vOTU vOTU-132193

vOTU: vOTU-132193

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-132193
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp900314705
Taxonomy (UHGV)	vFAM-00001 → vSUBFAM-00011 → vOTU-132193
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp900314705
Host range breadth	Species
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0210340
Biosample ID	N/A
Genome length (bp)	28,405 bps
CheckV completeness	60.25% (Medium-quality)
CDS count	30
CDS density	92.84%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp900314705	Total connections	3	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp900314705	Total connections	51	Host agreement	76.47

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 60.25)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0210340_1	K25307	153.9	1.4013e-45	wzb, etp; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]	N/A
PHROG	UHGV-0210340_1	phrog_12429	126.9	1.4e-37	N/A	unknown function
UniRef90	UHGV-0210340_1	UniRef90_R7NS83	313.0	0	Protein-tyrosine-phosphatase	N/A
eggNOG-mapper	UHGV-0210340_1	457412.RSAG_00533	218.0	0	Belongs to the low molecular weight phosphotyrosine protein phosphatase family	N/A
Pfam	UHGV-0210340_1	PF01451	N/A	N/A	Low molecular weight phosphotyrosine protein phosphatase	LMWPc
COG	UHGV-0210340_1	COG0394	N/A	N/A	Protein-tyrosine-phosphatase	N/A
structural_annotation	UHGV-0210340_1	PF01451,NF008486,COG0394	N/A	N/A	N/A	N/A
UniRef90	UHGV-0210340_2	UniRef90_A0A6N7X0B7	959.0	0	ApeA_NTD1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0210340_2	864565.HMPREF0379_0591	636.0	0	N/A	N/A
Pfam	UHGV-0210340_2	PF18862	N/A	N/A	ApeA N-terminal domain 1	ApeA_NTD1
Pfam	UHGV-0210340_2	PF18739	N/A	N/A	Apea-like HEPN	HEPN_Apea
eggNOG-mapper	UHGV-0210340_3	1408311.JNJM01000031_gene2483	714.0	0	N/A	N/A
eggNOG-mapper	UHGV-0210340_4	1203602.HMPREF1527_01156	251.0	0	N/A	N/A
KOfam	UHGV-0210340_5	K14059	216.4	0	int; integrase	N/A
PHROG	UHGV-0210340_5	phrog_1	221.4	0	integrase	integration and excision
UniRef90	UHGV-0210340_5	UniRef90_A0A1C6BNQ4	716.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0210340_5	476272.RUMHYD_01496	587.0	0	N/A	N/A
Pfam	UHGV-0210340_5	PF02920	N/A	N/A	DNA binding domain of tn916 integrase	Integrase_DNA
Pfam	UHGV-0210340_5	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0210340_5	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0210340_5	PF00589,PF02920,PF14659,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0210340_6	UniRef90_F3AFV1	117.0	5.13e-33	HTH_17 domain-containing protein	N/A
eggNOG-mapper	UHGV-0210340_6	478749.BRYFOR_09805	54.3	0.00000000847	N/A	N/A
Pfam	UHGV-0210340_6	PF09035	N/A	N/A	Excisionase from transposon Tn916	Tn916-Xis
structural_annotation	UHGV-0210340_6	PF09035,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0210340_7	phrog_16129	56.0	5.2e-16	excisionase	integration and excision
UniRef90	UHGV-0210340_7	UniRef90_UPI000C75A253	100.0	8.81e-27	N/A	N/A
eggNOG-mapper	UHGV-0210340_7	476272.RUMHYD_01493	86.7	7.84e-22	Excisionase from transposon Tn916	N/A
Pfam	UHGV-0210340_7	PF09035	N/A	N/A	Excisionase from transposon Tn916	Tn916-Xis
structural_annotation	UHGV-0210340_7	PF09035,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0210340_8	phrog_2308	161.2	0	N/A	unknown function
UniRef90	UHGV-0210340_8	UniRef90_UPI000C78AD36	210.0	0	RNA polymerase subunit sigma-70	N/A
eggNOG-mapper	UHGV-0210340_8	626939.HMPREF9443_02022	156.0	0	COG1961 Site-specific recombinases, DNA invertase Pin homologs	N/A
COG	UHGV-0210340_8	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0210340_8	PF06056,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-0210340_9	phrog_215	60.8	8.6e-19	structural protein with Ig domain	head and packaging
UniRef90	UHGV-0210340_9	UniRef90_R7I3Q1	146.0	8.8e-32	Putative RCC1 repeat domain protein	N/A
eggNOG-mapper	UHGV-0210340_9	552396.HMPREF0863_00621	99.4	9.42e-19	Bacterial group 2 Ig-like protein	N/A
