vOTU vOTU-130008

vOTU: vOTU-130008

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-130008
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-01291 → vGENUS-08388 → vOTU-130008
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-1430043
Biosample ID	SAMD00036251
Genome length (bp)	30,934 bps
CheckV completeness	80.26% (Medium-quality)
CDS count	50
CDS density	92.87%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	1529	Host agreement	77.57
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	101	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 80.26)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1430043_1	phrog_9	298.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-1430043_1	UniRef90_A0A374NB45	808.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1430043_1	1235793.C809_01917	520.0	0	Phage Terminase	N/A
Pfam	UHGV-1430043_1	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1430043_1	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1430043_1	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1430043_1	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1430043_2	phrog_12	180.5	0	portal protein	head and packaging
UniRef90	UHGV-1430043_2	UniRef90_A0A374NAE1	766.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1430043_2	626523.GCWU000342_01027	406.0	0	Portal protein	N/A
Pfam	UHGV-1430043_2	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1430043_2	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1430043_2	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1430043_3	K01358	121.6	8.3e-36	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1430043_3	phrog_94	185.8	0	head maturation protease	head and packaging
UniRef90	UHGV-1430043_3	UniRef90_A0A374NBM3	397.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1430043_3	1203606.HMPREF1526_00979	179.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1430043_3	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1430043_3	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1430043_3	PF00574,MF_00444,NF011089,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1430043_4	phrog_10	150.4	1.54143e-44	major head protein	head and packaging
UniRef90	UHGV-1430043_4	UniRef90_A0A374N9V9	729.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1430043_4	1280689.AUJC01000011_gene1521	330.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-1430043_4	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1430043_4	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1430043_4	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1430043_4	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1430043_5	phrog_5223	54.9	0.0000000000000012	neck protein	connector
eggNOG-mapper	UHGV-1430043_5	931626.Awo_c31020	48.1	0.00000641	N/A	N/A
NCBIFam	UHGV-1430043_5	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-1430043_5	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1430043_6	phrog_1951	91.9	4e-27	head-tail adaptor	connector
UniRef90	UHGV-1430043_6	UniRef90_A0A374MZF9	205.0	0	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-1430043_6	1414720.CBYM010000040_gene1649	67.4	0.000000000000352	head-tail adaptor	N/A
COG	UHGV-1430043_6	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-1430043_6	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-1430043_7	UniRef90_UPI001A9B6FBF	163.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1430043_7	1414720.CBYM010000040_gene1650	132.0	1.1e-37	N/A	N/A
structural_annotation	UHGV-1430043_7	TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1430043_8	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1430043_9	phrog_885	134.7	5.6e-40	major tail protein	tail
UniRef90	UHGV-1430043_9	UniRef90_Q894J4	162.0	0	Conserved protein	N/A
eggNOG-mapper	UHGV-1430043_9	1321814.HMPREF9089_00935	174.0	0	N/A	N/A
structural_annotation	UHGV-1430043_9	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1430043_10	phrog_1021	50.6	0.0000000000000015	N/A	unknown function
PHROG	UHGV-1430043_12	phrog_23464	258.3	0	N/A	unknown function
eggNOG-mapper	UHGV-1430043_12	665950.HMPREF1025_02660	182.0	1.4013e-45	phage tail tape measure protein	N/A
COG	UHGV-1430043_12	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1430043_12	COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1430043_13	phrog_33	43.9	0.0000000000054	distal tail protein Dit	tail
UniRef90	UHGV-1430043_13	UniRef90_A0A1G5CPA2	115.0	1.13e-27	Phage-related protein	N/A
eggNOG-mapper	UHGV-1430043_13	1246.JMEA01000006_gene51	58.5	0.000000213	phage tail	N/A
COG	UHGV-1430043_13	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1430043_13	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1430043_14	phrog_1067	117.5	7e-35	minor head protein	head and packaging
