vOTU vOTU-130617

vOTU: vOTU-130617

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-130617
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia
Taxonomy (UHGV)	vFAM-00027 → vSUBFAM-00865 → vGENUS-00812 → vOTU-130617
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter faecis
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1425455
Biosample ID	SAMN02334057
Genome length (bp)	33,965 bps
CheckV completeness	68.13% (Medium-quality)
CDS count	63
CDS density	90.74%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter faecis	Total connections	193	Host agreement	96.37
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia	Total connections	3	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 68.13)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1425455_1	phrog_19074	361.3	0	N/A	unknown function
UniRef90	UHGV-1425455_1	UniRef90_A0A417WXG2	296.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1425455_1	536233.CLO_0550	280.0	0	phage tail tape measure protein	N/A
Pfam	UHGV-1425455_1	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1425455_1	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1425455_1	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-1425455_2	phrog_6541	59.8	3e-17	N/A	unknown function
eggNOG-mapper	UHGV-1425455_2	1121342.AUCO01000012_gene1686	47.8	0.00000314	N/A	N/A
PHROG	UHGV-1425455_3	phrog_6280	128.5	3e-38	N/A	unknown function
UniRef90	UHGV-1425455_3	UniRef90_A0A8J6PH67	117.0	6.23e-31	Esterase	N/A
eggNOG-mapper	UHGV-1425455_3	445335.CBN_3078	108.0	2.09e-28	N/A	N/A
PHROG	UHGV-1425455_4	phrog_6686	103.1	1.5e-30	tail tube protein	tail
UniRef90	UHGV-1425455_4	UniRef90_A0A1C6KI12	152.0	2.59941e-42	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1425455_4	871584.D9ZNE2_9CAUD	77.0	0.00000000000000908	N/A	N/A
structural_annotation	UHGV-1425455_4	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1425455_5	phrog_7585	60.6	3.1e-17	N/A	unknown function
eggNOG-mapper	UHGV-1425455_5	748727.CLJU_c31260	65.9	0.00000000000557	N/A	N/A
structural_annotation	UHGV-1425455_5	PF05657,NF040576,COG3167	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1425455_6	580331.Thit_1383	84.0	2.24e-19	N/A	N/A
structural_annotation	UHGV-1425455_6	PF04883,TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1425455_7	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1425455_8	phrog_4020	53.5	0.0000000000000036	N/A	unknown function
eggNOG-mapper	UHGV-1425455_8	1443122.Z958_05850	47.8	0.00000762	N/A	N/A
structural_annotation	UHGV-1425455_9	PF07498	N/A	N/A	N/A	N/A
PHROG	UHGV-1425455_10	phrog_29	254.0	0	major head protein	head and packaging
UniRef90	UHGV-1425455_10	UniRef90_A0A843GQH0	449.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-1425455_10	1158612.I580_01912	323.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1425455_10	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1425455_10	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1425455_11	phrog_909	72.9	3.7e-21	major head protein	head and packaging
eggNOG-mapper	UHGV-1425455_11	1158612.I580_01911	77.4	1.75e-16	N/A	N/A
structural_annotation	UHGV-1425455_11	PF02924	N/A	N/A	N/A	N/A
PHROG	UHGV-1425455_12	phrog_2303	70.9	1.5e-20	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-1425455_12	1121871.AUAT01000035_gene1288	61.6	0.00000000987	N/A	N/A
PHROG	UHGV-1425455_18	phrog_1657	174.1	0	head morphogenesis	head and packaging
UniRef90	UHGV-1425455_18	UniRef90_A0A1R5GR66	186.0	0	ADPrib_exo_Tox domain-containing protein	N/A
eggNOG-mapper	UHGV-1425455_18	1582149.A0A0A8WEF5_9CAUD	186.0	0	Phage Mu protein F like protein	N/A
structural_annotation	UHGV-1425455_18	PF04233,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-1425455_19	phrog_64	125.8	2.5e-37	portal protein	head and packaging