Pfam	UHGV-0210340_9	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
Pfam	UHGV-0210340_9	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
COG	UHGV-0210340_9	COG5492	N/A	N/A	N/A	N/A
KOfam	UHGV-0210340_10	K01447	50.2	0.000000000000049	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0210340_10	phrog_20388	281.0	0	endolysin	lysis
UniRef90	UHGV-0210340_10	UniRef90_A0A348ZBW1	468.0	0	Cpl-7 domain-containing protein	N/A
eggNOG-mapper	UHGV-0210340_10	411490.ANACAC_00721	327.0	0	Cpl-7 lysozyme C-terminal domain protein	N/A
Pfam	UHGV-0210340_10	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0210340_10	PF08230	N/A	N/A	CW_7 repeat	CW_7
COG	UHGV-0210340_10	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0210340_10	PF08230,PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0210340_11	phrog_21233	108.1	3.4e-32	N/A	unknown function
UniRef90	UHGV-0210340_11	UniRef90_A0A348ZBW0	262.0	0	Holin	N/A
eggNOG-mapper	UHGV-0210340_11	908340.HMPREF9406_0179	201.0	0	toxin secretion phage lysis holin	N/A
Pfam	UHGV-0210340_11	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0210340_11	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0210340_11	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0210340_11	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0210340_14	phrog_1067	156.3	0	minor head protein	head and packaging
UniRef90	UHGV-0210340_14	UniRef90_A0A348ZBV6	670.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0210340_14	1160721.RBI_I01574	134.0	5.74e-32	Prophage endopeptidase tail	N/A
Pfam	UHGV-0210340_14	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0210340_14	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0210340_14	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0210340_14	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0210340_15	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0210340_16	phrog_58	191.3	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0210340_16	333138.LQ50_04250	364.0	0	Phage tail tape measure protein	N/A
COG	UHGV-0210340_16	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0210340_16	PF20155,COG5280	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0210340_17	290402.Cbei_1609	79.0	0.00000000000000319	N/A	N/A
PHROG	UHGV-0210340_18	phrog_2115	80.0	2.7e-23	tail protein	tail
eggNOG-mapper	UHGV-0210340_18	1216932.CM240_0624	181.0	0	N/A	N/A
structural_annotation	UHGV-0210340_18	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0210340_19	phrog_88	180.6	0	major tail protein	tail
UniRef90	UHGV-0210340_19	UniRef90_A0A348ZBV1	385.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0210340_19	1216932.CM240_0623	307.0	0	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0210340_19	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0210340_19	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0210340_19	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0210340_20	phrog_78	45.9	0.000000000001	tail terminator	connector
eggNOG-mapper	UHGV-0210340_20	1216932.CM240_0622	125.0	7.28e-36	High confidence in function and specificity	N/A
PHROG	UHGV-0210340_21	phrog_5	46.4	0.00000000000092	tail completion or Neck1 protein	connector
UniRef90	UHGV-0210340_21	UniRef90_R6MSS6	156.0	0	Phage protein HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0210340_21	431943.CKL_2636	154.0	0	TIGRFAM phage protein, HK97 gp10 family	N/A
Pfam	UHGV-0210340_21	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0210340_21	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0210340_21	TIGR01725	N/A	N/A	N/A	N/A
UniRef90	UHGV-0210340_22	UniRef90_A0A354HKU2	224.0	0	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0210340_22	1120978.KB894083_gene903	141.0	2.84043e-42	Phage head-tail joining protein	N/A
Pfam	UHGV-0210340_22	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
COG	UHGV-0210340_22	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0210340_22	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0210340_23	phrog_40	59.0	7e-17	head-tail adaptor Ad1	connector
