vOTU vOTU-130281

vOTU: vOTU-130281

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-130281
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00562 → vGENUS-00419 → vOTU-130281
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1526083
Biosample ID	SAMEA4378238
Genome length (bp)	27,760 bps
CheckV completeness	52.31% (Medium-quality)
CDS count	54
CDS density	83.53%
tRNA count	3
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis	Total connections	94	Host agreement	82.98
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis	Total connections	18	Host agreement	83.33

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 52.31)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1526083_1	phrog_20532	74.8	9.5e-22	N/A	unknown function
eggNOG-mapper	UHGV-1526083_1	665950.HMPREF1025_02555	90.1	6.04e-21	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
COG	UHGV-1526083_1	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
KOfam	UHGV-1526083_2	K07741	69.3	1.2e-19	antB; anti-repressor protein	N/A
PHROG	UHGV-1526083_2	phrog_130	240.8	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1526083_2	UniRef90_A0A396LJD2	335.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-1526083_2	198467.NP92_02765	248.0	0	COG3617 Prophage antirepressor	N/A
Pfam	UHGV-1526083_2	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1526083_2	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1526083_2	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1526083_2	PF02498,PF03374,TIGR02681,COG3617	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1526083_9	1041142.ATTP01000043_gene5324	54.7	0.00000431	N/A	N/A
PHROG	UHGV-1526083_10	phrog_72	42.1	0.0000000000085	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1526083_10	UniRef90_A0A8D9PDS2	104.0	6.85e-25	NinB protein	N/A
eggNOG-mapper	UHGV-1526083_10	445972.ANACOL_01825	115.0	3.4e-30	N/A	N/A
structural_annotation	UHGV-1526083_10	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-1526083_11	phrog_7566	66.5	2.4e-19	N/A	unknown function
eggNOG-mapper	UHGV-1526083_11	693746.OBV_24070	55.5	0.000000032	N/A	N/A
KOfam	UHGV-1526083_12	K03111	135.5	5.70001e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1526083_12	phrog_44	146.8	1.09301e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1526083_12	UniRef90_A0A354L2I3	197.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1526083_12	411471.SUBVAR_04646	169.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1526083_12	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1526083_12	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1526083_12	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1526083_12	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1526083_12	PF00436,MF_00984,NF005242,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1526083_13	phrog_270	113.5	2.3e-33	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1526083_13	UniRef90_UPI001F1B43AF	180.0	0	GntR family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1526083_13	742733.HMPREF9469_01845	110.0	3.16e-26	N/A	N/A
structural_annotation	UHGV-1526083_13	PF07106,MF_01177,TIGR01714,COG5529	N/A	N/A	N/A	N/A
KOfam	UHGV-1526083_14	K02314	227.4	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1526083_14	phrog_19	235.3	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1526083_14	UniRef90_UPI000C7E331E	258.0	0	replicative DNA helicase	N/A
eggNOG-mapper	UHGV-1526083_14	665956.HMPREF1032_01442	141.0	1.48e-34	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1526083_14	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-1526083_14	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1526083_14	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1526083_14	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-1526083_17	K00390	105.2	4.9e-31	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1526083_17	phrog_424	122.4	1.4e-36	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1526083_17	UniRef90_UPI0009E1B041	384.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1526083_17	1408437.JNJN01000032_gene2312	380.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-1526083_17	BrxP_00001	67.2	1.8e-19	BrxP	BREX
Pfam	UHGV-1526083_17	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1526083_17	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1526083_17	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-1526083_18	K01160	54.0	0.0000000000000047	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1526083_18	phrog_34	58.8	1.1e-16	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1526083_18	UniRef90_UPI0018ABA1B6	154.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1526083_18	875454.BAEW01000002_gene491	109.0	4.26e-29	Endodeoxyribonuclease RusA	N/A
COG	UHGV-1526083_18	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1526083_18	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1526083_19	phrog_757	51.5	0.000000000000014	DNA methyltransferase	other
UniRef90	UHGV-1526083_19	UniRef90_A0A7J2R6L5	65.9	0.000000000000358	DNA cytosine methyltransferase (Fragment)	N/A
eggNOG-mapper	UHGV-1526083_19	748224.HMPREF9436_03069	99.0	4.35e-25	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1526083_19	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-1526083_20	phrog_757	134.7	5.1e-40	DNA methyltransferase	other