UniRef90	UHGV-1425455_19	UniRef90_A0A843GSM3	426.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1425455_19	59241.E7DNA2_BPDP1	94.4	1.57e-17	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1425455_19	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1425455_19	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-1425455_20	K17733	162.1	0	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	N/A
PHROG	UHGV-1425455_20	phrog_2649	151.6	5.60519e-45	endolysin	lysis
UniRef90	UHGV-1425455_20	UniRef90_UPI0018972856	232.0	0	M15 family metallopeptidase	N/A
eggNOG-mapper	UHGV-1425455_20	397290.C810_03258	201.0	0	D-alanyl-D-alanine carboxypeptidase	N/A
Pfam	UHGV-1425455_20	PF13539	N/A	N/A	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
COG	UHGV-1425455_20	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A
structural_annotation	UHGV-1425455_20	PF02557,PF18342,MF_01924,NF007557,COG4991,COG2173	N/A	N/A	N/A	N/A
PHROG	UHGV-1425455_21	phrog_443	56.8	6.1e-16	holin	lysis
UniRef90	UHGV-1425455_21	UniRef90_UPI000CF1F0AD	97.1	6.24e-25	holin	N/A
eggNOG-mapper	UHGV-1425455_21	626523.GCWU000342_01012	86.7	2.11e-21	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1425455_21	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1425455_21	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-1425455_23	K06909	283.6	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1425455_23	phrog_2	113.8	2.4e-33	terminase large subunit	head and packaging
UniRef90	UHGV-1425455_23	UniRef90_A0A349YI29	457.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1425455_23	1443122.Z958_p0035	440.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1425455_23	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1425455_23	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1425455_23	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1425455_23	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1425455_23	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-1425455_24	UniRef90_A0A6H1MM30	64.7	0.0000000000982	DNA packaging protein	N/A
structural_annotation	UHGV-1425455_24	PF16677	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1425455_33	PF14084	N/A	N/A	N/A	N/A
KOfam	UHGV-1425455_34	K03469	122.6	4.4e-36	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-1425455_34	phrog_531	140.9	6.30024e-42	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1425455_34	UniRef90_A0A060AKZ0	107.0	7.85e-27	Ribonuclease H	N/A
eggNOG-mapper	UHGV-1425455_34	1500386.A0A060AKZ0_9CAUD	107.0	1.32e-27	RNase H	N/A
Pfam	UHGV-1425455_34	PF00075	N/A	N/A	RNase H	RNase_H
structural_annotation	UHGV-1425455_34	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1425455_37	PF21138,NF009630,COG2375	N/A	N/A	N/A	N/A
PHROG	UHGV-1425455_38	phrog_2002	49.4	0.000000000000038	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-1425455_38	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
KOfam	UHGV-1425455_41	K09882	122.0	5.4e-36	cobS; cobaltochelatase CobS [EC:6.6.1.2]	N/A
PHROG	UHGV-1425455_41	phrog_249	176.2	0	porphyrin biosynthesis	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1425455_41	UniRef90_UPI001373859D	245.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1425455_41	278957.ABEA03000120_gene1205	160.0	1.62551e-43	Associated with various cellular activities	N/A
Pfam	UHGV-1425455_41	PF07728	N/A	N/A	AAA domain (dynein-related subfamily)	AAA_5
COG	UHGV-1425455_41	COG0714	N/A	N/A	MoxR-like ATPase	N/A
PHROG	UHGV-1425455_42	phrog_1909	147.5	6.86636e-44	N/A	unknown function
eggNOG-mapper	UHGV-1425455_42	1458697.W6E8E8_9CAUD	62.0	0.0000000381	N/A	N/A
PHROG	UHGV-1425455_44	phrog_159	41.0	0.00000000002	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-1425455_44	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
