vOTU vOTU-132239

vOTU: vOTU-132239

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-132239
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00087 → vSUBFAM-00289 → vGENUS-01322 → vOTU-132239
Host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-138 → SFEL01 → SFEL01 sp004557245
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0364544
Biosample ID	SAMN11265218
Genome length (bp)	35,564 bps
CheckV completeness	79.05% (Medium-quality)
CDS count	68
CDS density	87.74%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-138 → SFEL01 → SFEL01 sp004557245	Total connections	537	Host agreement	94.97
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-138 → SFEL01 → SFEL01 sp004557245	Total connections	10	Host agreement	70

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 79.05)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0364544_5	phrog_5	42.9	0.000000000012	tail completion or Neck1 protein	connector
UniRef90	UHGV-0364544_5	UniRef90_A0A6H1F582	55.5	0.000000568	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0364544_5	562981.HMPREF0428_01816	55.5	0.0000000997	N/A	N/A
PHROG	UHGV-0364544_9	phrog_1328	162.7	0	major head protein	head and packaging
UniRef90	UHGV-0364544_9	UniRef90_A0A7C7ERB8	282.0	0	N/A	N/A
eggNOG-mapper	UHGV-0364544_9	665956.HMPREF1032_03619	237.0	0	N/A	N/A
Pfam	UHGV-0364544_9	PF17236	N/A	N/A	N/A	DUF5309
structural_annotation	UHGV-0364544_9	PF17236,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0364544_10	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0364544_11	phrog_64	192.1	0	portal protein	head and packaging
UniRef90	UHGV-0364544_11	UniRef90_UPI001CD71C56	120.0	6.16e-26	phage portal protein	N/A
Pfam	UHGV-0364544_11	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0364544_11	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0364544_12	K06909	286.1	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0364544_12	phrog_5653	117.8	5.1e-35	terminase large subunit	head and packaging
UniRef90	UHGV-0364544_12	UniRef90_H2J4B5	274.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0364544_12	443254.Marpi_0320	274.0	0	Terminase RNAseH like domain	N/A
Pfam	UHGV-0364544_12	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0364544_12	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0364544_12	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0364544_12	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0364544_12	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0364544_15	phrog_13890	67.1	1.9e-19	N/A	unknown function
UniRef90	UHGV-0364544_15	UniRef90_A0A413FUM2	63.9	0.00000000000281	Antitoxin	N/A
eggNOG-mapper	UHGV-0364544_15	1235792.C808_00570	52.8	0.0000000197	N/A	N/A
Pfam	UHGV-0364544_15	PF03869	N/A	N/A	Arc-like DNA binding domain	Arc
structural_annotation	UHGV-0364544_15	PF10723,NF010256,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-0364544_18	phrog_13126	335.4	0	beta-1,4-glycosyltransferase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0364544_18	UniRef90_A0A1Q6Q8L1	353.0	0	Glycosyl transferase family 2	N/A
eggNOG-mapper	UHGV-0364544_18	1226322.HMPREF1545_03849	345.0	0	Glycosyl transferase, family 2	N/A
Pfam	UHGV-0364544_18	PF00535	N/A	N/A	Glycosyl transferase family 2	Glycos_transf_2
Pfam	UHGV-0364544_18	PF14559	N/A	N/A	Tetratricopeptide repeat	TPR_19
Pfam	UHGV-0364544_18	PF07719	N/A	N/A	Tetratricopeptide repeat	TPR_2
COG	UHGV-0364544_18	COG0463	N/A	N/A	Glycosyltransferase involved in cell wall bisynthesis	N/A
structural_annotation	UHGV-0364544_18	PF18768,PF13641,MF_00994,MF_00316,TIGR04195,COG0457,COG0463	N/A	N/A	N/A	N/A
KOfam	UHGV-0364544_19	K07741	114.0	2.9e-33	antB; anti-repressor protein	N/A
PHROG	UHGV-0364544_19	phrog_130	256.8	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0364544_19	UniRef90_UPI000C81B5C4	303.0	0	phage antirepressor	N/A
eggNOG-mapper	UHGV-0364544_19	1345695.CLSA_c09180	289.0	0	Phage antirepressor protein	N/A
Pfam	UHGV-0364544_19	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0364544_19	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0364544_19	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0364544_19	PF03374,PF02498,TIGR02681,COG3617,COG3645	N/A	N/A	N/A	N/A
KOfam	UHGV-0364544_20	K00558	153.3	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0364544_20	phrog_116	199.4	0	DNA methyltransferase	other
UniRef90	UHGV-0364544_20	UniRef90_A0A316NA61	368.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0364544_20	718252.FP2_16350	352.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0364544_20	oMTase_00004	194.2	0	orphan methyltransferase	RM
Pfam	UHGV-0364544_20	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0364544_20	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0364544_20	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0364544_21	phrog_10993	65.8	5.9e-19	Hoc-like head decoration	head and packaging
