vOTU vOTU-129559

vOTU: vOTU-129559

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-129559
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter
Taxonomy (UHGV)	vFAM-00022 → vSUBFAM-01866 → vGENUS-02430 → vOTU-129559
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter rectalis
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0023515
Biosample ID	N/A
Genome length (bp)	27,284 bps
CheckV completeness	81.60% (Medium-quality)
CDS count	37
CDS density	90.98%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter rectalis	Total connections	325	Host agreement	86.15
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter	Total connections	6	Host agreement	83.33

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 81.6)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0023515_1	phrog_1067	396.6	0	minor head protein	head and packaging
UniRef90	UHGV-0023515_1	UniRef90_A0A0M6WYA7	1005.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0023515_1	1160721.RBI_I01574	391.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0023515_1	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0023515_1	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0023515_1	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0023515_1	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0023515_2	phrog_33	88.5	1.2e-25	distal tail protein Dit	tail
UniRef90	UHGV-0023515_2	UniRef90_UPI00164BA811	191.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0023515_2	1160721.RBI_I01575	158.0	4.2039e-45	Phage tail protein	N/A
COG	UHGV-0023515_2	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0023515_2	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0023515_3	phrog_1272	330.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0023515_3	UniRef90_A0A6N3FB22	654.0	0	Chromosome partition protein Smc	N/A
eggNOG-mapper	UHGV-0023515_3	411468.CLOSCI_00540	565.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0023515_3	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0023515_3	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0023515_3	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0023515_3	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0023515_4	411468.CLOSCI_00541	96.3	1.26e-25	N/A	N/A
eggNOG-mapper	UHGV-0023515_5	411468.CLOSCI_00542	95.9	4.81e-24	N/A	N/A
structural_annotation	UHGV-0023515_5	PF06222	N/A	N/A	N/A	N/A
PHROG	UHGV-0023515_6	phrog_2175	67.3	2.6e-19	protein with Ig domain	other
eggNOG-mapper	UHGV-0023515_6	411468.CLOSCI_00543	213.0	0	N/A	N/A
structural_annotation	UHGV-0023515_6	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0023515_7	411902.CLOBOL_03875	60.5	0.000000000303	N/A	N/A
structural_annotation	UHGV-0023515_7	PF20765	N/A	N/A	N/A	N/A
UniRef90	UHGV-0023515_8	UniRef90_UPI001C00E12E	108.0	6.29e-28	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0023515_8	411902.CLOBOL_03876	112.0	3.97e-30	COG NOG18351 non supervised orthologous group	N/A
Pfam	UHGV-0023515_8	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0023515_8	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0023515_9	phrog_1951	68.0	1.1e-19	head-tail adaptor	connector
UniRef90	UHGV-0023515_9	UniRef90_UPI00189EBA11	113.0	5.44e-31	phage head closure protein	N/A
eggNOG-mapper	UHGV-0023515_9	1123263.AUKY01000046_gene471	63.9	0.00000000000517	N/A	N/A
structural_annotation	UHGV-0023515_9	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0023515_10	phrog_5223	63.5	2.3e-18	neck protein	connector
UniRef90	UHGV-0023515_10	UniRef90_A0A174XIL0	114.0	5.38e-31	N/A	N/A
eggNOG-mapper	UHGV-0023515_10	411902.CLOBOL_03878	112.0	4.5e-31	N/A	N/A
PHROG	UHGV-0023515_11	phrog_10	131.2	9.8e-39	major head protein	head and packaging
UniRef90	UHGV-0023515_11	UniRef90_A0A0M6WZM3	739.0	0	Bacterial surface proteins containing Ig-like domains	N/A
eggNOG-mapper	UHGV-0023515_11	411468.CLOSCI_00548	551.0	0	Phage capsid family	N/A
Pfam	UHGV-0023515_11	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0023515_11	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0023515_11	PF05065,PF09032,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0023515_12	K01358	146.2	2.8026e-43	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0023515_12	phrog_94	221.6	0	head maturation protease	head and packaging
UniRef90	UHGV-0023515_12	UniRef90_A0A0M6WYF6	432.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0023515_12	411468.CLOSCI_00549	319.0	0	COG COG0740 Protease subunit of ATP-dependent Clp proteases	N/A
Pfam	UHGV-0023515_12	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0023515_12	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0023515_12	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0023515_13	phrog_12	163.8	0	portal protein	head and packaging
UniRef90	UHGV-0023515_13	UniRef90_B0NAT1	541.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0023515_13	411468.CLOSCI_00550	541.0	0	Phage portal protein	N/A
Pfam	UHGV-0023515_13	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0023515_13	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0023515_13	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0023515_14	phrog_9	348.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0023515_14	UniRef90_B0NAT2	775.0	0	Putative phage terminase, large subunit	N/A