PHROG	UHGV-1425455_46	phrog_1706	55.5	8.3e-16	CRISPR/Cas system associated	DNA, RNA and nucleotide metabolism
COG	UHGV-1425455_46	COG1468	N/A	N/A	CRISPR/Cas system-associated exonuclease Cas4, RecB family	N/A
structural_annotation	UHGV-1425455_46	PF01930,MF_03030,TIGR00372,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-1425455_48	K01493	91.8	9.9e-27	comEB; dCMP deaminase [EC:3.5.4.12]	N/A
PHROG	UHGV-1425455_48	phrog_174	120.2	9e-36	dCMP deaminase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1425455_48	UniRef90_D3E3M5	212.0	0	CMP/dCMP deaminase	N/A
eggNOG-mapper	UHGV-1425455_48	634498.mru_1286	212.0	0	deaminase	N/A
PADLOC	UHGV-1425455_48	dCTPase	43.1	3.3e-18	N/A	N/A
Pfam	UHGV-1425455_48	PF00383	N/A	N/A	Cytidine and deoxycytidylate deaminase zinc-binding region	dCMP_cyt_deam_1
COG	UHGV-1425455_48	COG2131	N/A	N/A	Deoxycytidylate deaminase	N/A
structural_annotation	UHGV-1425455_48	PF00383,TIGR02571,COG2131	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1425455_50	445972.ANACOL_01837	55.5	0.0000000822	N/A	N/A
eggNOG-mapper	UHGV-1425455_52	428125.CLOLEP_01366	90.1	5.96e-23	N/A	N/A
KOfam	UHGV-1425455_54	K03553	178.6	0	recA; recombination protein RecA	N/A
PHROG	UHGV-1425455_54	phrog_97	177.6	0	UvsX-like recombinase	other
UniRef90	UHGV-1425455_54	UniRef90_A0A843GSV7	408.0	0	RECA_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1425455_54	1123500.ATUU01000001_gene371	141.0	2.58e-36	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	N/A
Pfam	UHGV-1425455_54	PF00154	N/A	N/A	recA bacterial DNA recombination protein	RecA
COG	UHGV-1425455_54	COG0468	N/A	N/A	RecA/RadA recombinase	N/A
structural_annotation	UHGV-1425455_54	PF00154,MF_00268,TIGR02012,COG0468	N/A	N/A	N/A	N/A
UniRef90	UHGV-1425455_57	UniRef90_A0A1T4M3S7	129.0	8.4e-36	Pyrimidine dimer DNA glycosylase /DNA-(Apurinic or apyrimidinic site) lyase	N/A
eggNOG-mapper	UHGV-1425455_57	1151292.QEW_2203	123.0	2.91e-34	Pyrimidine dimer DNA glycosylase	N/A
Pfam	UHGV-1425455_57	PF03013	N/A	N/A	Pyrimidine dimer DNA glycosylase	Pyr_excise
structural_annotation	UHGV-1425455_57	PF03013,TIGR02328	N/A	N/A	N/A	N/A
KOfam	UHGV-1425455_61	K02337	713.9	0	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	N/A
PHROG	UHGV-1425455_61	phrog_405	658.8	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1425455_61	UniRef90_A0A843GPT9	1199.0	0	DNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-1425455_61	224324.aq_1008	432.0	0	TIGRFAM DNA polymerase III, alpha subunit	N/A
Pfam	UHGV-1425455_61	PF02811	N/A	N/A	PHP domain	PHP
Pfam	UHGV-1425455_61	PF07733	N/A	N/A	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
Pfam	UHGV-1425455_61	PF17657	N/A	N/A	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
Pfam	UHGV-1425455_61	PF14579	N/A	N/A	Helix-hairpin-helix motif	HHH_6
NCBIFam	UHGV-1425455_61	TIGR00594.1	N/A	N/A	DNA polymerase III subunit alpha	N/A
COG	UHGV-1425455_61	COG0587	N/A	N/A	DNA polymerase III, alpha subunit	N/A
structural_annotation	UHGV-1425455_61	PF07733,PF02811,PF17657,PF14579,MF_01902,TIGR00594,COG0587	N/A	N/A	N/A	N/A
KOfam	UHGV-1425455_62	K00560	123.7	1.6e-36	thyA, TYMS; thymidylate synthase [EC:2.1.1.45]	N/A
PHROG	UHGV-1425455_62	phrog_5131	156.5	0	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1425455_62	UniRef90_A0A4Y5FGW2	181.0	0	Thymidylate synthase	N/A
eggNOG-mapper	UHGV-1425455_62	701347.Entcl_1076	145.0	2.38e-37	Thymidylate synthase	N/A
Pfam	UHGV-1425455_62	PF00303	N/A	N/A	Thymidylate synthase	Thymidylat_synt
COG	UHGV-1425455_62	COG0207	N/A	N/A	Thymidylate synthase	N/A
structural_annotation	UHGV-1425455_62	PF00303,MF_01686,NF002497,COG0207	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1425455	Yes	33,965	33	68	1