vOTU vOTU-130626

vOTU: vOTU-130626

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-130626
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00134 → vGENUS-00111 → vOTU-130626
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1377870
Biosample ID	SAMEA3665171
Genome length (bp)	22,342 bps
CheckV completeness	63.50% (Medium-quality)
CDS count	30
CDS density	93.32%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	1091	Host agreement	89
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	23	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 63.5)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1377870_1	phrog_824	144.3	3.69943e-43	N/A	unknown function
UniRef90	UHGV-1377870_1	UniRef90_A0A3D3D6C6	249.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1377870_1	397288.C806_00096	157.0	0	VRR_NUC	N/A
Pfam	UHGV-1377870_1	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-1377870_1	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-1377870_4	phrog_3584	151.8	4.2039e-45	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1377870_4	1235800.C819_00515	75.1	0.000000000000288	N/A	N/A
structural_annotation	UHGV-1377870_4	PF21578,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-1377870_5	phrog_31049	40.7	0.00000000000095	N/A	unknown function
eggNOG-mapper	UHGV-1377870_5	431943.CKL_4074	52.4	0.00000119	N/A	N/A
structural_annotation	UHGV-1377870_5	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1377870_6	phrog_119	69.1	6.6e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1377870_6	UniRef90_A0A412ULY9	221.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1377870_6	1158607.UAU_01026	99.8	8.3e-26	HNH endonuclease	N/A
Pfam	UHGV-1377870_6	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1377870_6	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1377870_7	phrog_5110	83.8	1.4e-24	terminase small subunit	head and packaging
UniRef90	UHGV-1377870_7	UniRef90_A0A4U7JDP0	114.0	8.67e-31	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-1377870_7	1211817.CCAT010000053_gene2128	100.0	4.45e-26	N/A	N/A
Pfam	UHGV-1377870_7	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1377870_7	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1377870_8	phrog_9	287.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-1377870_8	UniRef90_A0A412UM03	1039.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1377870_8	86416.Clopa_0337	614.0	0	Phage Terminase	N/A
Pfam	UHGV-1377870_8	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1377870_8	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1377870_8	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1377870_8	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1377870_9	phrog_12	103.0	2.3e-30	portal protein	head and packaging
UniRef90	UHGV-1377870_9	UniRef90_A0A412ULV9	735.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1377870_9	349161.Dred_2606	265.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1377870_9	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1377870_9	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1377870_9	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1377870_9	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1377870_10	K01358	135.4	5.5e-40	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1377870_10	phrog_94	205.3	0	head maturation protease	head and packaging
UniRef90	UHGV-1377870_10	UniRef90_A0A412ULU1	444.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1377870_10	1211817.CCAT010000053_gene2131	174.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1377870_10	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1377870_10	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1377870_10	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1377870_11	phrog_10	107.8	1.2e-31	major head protein	head and packaging
UniRef90	UHGV-1377870_11	UniRef90_A0A412ULW9	599.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1377870_11	349161.Dred_2604	320.0	0	Phage capsid family	N/A
Pfam	UHGV-1377870_11	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1377870_11	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1377870_11	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1377870_11	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1377870_12	phrog_749	56.6	4.2e-16	N/A	unknown function
UniRef90	UHGV-1377870_12	UniRef90_A0A1G5CMX8	107.0	4.3e-28	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-1377870_12	1211817.CCAT010000053_gene2133	58.5	0.000000000825	N/A	N/A
PHROG	UHGV-1377870_13	phrog_19734	75.3	7e-22	N/A	unknown function
UniRef90	UHGV-1377870_13	UniRef90_UPI00057FE645	59.3	0.00000000455	phage head closure protein	N/A
eggNOG-mapper	UHGV-1377870_13	86416.Clopa_0343	62.0	0.0000000000824	N/A	N/A
