vOTU vOTU-129433

vOTU: vOTU-129433

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-129433
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00118 → vSUBFAM-07550 → vGENUS-21020 → vOTU-129433
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → CAG-382 → UMGS882 → UMGS882 sp900546385
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0019367
Biosample ID	N/A
Genome length (bp)	31,819 bps
CheckV completeness	81.01% (Medium-quality)
CDS count	56
CDS density	93.20%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → CAG-382 → UMGS882 → UMGS882 sp900546385	Total connections	9	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 81.01)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0019367_2	phrog_8147	42.4	0.0000000000047	tail fiber protein	tail
PHROG	UHGV-0019367_4	phrog_4105	76.1	3.3e-22	N/A	unknown function
eggNOG-mapper	UHGV-0019367_4	397288.C806_00056	80.9	2.17e-18	N/A	N/A
PHROG	UHGV-0019367_5	phrog_33302	41.0	0.000000000031	N/A	unknown function
eggNOG-mapper	UHGV-0019367_6	642492.Clole_0840	90.5	7.23e-23	N/A	N/A
KOfam	UHGV-0019367_7	K19304	112.5	5.1e-33	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0019367_7	phrog_7767	86.7	2.5e-25	metallo-endopeptidase	other
UniRef90	UHGV-0019367_7	UniRef90_A0A2V2G827	194.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-0019367_7	665956.HMPREF1032_00102	95.9	3.74e-21	heme binding	N/A
Pfam	UHGV-0019367_7	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-0019367_7	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
UniRef90	UHGV-0019367_8	UniRef90_A0A843IZ65	87.4	3.04e-21	Sigma70_r4 domain-containing protein	N/A
structural_annotation	UHGV-0019367_8	PF04545,MF_00245,NF001074,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0019367_10	phrog_16490	73.7	3.4e-21	N/A	unknown function
eggNOG-mapper	UHGV-0019367_10	641112.ACOK01000103_gene525	129.0	1.62e-34	N/A	N/A
structural_annotation	UHGV-0019367_11	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019367_12	PF02255,TIGR00823,COG1447	N/A	N/A	N/A	N/A
KOfam	UHGV-0019367_13	K14059	207.9	0	int; integrase	N/A
PHROG	UHGV-0019367_13	phrog_1	190.8	0	integrase	integration and excision
UniRef90	UHGV-0019367_13	UniRef90_A0A353J242	261.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0019367_13	1226322.HMPREF1545_00144	241.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0019367_13	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0019367_13	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0019367_13	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0019367_14	UniRef90_UPI001031B31D	219.0	0	stalk domain-containing protein	N/A
eggNOG-mapper	UHGV-0019367_14	1297617.JPJD01000001_gene2682	193.0	0	Peptidase propeptide and YPEB domain protein	N/A
Pfam	UHGV-0019367_14	PF07833	N/A	N/A	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
COG	UHGV-0019367_14	COG3212	N/A	N/A	PepSY domain containing protein, regulator of zincin peptidase activity	N/A
PHROG	UHGV-0019367_15	phrog_8	41.6	0.000000000024	transcriptional regulator	transcription regulation
UniRef90	UHGV-0019367_15	UniRef90_A0A8D9UHB1	75.5	0.00000000000000209	Repressor protein CI	N/A
Pfam	UHGV-0019367_15	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0019367_15	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
eggNOG-mapper	UHGV-0019367_20	1403313.AXBR01000018_gene3548	49.3	0.00000213	Cell division suppressor protein YneA	N/A
COG	UHGV-0019367_20	COG1388	N/A	N/A	LysM repeat	N/A
eggNOG-mapper	UHGV-0019367_22	1235802.C823_04724	87.8	3.53e-17	N/A	N/A
PHROG	UHGV-0019367_23	phrog_674	143.8	7.10458e-43	N/A	unknown function
UniRef90	UHGV-0019367_23	UniRef90_A0A374N9T8	166.0	0	N/A	N/A
eggNOG-mapper	UHGV-0019367_23	665956.HMPREF1032_03103	152.0	1.99993e-41	N/A	N/A
Pfam	UHGV-0019367_23	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0019367_23	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-0019367_24	phrog_14970	213.8	0	N/A	unknown function
UniRef90	UHGV-0019367_24	UniRef90_UPI00123F00F5	191.0	0	Rad52/Rad22 family DNA repair protein	N/A
eggNOG-mapper	UHGV-0019367_24	411470.RUMGNA_02193	170.0	0	double-strand break repair protein	N/A
Pfam	UHGV-0019367_24	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-0019367_24	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0019367_24	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0019367_25	phrog_398	181.5	0	N/A	unknown function
