vOTU vOTU-131458

vOTU: vOTU-131458

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-131458
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Merdivicinus → Merdivicinus sp900555435
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-04878 → vOTU-131458
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae
Host range breadth	Family
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0038748
Biosample ID	SAMEA4969195
Genome length (bp)	22,925 bps
CheckV completeness	56.65% (Medium-quality)
CDS count	33
CDS density	94.59%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae	Total connections	6	Host agreement	83.33
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Merdivicinus → Merdivicinus sp900555435	Total connections	5	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 56.65)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0038748_1	K01297	138.2	7.39998e-41	ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]	N/A
PHROG	UHGV-0038748_1	phrog_6292	64.3	1.6e-18	N/A	unknown function
UniRef90	UHGV-0038748_1	UniRef90_UPI000F52D738	253.0	0	LD-carboxypeptidase	N/A
eggNOG-mapper	UHGV-0038748_1	658086.HMPREF0994_02730	216.0	0	LD-carboxypeptidase	N/A
Pfam	UHGV-0038748_1	PF02016	N/A	N/A	LD-carboxypeptidase N-terminal domain	Peptidase_S66
Pfam	UHGV-0038748_1	PF17676	N/A	N/A	LD-carboxypeptidase C-terminal domain	Peptidase_S66C
COG	UHGV-0038748_1	COG1619	N/A	N/A	Muramoyltetrapeptide carboxypeptidase LdcA (peptidoglycan recycling)	N/A
PHROG	UHGV-0038748_2	phrog_7854	79.4	5.5e-31	endolysin	lysis
UniRef90	UHGV-0038748_2	UniRef90_A0A316L5D3	271.0	0	Pept_C1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0038748_2	1235835.C814_03519	62.4	0.00000000897	domain protein	N/A
Pfam	UHGV-0038748_2	PF00112	N/A	N/A	Papain family cysteine protease	Peptidase_C1
Pfam	UHGV-0038748_2	PF01473	N/A	N/A	Putative cell wall binding repeat	Choline_bind_1
Pfam	UHGV-0038748_2	PF19127	N/A	N/A	Choline-binding repeat	Choline_bind_3
COG	UHGV-0038748_2	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
structural_annotation	UHGV-0038748_2	PF00112,PF19127,TIGR04035,COG4870	N/A	N/A	N/A	N/A
KOfam	UHGV-0038748_3	K19304	92.8	4.7e-27	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0038748_3	phrog_7767	86.1	4e-25	metallo-endopeptidase	other
UniRef90	UHGV-0038748_3	UniRef90_A0A316LL83	154.0	1.82169e-44	Peptidase_M23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0038748_3	665956.HMPREF1032_00102	140.0	1.44e-38	heme binding	N/A
Pfam	UHGV-0038748_3	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-0038748_3	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0038748_3	PF01551,NF040883,COG0739	N/A	N/A	N/A	N/A
PHROG	UHGV-0038748_4	phrog_199	85.9	4.3e-25	holin	lysis
UniRef90	UHGV-0038748_4	UniRef90_R7GSN8	164.0	0	Toxin secretion/phage lysis holin	N/A
eggNOG-mapper	UHGV-0038748_4	1410670.JHXF01000015_gene2307	157.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0038748_4	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0038748_4	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0038748_4	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0038748_4	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0038748_5	PF09693	N/A	N/A	N/A	N/A
COG	UHGV-0038748_7	COG1345	N/A	N/A	Flagellar capping protein FliD	N/A
PHROG	UHGV-0038748_8	phrog_18725	45.0	0.000000000000087	N/A	unknown function
eggNOG-mapper	UHGV-0038748_8	1235797.C816_02657	56.6	0.000000148	N/A	N/A
COG	UHGV-0038748_8	COG3292	N/A	N/A	Periplasmic ligand-binding sensor domain	N/A
PHROG	UHGV-0038748_9	phrog_13879	219.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0038748_9	1226322.HMPREF1545_00061	338.0	0	N/A	N/A
structural_annotation	UHGV-0038748_9	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0038748_10	phrog_1194	49.7	0.000000000000059	N/A	unknown function
eggNOG-mapper	UHGV-0038748_10	693746.OBV_18200	172.0	0	N/A	N/A
structural_annotation	UHGV-0038748_10	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0038748_11	phrog_1535	188.6	0	tail length tape measure protein	tail
UniRef90	UHGV-0038748_11	UniRef90_A0A1C6JAZ8	440.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0038748_11	1232443.BAIA02000078_gene18	224.0	0	phage tail tape measure protein	N/A
COG	UHGV-0038748_11	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0038748_12	phrog_706	109.9	2.4e-32	N/A	unknown function
UniRef90	UHGV-0038748_12	UniRef90_UPI000682A80B	248.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0038748_12	693746.OBV_18170	220.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0038748_12	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0038748_12	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0038748_13	phrog_11299	75.7	7.4e-22	N/A	unknown function