eggNOG-mapper	UHGV-0023515_14	411468.CLOSCI_00551	775.0	0	COG COG4626 Phage terminase-like protein, large subunit	N/A
Pfam	UHGV-0023515_14	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0023515_14	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0023515_14	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0023515_14	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0023515_15	phrog_1066	70.4	2.1e-20	N/A	unknown function
UniRef90	UHGV-0023515_15	UniRef90_B0NAT3	155.0	0	Putative phage terminase, small subunit, P27 family	N/A
eggNOG-mapper	UHGV-0023515_15	411902.CLOBOL_03883	157.0	0	N/A	N/A
Pfam	UHGV-0023515_15	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0023515_15	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0023515_16	phrog_119	62.9	5e-18	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023515_16	UniRef90_A0A374JQS6	139.0	2.1e-40	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0023515_16	411468.CLOSCI_00553	137.0	1.01e-40	HNH endonuclease	N/A
COG	UHGV-0023515_16	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
eggNOG-mapper	UHGV-0023515_17	411468.CLOSCI_00554	118.0	8.07e-33	N/A	N/A
PHROG	UHGV-0023515_18	phrog_3584	237.1	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0023515_18	411902.CLOBOL_03891	385.0	0	N/A	N/A
structural_annotation	UHGV-0023515_18	PF21578	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0023515_19	NF011508	N/A	N/A	N/A	N/A
PHROG	UHGV-0023515_20	phrog_15077	108.6	1e-31	N/A	unknown function
UniRef90	UHGV-0023515_20	UniRef90_A5ZPN2	202.0	0	N/A	N/A
eggNOG-mapper	UHGV-0023515_20	97139.C824_05986	325.0	0	N/A	N/A
structural_annotation	UHGV-0023515_20	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-0023515_21	phrog_8470	347.8	0	N/A	unknown function
UniRef90	UHGV-0023515_21	UniRef90_UPI001D086F83	845.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0023515_21	97139.C824_00039	907.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0023515_21	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0023515_21	PF14284	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0023515_22	1235792.C808_00065	243.0	0	N/A	N/A
UniRef90	UHGV-0023515_23	UniRef90_A0A417WAJ1	117.0	9.52e-32	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0023515_23	1235800.C819_02254	120.0	1.56e-33	HNH nucleases	N/A
structural_annotation	UHGV-0023515_27	PF18066,NF007780,COG1544	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0023515_28	PF09486,TIGR03090,COG5420	N/A	N/A	N/A	N/A
PHROG	UHGV-0023515_30	phrog_20330	83.0	3e-24	N/A	unknown function
eggNOG-mapper	UHGV-0023515_30	1094508.Tsac_2450	71.6	0.00000000000000781	N/A	N/A
KOfam	UHGV-0023515_33	K22300	44.8	0.0000000000025	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0023515_33	phrog_8	41.5	0.000000000028	transcriptional regulator	transcription regulation
UniRef90	UHGV-0023515_33	UniRef90_A0A2N5NUM8	93.6	1.12e-23	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0023515_33	1256908.HMPREF0373_00646	92.0	8.3e-24	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0023515_33	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0023515_33	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0023515_33	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0023515_34	K22300	56.7	5.5e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0023515_34	phrog_2967	63.9	2.6e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0023515_34	UniRef90_A0A0M6WJ36	101.0	2.66e-25	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0023515_34	1321820.HMPREF1983_00958	67.8	0.00000000000533	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0023515_34	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0023515_34	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
KOfam	UHGV-0023515_35	K10716	110.9	1.3e-32	kch, trkA, mthK, pch; voltage-gated potassium channel	N/A
PHROG	UHGV-0023515_35	phrog_7872	145.1	4.1058e-43	N/A	unknown function
UniRef90	UHGV-0023515_35	UniRef90_A0A350VIR8	375.0	0	Ion transporter	N/A
eggNOG-mapper	UHGV-0023515_35	1211844.CBLM010000091_gene3165	207.0	0	Ion transport protein	N/A
Pfam	UHGV-0023515_35	PF00520	N/A	N/A	Ion transport protein	Ion_trans
COG	UHGV-0023515_35	COG0569	N/A	N/A	Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain	N/A
structural_annotation	UHGV-0023515_35	PF00520,NF040645	N/A	N/A	N/A	N/A
KOfam	UHGV-0023515_36	K06400	326.3	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0023515_36	phrog_95	354.5	0	integrase	integration and excision
UniRef90	UHGV-0023515_36	UniRef90_B0NAW3	626.0	0	DNA-invertase hin	N/A
eggNOG-mapper	UHGV-0023515_36	411468.CLOSCI_00582	626.0	0	Recombinase	N/A
Pfam	UHGV-0023515_36	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0023515_36	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0023515_36	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0023515_36	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0023515_36	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0023515_37	UniRef90_A0A1M7YC13	48.9	0.0000017	tRNA-2-methylthio-N6-dimethylallyladenosine synthase	N/A
eggNOG-mapper	UHGV-0023515_37	1449050.JNLE01000003_gene3708	63.2	0.0000000000417	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	N/A
COG	UHGV-0023515_37	COG0621	N/A	N/A	tRNA A37 methylthiotransferase MiaB	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0023515	Yes	27,284	45	82	1