UniRef90	UHGV-1526083_20	UniRef90_UPI001CBD79D0	290.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1526083_20	748224.HMPREF9436_03069	283.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1526083_20	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-1526083_25	phrog_9958	101.0	8.6e-30	N/A	unknown function
UniRef90	UHGV-1526083_25	UniRef90_UPI001D08A241	142.0	1.08e-39	N/A	N/A
eggNOG-mapper	UHGV-1526083_25	1160721.RBI_I01591	124.0	4.06e-33	N/A	N/A
structural_annotation	UHGV-1526083_25	PF19789	N/A	N/A	N/A	N/A
KOfam	UHGV-1526083_33	K01520	134.4	8.5e-40	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-1526083_33	phrog_135	119.3	2.4e-35	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1526083_33	UniRef90_R6ILQ3	168.0	0	Deoxyuridine 5'-triphosphate nucleotidohydrolase	N/A
eggNOG-mapper	UHGV-1526083_33	1282887.AUJG01000016_gene1113	138.0	6.09e-39	N/A	N/A
Pfam	UHGV-1526083_33	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-1526083_33	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-1526083_33	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-1526083_33	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
KOfam	UHGV-1526083_34	K00571	66.0	6.6e-19	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1526083_34	phrog_12862	142.1	2.20004e-42	N/A	unknown function
UniRef90	UHGV-1526083_34	UniRef90_UPI001E530B79	152.0	6.72623e-44	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-1526083_34	2754.EH55_02975	140.0	8.89001e-40	N-4 methylation of cytosine	N/A
PADLOC	UHGV-1526083_34	MTase_II_00037	147.2	1.79366e-43	Type II methyltransferase	RM
COG	UHGV-1526083_34	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1526083_34	PF01555,MF_01057,NF010253,COG0863	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1526083_35	PF16677	N/A	N/A	N/A	N/A
UniRef90	UHGV-1526083_36	UniRef90_UPI0012ABADBF	50.4	0.00000105	Arc family DNA-binding protein	N/A
structural_annotation	UHGV-1526083_36	PF08681	N/A	N/A	N/A	N/A
PHROG	UHGV-1526083_39	phrog_38	186.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-1526083_39	UniRef90_A0A810QA10	692.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1526083_39	1298920.KI911353_gene2682	408.0	0	TIGRFAM Phage	N/A
NCBIFam	UHGV-1526083_39	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-1526083_39	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1526083_39	PF17289,PF04466,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
PHROG	UHGV-1526083_41	phrog_64	222.4	0	portal protein	head and packaging
UniRef90	UHGV-1526083_41	UniRef90_A0A845RCM8	451.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1526083_41	1123263.AUKY01000015_gene1609	317.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1526083_41	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1526083_41	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1526083_42	phrog_115	44.7	0.0000000000016	minor head protein	head and packaging
UniRef90	UHGV-1526083_42	UniRef90_A0A1C5WCC8	187.0	0	Phage head morphogenesis protein, SPP1 gp7 family	N/A
eggNOG-mapper	UHGV-1526083_42	1121451.DESAM_10288	60.1	0.000000000932	head morphogenesis protein, SPP1 gp7	N/A
NCBIFam	UHGV-1526083_42	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-1526083_42	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1526083_42	PF04233,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-1526083_45	phrog_29	209.6	0	major head protein	head and packaging
UniRef90	UHGV-1526083_45	UniRef90_A0A7X5DZ98	465.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1526083_45	1232453.BAIF02000058_gene1628	266.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1526083_45	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1526083_45	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-1526083_47	UniRef90_UPI000F546010	100.0	1.19e-25	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-1526083_47	1298920.KI911353_gene2658	57.0	0.00000000341	N/A	N/A
Pfam	UHGV-1526083_47	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-1526083_47	TIGR01560	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1526083_48	1298920.KI911353_gene2656	51.2	0.0000019	N/A	N/A
structural_annotation	UHGV-1526083_48	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1526083_50	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
UniRef90	UHGV-1526083_51	UniRef90_R6HYI8	63.9	0.000000000333	Major tail protein putative	N/A
structural_annotation	UHGV-1526083_51	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-1526083_52	UniRef90_UPI00041AF7E2	79.3	4.87e-17	N/A	N/A
eggNOG-mapper	UHGV-1526083_52	1123263.AUKY01000015_gene1618	79.3	8.17e-18	N/A	N/A
Pfam	UHGV-1526083_52	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-1526083_52	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1526083_53	1121333.JMLH01000047_gene1011	75.9	1.91e-16	N/A	N/A
KOfam	UHGV-1526083_54	K05337	58.5	1.7e-16	fer; ferredoxin	N/A
UniRef90	UHGV-1526083_54	UniRef90_A0A348SZW7	130.0	1.45e-38	Ferredoxin	N/A
eggNOG-mapper	UHGV-1526083_54	591001.Acfer_1410	75.9	1.17e-17	electron transfer activity	N/A
Pfam	UHGV-1526083_54	PF13370	N/A	N/A	4Fe-4S single cluster domain of Ferredoxin I	Fer4_13
COG	UHGV-1526083_54	COG1141	N/A	N/A	Ferredoxin	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1526083	Yes	27,760	50	52	1
UHGV-0116893	No	27,223	50	51	1