vOTU vOTU-130361

vOTU: vOTU-130361

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-130361
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea → Dorea formicigenerans
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00321 → vGENUS-00985 → vOTU-130361
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea → Dorea formicigenerans
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0035566
Biosample ID	N/A
Genome length (bp)	24,153 bps
CheckV completeness	69.79% (Medium-quality)
CDS count	51
CDS density	86.00%
tRNA count	7
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea → Dorea formicigenerans	Total connections	40	Host agreement	85
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea → Dorea formicigenerans	Total connections	18	Host agreement	94.44

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 69.79)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0035566_2	UniRef90_UPI00040253E3	191.0	0	SAP domain-containing protein	N/A
Pfam	UHGV-0035566_2	PF02037	N/A	N/A	SAP domain	SAP
structural_annotation	UHGV-0035566_2	PF21169	N/A	N/A	N/A	N/A
UniRef90	UHGV-0035566_3	UniRef90_UPI00156FB996	271.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0035566_3	1307436.PBF_22103	92.0	1.19e-20	N/A	N/A
structural_annotation	UHGV-0035566_3	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0035566_4	phrog_5509	88.5	6e-26	neck protein	connector
UniRef90	UHGV-0035566_4	UniRef90_W0FMR6	116.0	8.48e-31	Gp9 protein	N/A
eggNOG-mapper	UHGV-0035566_4	1450694.BTS2_0537	73.2	0.0000000000000136	N/A	N/A
structural_annotation	UHGV-0035566_4	TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035566_5	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0035566_6	phrog_5635	49.4	0.000000000000088	head-tail adaptor	connector
eggNOG-mapper	UHGV-0035566_6	1347392.CCEZ01000045_gene13	56.2	0.0000000106	N/A	N/A
NCBIFam	UHGV-0035566_6	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0035566_6	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0035566_8	phrog_10	106.0	2.9e-31	major head protein	head and packaging
UniRef90	UHGV-0035566_8	UniRef90_A0A415MTA6	781.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0035566_8	1384484.AEQU_1180	320.0	0	Phage capsid family	N/A
Pfam	UHGV-0035566_8	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0035566_8	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0035566_8	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0035566_8	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0035566_9	K01358	98.0	1.3e-28	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0035566_9	phrog_94	187.3	0	head maturation protease	head and packaging
UniRef90	UHGV-0035566_9	UniRef90_A0A415MTD8	493.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0035566_9	1235792.C808_00085	200.0	0	Clp protease	N/A
Pfam	UHGV-0035566_9	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0035566_9	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0035566_9	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0035566_10	phrog_12	92.8	2.6e-27	portal protein	head and packaging
UniRef90	UHGV-0035566_10	UniRef90_A0A415MTC5	732.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0035566_10	349161.Dred_2606	199.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0035566_10	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0035566_10	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0035566_10	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0035566_11	phrog_9	269.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0035566_11	UniRef90_A0A415MTC4	1125.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0035566_11	1211817.CCAT010000053_gene2129	589.0	0	Phage Terminase	N/A
Pfam	UHGV-0035566_11	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0035566_11	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0035566_11	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0035566_11	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0035566_12	phrog_5110	101.6	3.9e-30	terminase small subunit	head and packaging
UniRef90	UHGV-0035566_12	UniRef90_UPI00156D89BA	152.0	1.4013e-45	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0035566_12	610130.Closa_0740	112.0	1.66e-30	N/A	N/A
Pfam	UHGV-0035566_12	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0035566_12	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0035566_13	phrog_119	72.6	5.2e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035566_13	UniRef90_A0A415MTD9	233.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0035566_13	768710.DesyoDRAFT_1275	105.0	1.51e-27	HNH nucleases	N/A
Pfam	UHGV-0035566_13	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0035566_13	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
UniRef90	UHGV-0035566_14	UniRef90_A0A174BR74	87.4	2.09e-21	Chemotaxis protein	N/A
eggNOG-mapper	UHGV-0035566_14	1042156.CXIVA_01520	74.7	4.08e-17	N/A	N/A
structural_annotation	UHGV-0035566_14	NF008671,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-0035566_15	phrog_11237	100.9	1.2e-29	N/A	unknown function
eggNOG-mapper	UHGV-0035566_15	411461.DORFOR_01161	192.0	0	N/A	N/A