NCBIFam	UHGV-1377870_13	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-1377870_13	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1377870_14	272623.L59277	50.1	0.00000236	N/A	N/A
structural_annotation	UHGV-1377870_14	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
UniRef90	UHGV-1377870_15	UniRef90_UPI000E5564A4	268.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1377870_15	1235792.C808_00089	51.2	0.0000031	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1377870_15	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1377870_15	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1377870_16	phrog_88	78.7	8.4e-23	major tail protein	tail
UniRef90	UHGV-1377870_16	UniRef90_A0A1G5CNS8	152.0	3.26503e-43	Phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1377870_16	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1377870_16	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1377870_17	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-1377870_18	K20478	69.9	8.1e-21	GOLGB1; golgin subfamily B member 1	N/A
PHROG	UHGV-1377870_18	phrog_1272	246.2	0	tail length tape measure protein	tail
UniRef90	UHGV-1377870_18	UniRef90_A0A412ULX0	1429.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1377870_18	588581.Cpap_1264	195.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-1377870_18	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-1377870_18	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1377870_18	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1377870_19	phrog_33	81.2	2.2e-23	distal tail protein Dit	tail
UniRef90	UHGV-1377870_19	UniRef90_A0A1G5CPA2	132.0	9.3e-34	Phage-related protein	N/A
eggNOG-mapper	UHGV-1377870_19	1160721.RBI_I01575	93.6	4.88e-20	Phage tail protein	N/A
COG	UHGV-1377870_19	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1377870_19	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1377870_20	phrog_1067	100.6	3.7e-30	minor head protein	head and packaging
UniRef90	UHGV-1377870_20	UniRef90_A0A1G5CPD2	150.0	7.52e-38	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-1377870_20	1462527.CCDM010000003_gene3730	57.0	0.00000774	gp58-like protein	N/A
Pfam	UHGV-1377870_20	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1377870_20	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1377870_20	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1377870_20	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-1377870_21	UniRef90_A0A374N9Y2	209.0	0	N/A	N/A
structural_annotation	UHGV-1377870_21	PF10651,PF08931,TIGR02268	N/A	N/A	N/A	N/A
PHROG	UHGV-1377870_23	phrog_1863	70.3	2.3e-21	N/A	unknown function
UniRef90	UHGV-1377870_23	UniRef90_UPI001F223E8B	103.0	2.53e-27	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-1377870_23	1226322.HMPREF1545_04027	74.7	1.09e-16	N/A	N/A
PHROG	UHGV-1377870_24	phrog_443	65.8	1.1e-18	holin	lysis
UniRef90	UHGV-1377870_24	UniRef90_R6R2Q3	90.1	2.22e-22	Conserved domain protein	N/A
eggNOG-mapper	UHGV-1377870_24	626523.GCWU000342_01012	82.0	1.15e-19	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1377870_24	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1377870_24	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-1377870_25	phrog_419	88.1	1.1e-27	N/A	unknown function
UniRef90	UHGV-1377870_25	UniRef90_UPI001E40EA70	104.0	3.61e-28	PGDYG domain-containing protein	N/A
eggNOG-mapper	UHGV-1377870_25	596323.HMPREF0554_0262	106.0	6.62e-30	N/A	N/A
structural_annotation	UHGV-1377870_25	PF14083	N/A	N/A	N/A	N/A
KOfam	UHGV-1377870_26	K01447	59.3	8.1e-17	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1377870_26	phrog_20388	307.3	0	endolysin	lysis
UniRef90	UHGV-1377870_26	UniRef90_A0A374N1L8	540.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1377870_26	1203606.HMPREF1526_00253	318.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1377870_26	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1377870_26	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1377870_26	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1377870_26	PF01510,PF01476,PF15591,MF_02014,MF_04111,MF_01354,NF008758,NF010723,TIGR00405,COG3023,COG5004,COG2139	N/A	N/A	N/A	N/A
KOfam	UHGV-1377870_27	K00571	175.6	0	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1377870_27	phrog_67	156.5	0	DNA methyltransferase	other
UniRef90	UHGV-1377870_27	UniRef90_A0A374DDR5	453.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1377870_27	877240.E1AC06_9CAUD	249.0	0	helicase activity	N/A
PADLOC	UHGV-1377870_27	MTase_II_00157	168.0	0	Type II methyltransferase	RM
Pfam	UHGV-1377870_27	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
structural_annotation	UHGV-1377870_27	PF01555,MF_02217,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1377870_28	phrog_10678	40.3	0.000000000024	N/A	unknown function

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1377870	Yes	22,342	40	64	1