UniRef90	UHGV-0019367_25	UniRef90_UPI000489F9F0	162.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-0019367_25	1485543.JMME01000021_gene802	162.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-0019367_25	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-0019367_25	PF16784	N/A	N/A	N/A	N/A
KOfam	UHGV-0019367_26	K03111	123.7	2.4e-36	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0019367_26	phrog_44	138.5	3.69999e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019367_26	UniRef90_A0A316LR42	138.0	4.96e-39	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0019367_26	718252.FP2_06770	117.0	4.5e-31	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0019367_26	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0019367_26	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0019367_26	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0019367_26	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0019367_26	PF00436,MF_00984,NF005242,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0019367_27	K22299	50.7	0.000000000000039	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0019367_27	phrog_8	63.4	4.9e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0019367_27	UniRef90_A0A354CSP9	74.3	0.0000000000000151	HTH cro/C1-type domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0019367_27	203119.Cthe_0364	68.2	0.00000000000371	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0019367_27	retron_type_VI_hth_cluster2_1	44.0	0.000000000005	N/A	Retron
Pfam	UHGV-0019367_27	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0019367_27	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0019367_28	phrog_2514	63.9	2.3e-18	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0019367_28	1453498.LG45_00620	81.6	0.00000000000000102	N/A	N/A
structural_annotation	UHGV-0019367_28	PF10771,MF_01177,TIGR01714,COG5529	N/A	N/A	N/A	N/A
KOfam	UHGV-0019367_30	K01160	40.5	0.000000000062	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0019367_30	phrog_1682	74.6	1.3e-21	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019367_30	UniRef90_A7VTC7	100.0	9.16e-25	Crossover junction endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0019367_30	428125.CLOLEP_01819	100.0	1.54e-25	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0019367_30	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0019367_30	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0019367_33	K14056	54.0	0.0000000000000027	puuR; HTH-type transcriptional regulator, repressor for puuD	N/A
PHROG	UHGV-0019367_33	phrog_8	63.4	5.1e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0019367_33	UniRef90_A0A1R0YXM3	63.5	0.00000000156	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0019367_33	1140002.I570_00866	63.5	0.000000000047	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0019367_33	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0019367_33	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0019367_33	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0019367_34	K00558	50.5	0.000000000000018	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0019367_34	phrog_757	112.1	3.7e-33	DNA methyltransferase	other
UniRef90	UHGV-0019367_34	UniRef90_A0A1C6AHB8	294.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0019367_34	411473.RUMCAL_00286	290.0	0	C-5 cytosine-specific DNA methylase	N/A
Pfam	UHGV-0019367_34	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0019367_34	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0019367_34	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0019367_35	phrog_478	133.7	5.9e-40	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0019367_35	UniRef90_R6E548	156.0	0	Prophage pi1 protein 29	N/A
eggNOG-mapper	UHGV-0019367_35	1111121.HMPREF1247_0834	99.8	6.04e-25	N/A	N/A
PHROG	UHGV-0019367_37	phrog_801	82.7	4.9e-24	endolysin; inhibits RNA polymerase	lysis
UniRef90	UHGV-0019367_37	UniRef90_A0A7V6TKR0	113.0	5.28e-29	N/A	N/A
Pfam	UHGV-0019367_37	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
PHROG	UHGV-0019367_38	phrog_13321	64.4	4.6e-19	N/A	unknown function
UniRef90	UHGV-0019367_38	UniRef90_UPI00030D2C45	285.0	0	radical SAM protein	N/A
eggNOG-mapper	UHGV-0019367_38	1007096.BAGW01000031_gene122	285.0	0	PFAM Radical SAM	N/A
Pfam	UHGV-0019367_38	PF04055	N/A	N/A	Radical SAM superfamily	Radical_SAM
COG	UHGV-0019367_38	COG1533	N/A	N/A	DNA repair photolyase	N/A
