vOTU vOTU-130504

vOTU: vOTU-130504

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-130504
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00381 → vGENUS-00754 → vOTU-130504
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger formicilis
Host range breadth	Species
Lifestyle	temperate (evidence: geNomad)

Representative genome
Genome ID	UHGV-0099745
Biosample ID	SAMEA3708512
Genome length (bp)	22,960 bps
CheckV completeness	66.56% (Medium-quality)
CDS count	35
CDS density	92.13%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger	Total connections	18	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger formicilis	Total connections	314	Host agreement	97.13

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 66.56)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0099745_1	K14059	133.9	2e-39	int; integrase	N/A
PHROG	UHGV-0099745_1	phrog_1	149.1	4.06377e-44	integrase	integration and excision
UniRef90	UHGV-0099745_1	UniRef90_A0A1Q6T3G6	749.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0099745_1	1203606.HMPREF1526_00215	135.0	1.09e-33	Phage integrase family	N/A
Pfam	UHGV-0099745_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0099745_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0099745_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0099745_2	K07339	61.9	1e-17	hicA; mRNA interferase HicA [EC:3.1.-.-]	N/A
PHROG	UHGV-0099745_2	phrog_353	84.8	5.7e-25	toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0099745_2	UniRef90_A0A1Q6T334	131.0	7.17e-39	Toxin HicA	N/A
eggNOG-mapper	UHGV-0099745_2	478749.BRYFOR_07601	87.4	2.95e-22	HicA toxin of bacterial toxin-antitoxin,	N/A
Pfam	UHGV-0099745_2	PF07927	N/A	N/A	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
COG	UHGV-0099745_2	COG1724	N/A	N/A	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	N/A
structural_annotation	UHGV-0099745_2	PF07927,COG1724	N/A	N/A	N/A	N/A
KOfam	UHGV-0099745_3	K18843	71.4	1.7e-20	hicB; antitoxin HicB	N/A
PHROG	UHGV-0099745_3	phrog_497	74.2	2.3e-21	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0099745_3	UniRef90_A0A1Q6T3W5	253.0	0	HicB family protein	N/A
eggNOG-mapper	UHGV-0099745_3	718252.FP2_04880	189.0	0	HicB_like antitoxin of bacterial toxin-antitoxin system	N/A
Pfam	UHGV-0099745_3	PF15919	N/A	N/A	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
COG	UHGV-0099745_3	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A
structural_annotation	UHGV-0099745_3	PF15919,COG1598	N/A	N/A	N/A	N/A
COG	UHGV-0099745_4	COG1669	N/A	N/A	Predicted nucleotidyltransferase MJ0435	N/A
PHROG	UHGV-0099745_6	phrog_10226	167.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0099745_6	431943.CKL_3226	140.0	5.35e-35	N/A	N/A
PHROG	UHGV-0099745_8	phrog_22683	154.7	0	N/A	unknown function
UniRef90	UHGV-0099745_8	UniRef90_A0A3E2U205	147.0	2.24208e-44	N/A	N/A
eggNOG-mapper	UHGV-0099745_8	482234.SCAZ3_03515	138.0	8.75952e-42	N/A	N/A
AcrCatalog	UHGV-0099745_8	cluster_3962	134.0	1.68156e-44	NA	N/A
Pfam	UHGV-0099745_8	PF13783	N/A	N/A	N/A	DUF4177
structural_annotation	UHGV-0099745_8	PF13783,NF008362,COG3499	N/A	N/A	N/A	N/A
KOfam	UHGV-0099745_9	K07451	56.7	4e-16	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0099745_9	phrog_589	60.1	4.1e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0099745_9	UniRef90_A0A415UM57	420.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0099745_9	386415.NT01CX_1757	335.0	0	HNH endonuclease	N/A
Pfam	UHGV-0099745_9	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0099745_9	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0099745_9	PF01844,NF040563,COG1403	N/A	N/A	N/A	N/A
KOfam	UHGV-0099745_10	K01356	151.4	8.40779e-45	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0099745_10	phrog_4	122.8	3.6e-36	transcriptional repressor	transcription regulation
UniRef90	UHGV-0099745_10	UniRef90_A0A6N8H052	360.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0099745_10	748224.HMPREF9436_01793	170.0	0	N/A	N/A
Pfam	UHGV-0099745_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0099745_10	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0099745_10	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0099745_10	PF00717,PF01381,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
UniRef90	UHGV-0099745_11	UniRef90_A0A6N8H2D7	118.0	1.06e-33	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0099745_11	469609.HMPREF0847_02166	48.5	0.00000164	N/A	N/A
structural_annotation	UHGV-0099745_11	PF05339,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0099745_15	phrog_10280	49.9	0.000000000000032	N/A	unknown function
eggNOG-mapper	UHGV-0099745_15	742738.HMPREF9460_02068	58.2	0.000000362	N/A	N/A
structural_annotation	UHGV-0099745_16	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0099745_17	phrog_72	50.2	0.000000000000036	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0099745_17	411471.SUBVAR_05829	215.0	0	N/A	N/A
Pfam	UHGV-0099745_17	PF05772	N/A	N/A	NinB protein	NinB
structural_annotation	UHGV-0099745_17	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0099745_18	phrog_7566	76.7	2.2e-22	N/A	unknown function
eggNOG-mapper	UHGV-0099745_18	411471.SUBVAR_05830	116.0	1.69e-32	N/A	N/A