PHROG	UHGV-0035566_17	phrog_8684	101.9	9.3e-31	N/A	unknown function
UniRef90	UHGV-0035566_17	UniRef90_UPI000677CD2A	330.0	0	YopX family protein	N/A
eggNOG-mapper	UHGV-0035566_17	457412.RSAG_01162	179.0	0	YopX protein	N/A
Pfam	UHGV-0035566_17	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0035566_17	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0035566_17	PF09643,TIGR01671	N/A	N/A	N/A	N/A
KOfam	UHGV-0035566_20	K07171	78.8	8.8e-23	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	N/A
PHROG	UHGV-0035566_20	phrog_1936	108.2	4.2e-32	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0035566_20	UniRef90_UPI0015711440	185.0	0	type II toxin-antitoxin system PemK/MazF family toxin	N/A
eggNOG-mapper	UHGV-0035566_20	411461.DORFOR_01157	409.0	0	N/A	N/A
Pfam	UHGV-0035566_20	PF02452	N/A	N/A	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
COG	UHGV-0035566_20	COG2337	N/A	N/A	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	N/A
structural_annotation	UHGV-0035566_20	PF02452,NF007386,COG2337	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0035566_21	411461.DORFOR_01156	384.0	0	N/A	N/A
PHROG	UHGV-0035566_22	phrog_15198	44.7	0.000000000002	N/A	unknown function
UniRef90	UHGV-0035566_22	UniRef90_B0G4G8	206.0	0	N/A	N/A
eggNOG-mapper	UHGV-0035566_22	411461.DORFOR_01155	206.0	0	N/A	N/A
Pfam	UHGV-0035566_22	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0035566_23	phrog_924	43.4	0.0000000000067	N/A	unknown function
UniRef90	UHGV-0035566_23	UniRef90_UPI001D087239	209.0	0	N/A	N/A
Pfam	UHGV-0035566_23	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0035566_27	PF19005	N/A	N/A	N/A	N/A
UniRef90	UHGV-0035566_28	UniRef90_A0A8B3AJ48	105.0	1.4e-26	AsnC family protein	N/A
eggNOG-mapper	UHGV-0035566_28	97139.C824_05982	49.3	0.00000974	N/A	N/A
structural_annotation	UHGV-0035566_28	PF00196,TIGR04381,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-0035566_29	phrog_38110	118.7	1.4e-35	N/A	unknown function
PHROG	UHGV-0035566_30	phrog_31991	112.8	1.4e-33	N/A	unknown function
structural_annotation	UHGV-0035566_31	PF08169,MF_01549,TIGR00405	N/A	N/A	N/A	N/A
PHROG	UHGV-0035566_32	phrog_7566	101.4	4.2e-30	N/A	unknown function
eggNOG-mapper	UHGV-0035566_32	411461.DORFOR_01145	208.0	0	N/A	N/A
eggNOG-mapper	UHGV-0035566_33	411461.DORFOR_01144	59.7	0.000000000467	Belongs to the ParB family	N/A
COG	UHGV-0035566_33	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
PHROG	UHGV-0035566_35	phrog_531	46.5	0.00000000000071	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035566_35	UniRef90_A0A1M6MV17	147.0	4.83448e-43	Ribonuclease HI	N/A
eggNOG-mapper	UHGV-0035566_35	411461.DORFOR_01140	292.0	0	RNA-DNA hybrid ribonuclease activity	N/A
COG	UHGV-0035566_35	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0035566_35	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0035566_37	phrog_3584	128.7	4.1e-38	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0035566_37	411461.DORFOR_01138	475.0	0	N/A	N/A
structural_annotation	UHGV-0035566_37	PF01446	N/A	N/A	N/A	N/A
PHROG	UHGV-0035566_40	phrog_36464	61.7	1.5e-17	N/A	unknown function
eggNOG-mapper	UHGV-0035566_40	411461.DORFOR_01136	142.0	1.58347e-43	N/A	N/A
structural_annotation	UHGV-0035566_40	PF09035	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035566_42	PF11614,TIGR02588,COG2847	N/A	N/A	N/A	N/A
KOfam	UHGV-0035566_47	K18830	80.2	3.3e-23	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0035566_47	phrog_4	60.9	3.3e-17	transcriptional repressor	transcription regulation
UniRef90	UHGV-0035566_47	UniRef90_UPI0015714871	179.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0035566_47	1235792.C808_00054	122.0	4.22e-34	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0035566_47	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0035566_47	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0035566_47	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0035566_49	K23779	41.9	0.000000000019	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
UniRef90	UHGV-0035566_49	UniRef90_B0G4E1	112.0	1.25e-31	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0035566_49	411461.DORFOR_01128	112.0	2.09e-32	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0035566_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0035566_49	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0035566_50	phrog_32721	137.5	6.50006e-41	N/A	unknown function
eggNOG-mapper	UHGV-0035566_50	1391646.AVSU01000065_gene2762	142.0	5.34007e-41	N/A	N/A
structural_annotation	UHGV-0035566_50	PF21223,TIGR04209	N/A	N/A	N/A	N/A
KOfam	UHGV-0035566_51	K14059	180.7	0	int; integrase	N/A
PHROG	UHGV-0035566_51	phrog_1	160.2	0	integrase	integration and excision
UniRef90	UHGV-0035566_51	UniRef90_B0G4D9	715.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-0035566_51	411461.DORFOR_01126	715.0	0	Phage integrase family	N/A
Pfam	UHGV-0035566_51	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0035566_51	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0035566_51	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0035566_51	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0035566	Yes	24,153	41	70	1