structural_annotation	UHGV-0019367_38	PF20903,MF_00917,NF033668,COG4422	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019367_40	1226322.HMPREF1545_00288	55.5	0.0000000117	N/A	N/A
PHROG	UHGV-0019367_41	phrog_21498	235.6	0	N/A	unknown function
UniRef90	UHGV-0019367_41	UniRef90_C7MM70	209.0	0	ParB-like nuclease	N/A
eggNOG-mapper	UHGV-0019367_41	469378.Ccur_02830	209.0	0	DNA binding	N/A
COG	UHGV-0019367_41	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0019367_41	PF05869,TIGR01712	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019367_42	931276.Cspa_c57180	53.5	0.000000455	DNA-packaging protein gp3	N/A
KOfam	UHGV-0019367_43	K06909	74.2	1.2e-21	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0019367_43	phrog_2	76.8	4e-22	terminase large subunit	head and packaging
UniRef90	UHGV-0019367_43	UniRef90_UPI00137A4D1F	470.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0019367_43	411902.CLOBOL_00139	400.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-0019367_43	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0019367_43	PF04466,PF20441,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0019367_44	phrog_533	180.9	0	portal protein	head and packaging
UniRef90	UHGV-0019367_44	UniRef90_A0A136WBU7	242.0	0	Phage portal protein, SPP1 Gp6-like	N/A
eggNOG-mapper	UHGV-0019367_44	1232443.BAIA02000078_gene36	114.0	4.43e-25	N/A	N/A
Pfam	UHGV-0019367_44	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0019367_44	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0019367_45	phrog_581	164.2	0	minor head protein	head and packaging
UniRef90	UHGV-0019367_45	UniRef90_A0A1C6B625	231.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0019367_45	693746.OBV_18050	182.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0019367_45	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0019367_45	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019367_45	PF06152	N/A	N/A	N/A	N/A
UniRef90	UHGV-0019367_46	UniRef90_A0A7T3RDX5	71.6	0.00000000000265	Phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0019367_46	536233.CLO_0885	58.2	0.0000000572	Phage minor structural protein GP20	N/A
Pfam	UHGV-0019367_46	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-0019367_47	phrog_422	244.9	0	major head protein	head and packaging
UniRef90	UHGV-0019367_47	UniRef90_A0A345MKD0	389.0	0	Main capsid protein	N/A
eggNOG-mapper	UHGV-0019367_47	1160721.RBI_II00538	389.0	0	N/A	N/A
structural_annotation	UHGV-0019367_47	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0019367_49	phrog_541	74.3	1.5e-21	head-tail adaptor	connector
PHROG	UHGV-0019367_50	phrog_3366	75.1	8.9e-22	N/A	unknown function
eggNOG-mapper	UHGV-0019367_50	573061.Clocel_3539	59.7	0.00000000201	N/A	N/A
Pfam	UHGV-0019367_50	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0019367_50	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-0019367_51	phrog_556	63.5	2.9e-18	minor head protein	head and packaging
UniRef90	UHGV-0019367_51	UniRef90_A0A7G9WJF3	60.1	0.00000000481	Capsid protein	N/A
eggNOG-mapper	UHGV-0019367_51	169963.lmo2293	56.6	0.0000000153	Minor capsid protein	N/A
Pfam	UHGV-0019367_51	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0019367_51	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0019367_52	phrog_3266	55.9	6.6e-16	tail completion	connector
structural_annotation	UHGV-0019367_52	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0019367_53	phrog_3099	77.2	2.2e-22	N/A	unknown function
eggNOG-mapper	UHGV-0019367_53	665956.HMPREF1032_03060	162.0	0	N/A	N/A
structural_annotation	UHGV-0019367_53	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0019367_54	phrog_11299	43.6	0.0000000000051	N/A	unknown function
PHROG	UHGV-0019367_55	phrog_706	83.5	2.5e-24	N/A	unknown function
UniRef90	UHGV-0019367_55	UniRef90_A0A2U1BEN4	130.0	1.5e-34	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0019367_55	665956.HMPREF1032_03058	126.0	4.92e-34	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0019367_55	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0019367_55	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0019367_56	phrog_1535	148.7	3.22299e-44	tail length tape measure protein	tail
UniRef90	UHGV-0019367_56	UniRef90_UPI000EB4EB62	159.0	4.65932e-42	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0019367_56	397288.C806_03052	261.0	0	domain protein	N/A
COG	UHGV-0019367_56	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0019367_56	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0019367	Yes	31,819	48	81	1