UniRef90	UHGV-0210340_23	UniRef90_A0A354HKU1	210.0	0	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0210340_23	1235835.C814_01277	174.0	0	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0210340_23	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-0210340_23	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0210340_23	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0210340_24	phrog_10	310.8	0	major head protein	head and packaging
UniRef90	UHGV-0210340_24	UniRef90_A0A354HKU0	753.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0210340_24	1121334.KB911068_gene2291	610.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0210340_24	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0210340_24	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0210340_24	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0210340_24	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0210340_25	K01358	151.7	5.60519e-45	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0210340_25	phrog_94	249.6	0	head maturation protease	head and packaging
UniRef90	UHGV-0210340_25	UniRef90_A0A354HKT9	427.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0210340_25	1121334.KB911068_gene2290	326.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0210340_25	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0210340_25	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0210340_25	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0210340_26	phrog_12	413.8	0	portal protein	head and packaging
UniRef90	UHGV-0210340_26	UniRef90_A0A354HKT8	862.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0210340_26	1235802.C823_05278	701.0	0	Phage portal protein	N/A
Pfam	UHGV-0210340_26	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0210340_26	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0210340_26	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0210340_26	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0210340_27	K07473	71.7	1.5e-20	dinJ; DNA-damage-inducible protein J	N/A
PHROG	UHGV-0210340_27	phrog_2737	96.3	1.4e-28	N/A	unknown function
UniRef90	UHGV-0210340_27	UniRef90_A0A348ZBU3	194.0	0	Type II toxin-antitoxin system antitoxin, RelB/DinJ family	N/A
eggNOG-mapper	UHGV-0210340_27	908340.HMPREF9406_0165	163.0	0	RelB antitoxin	N/A
Pfam	UHGV-0210340_27	PF04221	N/A	N/A	RelB antitoxin	RelB
NCBIFam	UHGV-0210340_27	TIGR02384.1	N/A	N/A	type II toxin-antitoxin system RelB/DinJ family antitoxin	N/A
COG	UHGV-0210340_27	COG3077	N/A	N/A	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	N/A
structural_annotation	UHGV-0210340_27	PF04221,TIGR02384,COG3077	N/A	N/A	N/A	N/A
KOfam	UHGV-0210340_28	K19092	49.5	0.0000000000001	parE1_3_4; toxin ParE1/3/4	N/A
PHROG	UHGV-0210340_28	phrog_2455	93.4	1.6e-27	N/A	unknown function
UniRef90	UHGV-0210340_28	UniRef90_A0A348ZBU2	223.0	0	Type II toxin-antitoxin system RelE/ParE family toxin	N/A
eggNOG-mapper	UHGV-0210340_28	908340.HMPREF9406_0164	153.0	0	ParE toxin of type II toxin-antitoxin system, parDE	N/A
Pfam	UHGV-0210340_28	PF05016	N/A	N/A	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
NCBIFam	UHGV-0210340_28	TIGR02385.1	N/A	N/A	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	N/A
COG	UHGV-0210340_28	COG3668	N/A	N/A	Plasmid stabilization system protein ParE	N/A
structural_annotation	UHGV-0210340_28	PF05016,TIGR00053,COG3668	N/A	N/A	N/A	N/A
PHROG	UHGV-0210340_30	phrog_9	482.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0210340_30	UniRef90_A0A348ZBU0	1032.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0210340_30	665950.HMPREF1025_02650	936.0	0	Phage Terminase	N/A
Pfam	UHGV-0210340_30	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0210340_30	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0210340_30	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0210340_30	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0210340	Yes	28,405	34	60	1