-0136247_18	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0136247_18	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0136247_18	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0136247_18	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0136247_21	phrog_885	64.9	1e-18	major tail protein	tail
UniRef90	UHGV-0136247_21	UniRef90_A0A843J9F0	128.0	4.89e-33	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0136247_21	457396.CSBG_01054	57.4	0.000000247	Chitobiase/beta-hexosaminidase C-terminal domain	N/A
COG	UHGV-0136247_21	COG2273	N/A	N/A	Beta-glucanase, GH16 family	N/A
structural_annotation	UHGV-0136247_21	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0136247_22	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-0136247_23	phrog_17977	51.7	0.000000000000014	N/A	unknown function
UniRef90	UHGV-0136247_23	UniRef90_A0A844DHJ8	239.0	0	Phage head closure protein	N/A
NCBIFam	UHGV-0136247_23	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0136247_23	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0136247_25	phrog_544	142.6	2.59941e-42	major head protein	head and packaging
UniRef90	UHGV-0136247_25	UniRef90_R0BKA1	435.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0136247_25	476272.RUMHYD_01776	324.0	0	N/A	N/A
structural_annotation	UHGV-0136247_25	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0136247_26	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0136247_27	phrog_478	126.5	1.1e-37	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0136247_27	UniRef90_A0A373Q857	168.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0136247_27	1111121.HMPREF1247_0834	94.0	6.35e-23	N/A	N/A
PHROG	UHGV-0136247_28	phrog_5	49.0	0.00000000000016	tail completion or Neck1 protein	connector
UniRef90	UHGV-0136247_28	UniRef90_A0A844DDB3	288.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0136247_28	929506.CbC4_1219	85.5	3.76e-19	N/A	N/A
Pfam	UHGV-0136247_28	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0136247_28	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0136247_30	phrog_8680	201.2	0	N/A	unknown function
UniRef90	UHGV-0136247_30	UniRef90_A0A844D688	453.0	0	N/A	N/A
eggNOG-mapper	UHGV-0136247_30	1423790.BN53_04265	182.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
Pfam	UHGV-0136247_30	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-0136247_30	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0136247_30	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0136247_31	phrog_595	77.6	2e-22	head maturation protease	head and packaging
UniRef90	UHGV-0136247_31	UniRef90_A0A844DBI4	617.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0136247_31	1504822.CCNO01000013_gene286	134.0	2.61e-32	cell adhesion	N/A
Pfam	UHGV-0136247_31	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0136247_31	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0136247_31	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
Pfam	UHGV-0136247_32	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0136247_33	phrog_64	123.1	8.6e-37	portal protein	head and packaging
UniRef90	UHGV-0136247_33	UniRef90_A0A6N7TNT3	498.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0136247_33	673376.F2VHW1_9CAUD	170.0	4.2039e-45	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0136247_33	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0136247_33	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0136247_34	K06909	355.7	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0136247_34	phrog_3717	152.3	2.8026e-45	terminase large subunit	head and packaging
UniRef90	UHGV-0136247_34	UniRef90_A0A416S378	471.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0136247_34	665956.HMPREF1032_02957	434.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0136247_34	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0136247_34	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0136247_34	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0136247_34	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0136247_34	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0136247_37	PF17941,MF_01917,NF010490,COG3886	N/A	N/A	N/A	N/A
PHROG	UHGV-0136247_38	phrog_36	57.3	2.8e-16	transcriptional regulator	transcription regulation
structural_annotation	UHGV-0136247_38	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-0136247_39	K03700	89.1	7e-26	recU; recombination protein U	N/A
PHROG	UHGV-0136247_39	phrog_843	160.0	0	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0136247_39	UniRef90_A0A1C5P0D5	340.0	0	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-0136247_39	748224.HMPREF9436_03347	341.0	0	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
Pfam	UHGV-0136247_39	PF03838	N/A	N/A	Recombination protein U	RecU
COG	UHGV-0136247_39	COG3331	N/A	N/A	Penicillin-binding protein-related factor A, putative recombinase	N/A
structural_annotation	UHGV-0136247_39	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
PHROG	UHGV-0136247_40	phrog_3136	152.7	1.4013e-45	N/A	unknown function
UniRef90	UHGV-0136247_40	UniRef90_UPI001CBCD733	174.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0136247_40	394503.Ccel_3165	54.7	0.000000254	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0136247_40	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0136247_40	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0136247_43	phrog_3253	77.0	1.1e-22	N/A	unknown function
UniRef90	UHGV-0136247_43	UniRef90_A0A2J4JRQ6	114.0	2.88e-32	Resolvase	N/A
eggNOG-mapper	UHGV-0136247_43	1151292.QEW_3282	47.8	0.000000918	N/A	N/A
structural_annotation	UHGV-0136247_43	PF18618	N/A	N/A	N/A	N/A
PHROG	UHGV-0136247_45	phrog_6568	84.3	8.5e-25	N/A	unknown function
eggNOG-mapper	UHGV-0136247_45	1203606.HMPREF1526_00241	61.2	0.0000000000138	N/A	N/A
PHROG	UHGV-0136247_49	phrog_253	124.2	9.3e-37	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0136247_49	UniRef90_E2ZNS5	293.0	0	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-0136247_49	748224.HMPREF9436_03356	293.0	0	Siphovirus Gp157	N/A
Pfam	UHGV-0136247_49	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0136247_49	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-0136247_50	phrog_15768	160.7	0	N/A	unknown function
UniRef90	UHGV-0136247_50	UniRef90_A0A6N7TND1	469.0	0	N/A	N/A
eggNOG-mapper	UHGV-0136247_50	748224.HMPREF9436_03357	227.0	0	N/A	N/A
Pfam	UHGV-0136247_50	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0136247_50	PF19808	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0136247_51	PF20964,PF13384,NF011523	N/A	N/A	N/A	N/A
KOfam	UHGV-0136247_52	K03111	131.9	7.6e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0136247_52	phrog_44	143.0	1.80067e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0136247_52	UniRef90_A0A6N7TNV3	308.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0136247_52	748224.HMPREF9436_03359	303.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0136247_52	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0136247_52	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0136247_52	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0136247_52	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0136247_52	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0136247_53	phrog_155	148.2	4.62428e-44	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0136247_53	UniRef90_E2ZNS9	413.0	0	Erf family protein	N/A
eggNOG-mapper	UHGV-0136247_53	748224.HMPREF9436_03360	413.0	0	ERF superfamily	N/A
Pfam	UHGV-0136247_53	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0136247_53	PF04404,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0136247_54	phrog_38771	81.7	5.6e-24	N/A	unknown function
UniRef90	UHGV-0136247_58	UniRef90_UPI00130EBC54	138.0	5.82996e-41	N/A	N/A
eggNOG-mapper	UHGV-0136247_58	762051.LKI_01980	49.7	0.000000814	N/A	N/A
Pfam	UHGV-0136247_58	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-0136247_58	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0136247_58	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0136247_59	UniRef90_A0A6N7TQ12	148.0	7.00649e-45	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0136247_59	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
Pfam	UHGV-0136247_60	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0136247_60	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
PHROG	UHGV-0136247_62	phrog_7711	98.7	4.4e-29	N/A	unknown function
UniRef90	UHGV-0136247_62	UniRef90_UPI001C38CAD2	100.0	3.74e-23	Lar family restriction alleviation protein	N/A
eggNOG-mapper	UHGV-0136247_62	1304866.K413DRAFT_1204	110.0	1.09e-28	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0136247	Yes	37,875	54	90	1