eggNOG-mapper	UHGV-0364544_21	718252.FP2_16970	59.3	0.000000117	N/A	N/A
Pfam	UHGV-0364544_21	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0364544_21	PF19789	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0364544_22	PF05263,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-0364544_23	K22300	45.3	0.0000000000016	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0364544_23	phrog_8	56.0	9.8e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0364544_23	UniRef90_UPI000C081F44	62.0	0.0000000000265	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0364544_23	1123405.AUMM01000019_gene2881	51.2	0.000000241	sequence-specific DNA binding	N/A
Pfam	UHGV-0364544_23	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0364544_23	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
Pfam	UHGV-0364544_24	PF20037	N/A	N/A	N/A	DUF6440
structural_annotation	UHGV-0364544_24	PF20037	N/A	N/A	N/A	N/A
PHROG	UHGV-0364544_25	phrog_924	50.8	0.000000000000033	N/A	unknown function
UniRef90	UHGV-0364544_25	UniRef90_A0A316RLR0	63.2	0.000000000032	N/A	N/A
eggNOG-mapper	UHGV-0364544_25	1147152.K7PH57_9CAUD	55.8	0.0000000317	N/A	N/A
Pfam	UHGV-0364544_25	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0364544_25	PF04448,NF041588	N/A	N/A	N/A	N/A
UniRef90	UHGV-0364544_26	UniRef90_A0A8D9PDK2	54.3	0.000000296	Zinc-ribbon containing domain	N/A
PHROG	UHGV-0364544_27	phrog_22543	47.8	0.00000000000025	N/A	unknown function
PHROG	UHGV-0364544_30	phrog_2245	71.2	1.6e-20	nucleoside triphosphate pyrophosphohydrolase	other
eggNOG-mapper	UHGV-0364544_30	926561.KB900623_gene754	49.7	0.00000103	N/A	N/A
PHROG	UHGV-0364544_32	phrog_244	85.0	1e-24	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0364544_32	742740.HMPREF9474_03491	124.0	2.27e-35	N/A	N/A
structural_annotation	UHGV-0364544_32	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
KOfam	UHGV-0364544_34	K02314	402.4	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0364544_34	phrog_19	303.2	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0364544_34	UniRef90_A0A1C6FK91	265.0	0	Replicative DNA helicase	N/A
eggNOG-mapper	UHGV-0364544_34	398512.JQKC01000002_gene1875	258.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0364544_34	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0364544_34	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0364544_34	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0364544_34	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0364544_35	phrog_15768	84.0	2.5e-24	N/A	unknown function
UniRef90	UHGV-0364544_35	UniRef90_UPI000F8C6244	102.0	5.87e-23	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0364544_35	1158294.JOMI01000001_gene1618	120.0	4.89e-31	N/A	N/A
structural_annotation	UHGV-0364544_35	PF04492,MF_01177,NF041413,COG5625	N/A	N/A	N/A	N/A
COG	UHGV-0364544_36	COG4443	N/A	N/A	N/A	N/A
KOfam	UHGV-0364544_37	K03111	154.1	1.4013e-45	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0364544_37	phrog_44	133.3	1.6e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0364544_37	UniRef90_A0A316PZZ8	170.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0364544_37	1042163.BRLA_c046430	134.0	1.3e-38	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0364544_37	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0364544_37	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0364544_37	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0364544_37	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0364544_37	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0364544_38	phrog_4433	154.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0364544_38	665950.HMPREF1025_01373	137.0	4.06e-36	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0364544_38	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0364544_38	PF12120,NF000318	N/A	N/A	N/A	N/A
KOfam	UHGV-0364544_39	K07451	44.2	0.0000000000034	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0364544_39	phrog_7370	63.6	2.7e-18	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0364544_39	UniRef90_A0A498CPV0	129.0	4.51e-37	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0364544_39	445972.ANACOL_01826	99.4	6.69e-26	HNH nucleases	N/A
Pfam	UHGV-0364544_39	PF01844	N/A	N/A	HNH endonuclease	HNH
PHROG	UHGV-0364544_40	phrog_1389	70.5	2.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-0364544_40	1280692.AUJL01000025_gene2094	73.9	0.0000000000000015	N/A	N/A
structural_annotation	UHGV-0364544_40	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0364544_41	1041142.ATTP01000043_gene5324	62.8	0.00000000704	N/A	N/A