UniRef90	UHGV-1430043_14	UniRef90_A0A348ZBV6	177.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1430043_14	1160721.RBI_I01574	129.0	8.22e-30	Prophage endopeptidase tail	N/A
Pfam	UHGV-1430043_14	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1430043_14	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1430043_14	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1430043_14	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-1430043_15	UniRef90_A0A374N9Y2	307.0	0	N/A	N/A
Pfam	UHGV-1430043_15	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-1430043_15	PF10651,PF08931,TIGR02268	N/A	N/A	N/A	N/A
PHROG	UHGV-1430043_17	phrog_199	75.8	4.8e-22	holin	lysis
UniRef90	UHGV-1430043_17	UniRef90_A0A2N0ULW7	260.0	0	Holin	N/A
eggNOG-mapper	UHGV-1430043_17	1160721.RBI_I01565	142.0	1.27995e-41	Bacteriophage holin family	N/A
Pfam	UHGV-1430043_17	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1430043_17	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1430043_17	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1430043_17	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-1430043_18	K01447	57.8	2.4e-16	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1430043_18	phrog_20388	307.2	0	endolysin	lysis
UniRef90	UHGV-1430043_18	UniRef90_A0A374N1L8	535.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1430043_18	1203606.HMPREF1526_00253	313.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1430043_18	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1430043_18	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1430043_18	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1430043_18	PF01510,PF01476,PF15591,MF_02014,MF_04111,MF_01354,NF008758,NF010723,TIGR00405,COG3023,COG5004,COG2139	N/A	N/A	N/A	N/A
PHROG	UHGV-1430043_19	phrog_1	41.6	0.00000000002	integrase	integration and excision
eggNOG-mapper	UHGV-1430043_19	997350.HMPREF9129_2147	57.8	0.0000000102	Phage integrase family	N/A
Pfam	UHGV-1430043_19	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1430043_19	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
KOfam	UHGV-1430043_20	K14059	52.8	0.0000000000000074	int; integrase	N/A
PHROG	UHGV-1430043_20	phrog_1	73.2	3.9e-21	integrase	integration and excision
UniRef90	UHGV-1430043_20	UniRef90_A0A374MXE7	596.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1430043_20	693746.OBV_41260	133.0	4.22e-33	Belongs to the 'phage' integrase family	N/A
COG	UHGV-1430043_20	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
PHROG	UHGV-1430043_21	phrog_4980	115.9	4.7e-36	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1430043_21	UniRef90_UPI000E52DA24	353.0	0	zinc ribbon domain-containing protein	N/A
eggNOG-mapper	UHGV-1430043_21	658086.HMPREF0994_06731	96.3	2.31e-19	Host cell surface-exposed lipoprotein	N/A
Pfam	UHGV-1430043_21	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-1430043_21	PF07553	N/A	N/A	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
COG	UHGV-1430043_21	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
KOfam	UHGV-1430043_23	K22300	51.8	0.000000000000018	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1430043_23	phrog_2328	42.4	0.0000000000081	transcriptional repressor	transcription regulation
UniRef90	UHGV-1430043_23	UniRef90_A0A373KVP1	107.0	1.17e-27	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1430043_23	525254.HMPREF0072_0267	79.0	2.79e-17	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-1430043_23	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1430043_23	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1430043_23	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1430043_26	phrog_585	112.9	2e-33	N/A	unknown function
UniRef90	UHGV-1430043_26	UniRef90_UPI00051C896C	142.0	1.88993e-41	N/A	N/A
eggNOG-mapper	UHGV-1430043_26	1033744.CAEL01000029_gene1306	129.0	2.34e-36	N/A	N/A
Pfam	UHGV-1430043_26	PF10711	N/A	N/A	N/A	DUF2513
structural_annotation	UHGV-1430043_26	PF10711,MF_01819,TIGR03433,COG3432	N/A	N/A	N/A	N/A
PHROG	UHGV-1430043_28	phrog_6058	42.4	0.0000000000078	N/A	unknown function
structural_annotation	UHGV-1430043_28	NF033787	N/A	N/A	N/A	N/A
KOfam	UHGV-1430043_30	K03546	55.5	5.1e-16	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-1430043_30	phrog_1499	480.1	0	N/A	unknown function
UniRef90	UHGV-1430043_30	UniRef90_A0A2N0UXU2	748.0	0	Chromosome segregation protein	N/A
eggNOG-mapper	UHGV-1430043_30	645991.Sgly_0320	503.0	0	domain protein	N/A
Pfam	UHGV-1430043_30	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-1430043_30	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1430043_30	TIGR03185,COG5293	N/A	N/A	N/A	N/A
PHROG	UHGV-1430043_32	phrog_124	266.1	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1430043_32	UniRef90_A0A2N0UXR5	701.0	0	Phage nucleotide-binding protein	N/A