KOfam	UHGV-0099745_19	K03111	137.0	2.2e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0099745_19	phrog_44	140.5	1.10002e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0099745_19	UniRef90_A0A1Q6T3F1	289.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0099745_19	411471.SUBVAR_04646	183.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0099745_19	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0099745_19	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0099745_19	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0099745_19	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0099745_19	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0099745_20	phrog_19658	76.0	5.1e-22	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0099745_20	UniRef90_A0A6N8H2D2	267.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0099745_20	411471.SUBVAR_05835	216.0	0	Helix-turn-helix domain	N/A
Pfam	UHGV-0099745_20	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0099745_20	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0099745_20	PF13730,MF_01909,TIGR04176,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-0099745_21	K02314	226.3	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0099745_21	phrog_19	209.3	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0099745_21	UniRef90_A0A1Q6T363	815.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0099745_21	411471.SUBVAR_05838	421.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0099745_21	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0099745_21	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0099745_21	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0099745_21	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-0099745_22	K03496	216.8	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0099745_22	phrog_164	163.3	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0099745_22	UniRef90_A0A1Q6T3I8	474.0	0	AAA_31 domain-containing protein	N/A
eggNOG-mapper	UHGV-0099745_22	411471.SUBVAR_05839	280.0	0	AAA domain	N/A
Pfam	UHGV-0099745_22	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0099745_22	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0099745_22	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0099745_23	K03497	95.0	1.4e-27	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0099745_23	phrog_4715	134.6	9.19994e-41	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0099745_23	UniRef90_A0A1Q6T350	857.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0099745_23	411471.SUBVAR_05842	379.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0099745_23	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0099745_23	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0099745_23	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0099745_25	1297617.JPJD01000059_gene2640	138.0	2.21999e-40	N/A	N/A
structural_annotation	UHGV-0099745_25	PF06530,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0099745_26	phrog_1281	135.9	1.7e-40	N/A	unknown function
UniRef90	UHGV-0099745_26	UniRef90_UPI00130E304C	151.0	1.96182e-44	N/A	N/A
eggNOG-mapper	UHGV-0099745_26	1123263.AUKY01000111_gene1090	125.0	5.49e-35	N/A	N/A
Pfam	UHGV-0099745_26	PF13274	N/A	N/A	Antitoxin SocA-like, Panacea domain	SocA_Panacea
COG	UHGV-0099745_26	COG3600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0099745_26	PF13274,COG3600	N/A	N/A	N/A	N/A
PHROG	UHGV-0099745_27	phrog_5763	59.9	1.2e-17	N/A	unknown function
eggNOG-mapper	UHGV-0099745_27	999413.HMPREF1094_00199	92.8	1.28e-18	N/A	N/A
PHROG	UHGV-0099745_28	phrog_338	53.1	0.0000000000000068	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0099745_28	UniRef90_UPI0015F33F36	204.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0099745_28	748224.HMPREF9436_01465	204.0	0	N/A	N/A
UniRef90	UHGV-0099745_29	UniRef90_R6GFM0	75.1	5.71e-16	Conserved domain protein	N/A
structural_annotation	UHGV-0099745_29	PF19962	N/A	N/A	N/A	N/A
PHROG	UHGV-0099745_30	phrog_9	164.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0099745_30	UniRef90_UPI001F1A3C47	629.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0099745_30	748224.HMPREF9436_01467	761.0	0	phage terminase, large subunit	N/A
COG	UHGV-0099745_30	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0099745_30	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0099745_31	phrog_104	226.0	0	portal protein	head and packaging
UniRef90	UHGV-0099745_31	UniRef90_A0A3E2U200	717.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0099745_31	748224.HMPREF9436_01468	701.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0099745_31	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0099745_31	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0099745_32	phrog_193	120.0	2.3e-35	head maturation protease	head and packaging
UniRef90	UHGV-0099745_32	UniRef90_A0A6N8H118	348.0	0	CdiA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0099745_32	748224.HMPREF9436_01469	309.0	0	N/A	N/A
COG	UHGV-0099745_32	COG5529	N/A	N/A	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	N/A
eggNOG-mapper	UHGV-0099745_33	1304866.K413DRAFT_0808	72.4	7.61e-16	N/A	N/A
structural_annotation	UHGV-0099745_33	PF10827	N/A	N/A	N/A	N/A
PHROG	UHGV-0099745_34	phrog_3675	110.1	9e-33	N/A	unknown function
UniRef90	UHGV-0099745_34	UniRef90_A0A0E4H649	115.0	4.17e-31	YjcQ protein	N/A
eggNOG-mapper	UHGV-0099745_34	1120978.KB894082_gene1061	127.0	1.86e-36	YjcQ protein	N/A
Pfam	UHGV-0099745_34	PF09639	N/A	N/A	YjcQ protein	YjcQ
structural_annotation	UHGV-0099745_34	PF09639,TIGR04176,COG2345	N/A	N/A	N/A	N/A
PHROG	UHGV-0099745_35	phrog_194	80.0	4.1e-23	head scaffolding protein	head and packaging
UniRef90	UHGV-0099745_35	UniRef90_D4K444	166.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0099745_35	748224.HMPREF9436_03336	184.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-0099745_35	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0099745_35	PF06810,MF_02110	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0099745	Yes	22,960	56	67	1