PHROG	UHGV-0364544_42	phrog_253	132.6	2.2e-39	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0364544_42	UniRef90_UPI00189A2233	133.0	1.07e-36	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0364544_42	903814.ELI_1272	98.6	9.35e-24	Siphovirus Gp157	N/A
Pfam	UHGV-0364544_42	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0364544_42	PF05565,NF002139	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0364544_46	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0364544_47	phrog_757	167.2	0	DNA methyltransferase	other
UniRef90	UHGV-0364544_47	UniRef90_UPI000F0668EB	390.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0364544_47	748224.HMPREF9436_03069	268.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0364544_47	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0364544_47	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0364544_50	K22299	49.8	0.000000000000071	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0364544_50	phrog_3	42.2	0.00000000003	transcriptional repressor	transcription regulation
UniRef90	UHGV-0364544_50	UniRef90_A0A350TVK0	91.7	5.81e-23	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0364544_50	936375.HMPREF1152_1045	77.0	5.04e-18	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0364544_50	retron_type_VI_hth_cluster2_1	41.0	0.000000000059	N/A	Retron
Pfam	UHGV-0364544_50	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0364544_50	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0364544_51	phrog_2967	67.1	3.1e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0364544_51	UniRef90_UPI001C10E005	127.0	1.57e-35	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0364544_51	411469.EUBHAL_01994	117.0	4.38e-32	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0364544_51	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0364544_51	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
UniRef90	UHGV-0364544_52	UniRef90_A0A1Q6L177	59.3	0.0000000156	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0364544_52	1280692.AUJL01000011_gene3216	51.6	0.00000238	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0364544_52	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0364544_52	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0364544_52	PF13560,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0364544_53	K14059	246.3	0	int; integrase	N/A
PHROG	UHGV-0364544_53	phrog_1	213.6	0	integrase	integration and excision
UniRef90	UHGV-0364544_53	UniRef90_UPI001C0F402D	162.0	4.4281e-43	site-specific integrase	N/A
eggNOG-mapper	UHGV-0364544_53	643648.Slip_1975	153.0	1.91e-40	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0364544_53	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0364544_53	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0364544_53	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0364544_53	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0364544_55	658655.HMPREF0988_00916	160.0	0	N/A	N/A
eggNOG-mapper	UHGV-0364544_56	397290.C810_05212	55.8	0.000000939	N/A	N/A
PHROG	UHGV-0364544_57	phrog_374	192.2	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0364544_57	864702.OsccyDRAFT_0687	167.0	0	N/A	N/A
PHROG	UHGV-0364544_59	phrog_21718	43.3	0.0000000000042	N/A	unknown function
PHROG	UHGV-0364544_61	phrog_881	81.5	5.5e-24	holin	lysis
UniRef90	UHGV-0364544_61	UniRef90_A0A4Q7P349	100.0	1.51e-26	Dp-1 family holin	N/A
eggNOG-mapper	UHGV-0364544_61	742740.HMPREF9474_02251	100.0	3.91e-27	Putative phage holin Dp-1	N/A
Pfam	UHGV-0364544_61	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0364544_61	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-0364544_62	phrog_1863	52.0	0.0000000000000073	N/A	unknown function
UniRef90	UHGV-0364544_62	UniRef90_A0A7X2Z1D1	87.4	1.62e-20	t-SNARE coiled-coil homology domain-containing protein	N/A
eggNOG-mapper	UHGV-0364544_62	1122918.KB907250_gene3599	85.9	1.1e-20	N/A	N/A
KOfam	UHGV-0364544_63	K19303	54.0	0.0000000000000034	mepH; murein DD-endopeptidase [EC:3.4.-.-]	N/A
PHROG	UHGV-0364544_63	phrog_329	48.9	0.000000000000021	minor tail protein	tail
UniRef90	UHGV-0364544_63	UniRef90_A0A2V2EEK9	184.0	0	NlpC/P60 domain-containing protein	N/A
eggNOG-mapper	UHGV-0364544_63	755731.Clo1100_1179	92.0	1.75e-19	cysteine-type peptidase activity	N/A
Pfam	UHGV-0364544_63	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0364544_63	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0364544_63	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0364544_63	PF00877,PF01471,NF033743,COG0791	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0364544_64	PF12988	N/A	N/A	N/A	N/A
COG	UHGV-0364544_65	COG3325	N/A	N/A	Chitinase, GH18 family	N/A
structural_annotation	UHGV-0364544_65	PF14600,COG3979	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0364544	Yes	35,564	49	79	1