eggNOG-mapper	UHGV-1430043_32	411462.DORLON_00811	434.0	0	AAA domain	N/A
Pfam	UHGV-1430043_32	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1430043_32	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-1430043_33	phrog_2698	176.6	0	N/A	unknown function
UniRef90	UHGV-1430043_33	UniRef90_UPI000F54335B	199.0	0	N/A	N/A
eggNOG-mapper	UHGV-1430043_33	742723.HMPREF9477_00927	139.0	7.44e-40	N/A	N/A
structural_annotation	UHGV-1430043_33	PF17426,NF005674	N/A	N/A	N/A	N/A
KOfam	UHGV-1430043_34	K17677	363.6	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-1430043_34	phrog_16	295.9	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1430043_34	UniRef90_A0A412ULZ3	1044.0	0	ATP-dependent helicase	N/A
eggNOG-mapper	UHGV-1430043_34	1235798.C817_03499	836.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-1430043_34	mREase_IV_00005	131.5	7.4e-39	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1430043_34	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1430043_34	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1430043_34	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-1430043_34	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
KOfam	UHGV-1430043_35	K07505	88.8	7.1e-26	repA; regulatory protein RepA	N/A
PHROG	UHGV-1430043_35	phrog_2597	568.7	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1430043_35	UniRef90_UPI000BBD449F	488.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1430043_35	294382.Q5YA88_9CAUD	465.0	0	hydrolase activity, acting on acid anhydrides	N/A
Pfam	UHGV-1430043_35	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
structural_annotation	UHGV-1430043_35	PF08707,PF16793,MF_00700,NF040561,COG1467	N/A	N/A	N/A	N/A
KOfam	UHGV-1430043_36	K07505	316.9	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-1430043_36	phrog_2597	581.7	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1430043_36	UniRef90_A0A2N0UXP7	758.0	0	Regulatory protein RepA	N/A
eggNOG-mapper	UHGV-1430043_36	394503.Ccel_3304	517.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-1430043_36	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-1430043_36	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-1430043_36	PF13481,MF_00348,NF006606,COG3598	N/A	N/A	N/A	N/A
PHROG	UHGV-1430043_37	phrog_16687	66.8	2.1e-19	N/A	unknown function
eggNOG-mapper	UHGV-1430043_37	1214217.ALNF01000014_gene1395	48.1	0.0000021	N/A	N/A
KOfam	UHGV-1430043_38	K01160	40.8	0.000000000053	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1430043_38	phrog_140	95.9	4.1e-28	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1430043_38	UniRef90_A0A2N0UXU6	262.0	0	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-1430043_38	411462.DORLON_00806	207.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1430043_38	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1430043_38	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1430043_38	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1430043_39	PF02559,MF_00667,TIGR02861	N/A	N/A	N/A	N/A
UniRef90	UHGV-1430043_42	UniRef90_UPI000E4DC4DA	139.0	2.61e-39	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-1430043_42	PF15597	N/A	N/A	N/A	N/A
KOfam	UHGV-1430043_43	K18830	52.3	0.000000000000014	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1430043_43	phrog_8	64.1	3.1e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1430043_43	UniRef90_A0A374N9T4	115.0	1.3e-32	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1430043_43	717605.Theco_0106	75.5	1.46e-16	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1430043_43	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1430043_43	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1430043_43	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1430043_47	UniRef90_A0A374MXG7	146.0	1.54143e-44	XRE family transcriptional regulator	N/A
Pfam	UHGV-1430043_47	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
PHROG	UHGV-1430043_48	phrog_119	56.1	5.5e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1430043_48	UniRef90_A0A374N9T6	214.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1430043_48	1235793.C809_01915	123.0	1.29e-34	HNH endonuclease	N/A
COG	UHGV-1430043_48	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1430043_50	phrog_4914	93.8	1.8e-27	terminase large subunit	head and packaging
UniRef90	UHGV-1430043_50	UniRef90_Q637A5	179.0	0	Terminase large subunit, N-terminal region	N/A
eggNOG-mapper	UHGV-1430043_50	1203606.HMPREF1526_00981	197.0	0	Terminase	N/A
Pfam	UHGV-1430043_50	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
COG	UHGV-1430043_50	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1430043	Yes	30,934	42	80	1