eggNOG-mapper	UHGV-0038748_13	693746.OBV_18160	166.0	0	N/A	N/A
structural_annotation	UHGV-0038748_13	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0038748_14	phrog_3099	97.2	1.8e-28	N/A	unknown function
eggNOG-mapper	UHGV-0038748_14	1226322.HMPREF1545_00056	231.0	0	N/A	N/A
structural_annotation	UHGV-0038748_14	TIGR02126	N/A	N/A	N/A	N/A
PHROG	UHGV-0038748_15	phrog_3266	57.4	2.4e-16	tail completion	connector
eggNOG-mapper	UHGV-0038748_15	693746.OBV_18140	194.0	0	N/A	N/A
structural_annotation	UHGV-0038748_15	PF08873	N/A	N/A	N/A	N/A
PHROG	UHGV-0038748_16	phrog_556	72.2	6.2e-21	minor head protein	head and packaging
UniRef90	UHGV-0038748_16	UniRef90_UPI00195EF75A	105.0	8.26e-27	minor capsid protein	N/A
eggNOG-mapper	UHGV-0038748_16	1120998.AUFC01000030_gene2239	78.6	9.25e-17	Minor capsid protein	N/A
Pfam	UHGV-0038748_16	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0038748_16	PF11114	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0038748_17	PF20536,MF_01370,TIGR02126	N/A	N/A	N/A	N/A
PHROG	UHGV-0038748_18	phrog_541	63.4	3.4e-18	head-tail adaptor	connector
eggNOG-mapper	UHGV-0038748_18	693746.OBV_18110	135.0	7.51001e-40	N/A	N/A
PHROG	UHGV-0038748_19	phrog_212	255.1	0	major head protein	head and packaging
UniRef90	UHGV-0038748_19	UniRef90_A0A354MR33	537.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0038748_19	1232449.BAHV02000010_gene2714	337.0	0	N/A	N/A
structural_annotation	UHGV-0038748_19	PF05065,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0038748_20	phrog_194	85.0	1.2e-24	head scaffolding protein	head and packaging
UniRef90	UHGV-0038748_20	UniRef90_UPI00164D9F94	205.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0038748_20	693746.OBV_18080	166.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0038748_20	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0038748_20	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0038748_24	phrog_581	238.2	0	minor head protein	head and packaging
UniRef90	UHGV-0038748_24	UniRef90_UPI0006814CA4	496.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0038748_24	693746.OBV_18050	535.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0038748_24	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0038748_24	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0038748_24	PF06152,PF15887,TIGR01641,COG4307	N/A	N/A	N/A	N/A
PHROG	UHGV-0038748_25	phrog_533	197.1	0	portal protein	head and packaging
UniRef90	UHGV-0038748_25	UniRef90_UPI000680A1DB	470.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0038748_25	693746.OBV_18040	456.0	0	N/A	N/A
structural_annotation	UHGV-0038748_25	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0038748_27	K06909	419.0	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0038748_27	phrog_3717	154.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0038748_27	UniRef90_UPI00164D9352	664.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0038748_27	665956.HMPREF1032_02957	577.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0038748_27	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0038748_27	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0038748_27	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0038748_27	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0038748_27	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0038748_28	phrog_2412	85.2	7.6e-25	N/A	unknown function
eggNOG-mapper	UHGV-0038748_28	742738.HMPREF9460_02504	142.0	3.08986e-42	N/A	N/A
PHROG	UHGV-0038748_29	phrog_36	76.7	3.7e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-0038748_29	UniRef90_A0A3D3FGT2	107.0	3.63e-27	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0038748_29	1410624.JNKK01000017_gene1964	62.4	0.000000000192	sigma factor activity	N/A
Pfam	UHGV-0038748_29	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
COG	UHGV-0038748_29	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0038748_29	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0038748_30	phrog_478	130.0	9.3e-39	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0038748_30	UniRef90_R6E548	179.0	0	Prophage pi1 protein 29	N/A
eggNOG-mapper	UHGV-0038748_30	1123263.AUKY01000096_gene1821	80.9	7.57e-18	N/A	N/A
PHROG	UHGV-0038748_33	phrog_9958	58.5	1e-16	N/A	unknown function
eggNOG-mapper	UHGV-0038748_33	1519439.JPJG01000037_gene956	80.5	9.16e-17	N/A	N/A
Pfam	UHGV-0038748_33	PF19789	N/A	N/A	N/A	DUF6273

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0038748	Yes	22,925	58	57	1