vOTU vOTU-132402

vOTU: vOTU-132402

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-132402
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-138 → UMGS946 → UMGS946 sp900544965
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-05585 → vOTU-132402
Host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-138 → UMGS946 → UMGS946 sp900544965
Host range breadth	Species
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0261551
Biosample ID	N/A
Genome length (bp)	32,730 bps
CheckV completeness	80.59% (Medium-quality)
CDS count	44
CDS density	93.80%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-138 → UMGS946 → UMGS946 sp900544965	Total connections	23	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-138 → UMGS946 → UMGS946 sp900544965	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 80.59)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0261551_2	UniRef90_R6AVY2	257.0	0	Cell wall-associated hydrolase invasion-associated protein	N/A
eggNOG-mapper	UHGV-0261551_2	755731.Clo1100_1179	61.6	0.0000000242	cysteine-type peptidase activity	N/A
Pfam	UHGV-0261551_2	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0261551_2	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0261551_2	NF033743,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0261551_3	phrog_18593	76.7	3.4e-22	N/A	unknown function
UniRef90	UHGV-0261551_3	UniRef90_UPI00189D24DB	176.0	0	alpha-amylase	N/A
eggNOG-mapper	UHGV-0261551_3	552398.HMPREF0866_03095	135.0	1.95e-38	N/A	N/A
Pfam	UHGV-0261551_3	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0261551_3	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-0261551_6	phrog_9534	123.5	1.4e-36	head protein	head and packaging
eggNOG-mapper	UHGV-0261551_6	665956.HMPREF1032_02939	163.0	7.00649e-44	COG NOG18825 non supervised orthologous group	N/A
Pfam	UHGV-0261551_6	PF03406	N/A	N/A	Phage tail fibre repeat	Phage_fiber_2
PHROG	UHGV-0261551_7	phrog_538	196.6	0	minor tail protein	tail
UniRef90	UHGV-0261551_7	UniRef90_UPI0011064D4D	441.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0261551_7	665956.HMPREF1032_02940	290.0	0	N/A	N/A
Pfam	UHGV-0261551_7	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0261551_7	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0261551_8	phrog_36410	58.1	1.2e-16	N/A	unknown function
UniRef90	UHGV-0261551_8	UniRef90_UPI0011065E28	382.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0261551_8	665956.HMPREF1032_02941	227.0	0	Phage tail protein	N/A
structural_annotation	UHGV-0261551_8	PF16774,PF20753,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0261551_9	phrog_1686	205.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0261551_9	UniRef90_UPI00110609DC	141.0	2.28e-30	tape measure protein	N/A
eggNOG-mapper	UHGV-0261551_9	1347392.CCEZ01000015_gene2830	233.0	0	tape measure	N/A
Pfam	UHGV-0261551_9	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0261551_9	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0261551_9	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0261551_9	PF20155,PF06456,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0261551_10	phrog_2546	93.2	2.8e-27	N/A	unknown function
eggNOG-mapper	UHGV-0261551_10	1160721.RBI_II00529	96.3	1.94e-22	PFAM Tellurite resistance protein TerB	N/A
COG	UHGV-0261551_10	COG3793	N/A	N/A	Tellurite resistance protein TerB	N/A
structural_annotation	UHGV-0261551_10	PF13248	N/A	N/A	N/A	N/A
PHROG	UHGV-0261551_11	phrog_706	132.3	3.1e-39	N/A	unknown function
UniRef90	UHGV-0261551_11	UniRef90_UPI00110712A7	236.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0261551_11	411471.SUBVAR_06986	136.0	1.31e-37	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0261551_11	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0261551_11	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0261551_12	phrog_4450	69.9	3.9e-20	N/A	unknown function
eggNOG-mapper	UHGV-0261551_12	411470.RUMGNA_02225	51.6	0.00000141	N/A	N/A
Pfam	UHGV-0261551_12	PF20378	N/A	N/A	N/A	DUF6673
structural_annotation	UHGV-0261551_12	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0261551_13	phrog_3673	40.5	0.000000000035	Arc-like repressor	transcription regulation
eggNOG-mapper	UHGV-0261551_13	1340434.AXVA01000005_gene4859	48.9	0.000000508	N/A	N/A
PHROG	UHGV-0261551_14	phrog_820	76.0	4.9e-22	major tail protein	tail
UniRef90	UHGV-0261551_14	UniRef90_A0A174M1L1	153.0	1.9478e-43	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0261551_14	411471.SUBVAR_06988	210.0	0	N/A	N/A
structural_annotation	UHGV-0261551_14	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0261551_15	phrog_3266	118.8	2.8e-35	tail completion	connector
eggNOG-mapper	UHGV-0261551_15	665956.HMPREF1032_02946	132.0	2.02e-37	N/A	N/A
structural_annotation	UHGV-0261551_15	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0261551_16	phrog_556	119.8	1.1e-35	minor head protein	head and packaging
UniRef90	UHGV-0261551_16	UniRef90_UPI001D0AB638	162.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0261551_16	663278.Ethha_0097	147.0	1.12104e-43	Minor capsid protein	N/A
structural_annotation	UHGV-0261551_16	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0261551_17	phrog_3366	94.8	3.9e-28	N/A	unknown function
eggNOG-mapper	UHGV-0261551_17	642492.Clole_0823	73.2	0.000000000000006	N/A	N/A
Pfam	UHGV-0261551_17	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0261551_17	PF20536,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0261551_18	phrog_541	108.9	3.1e-32	head-tail adaptor	connector
UniRef90	UHGV-0261551_18	UniRef90_A0A023CQT5	55.5	0.000000194	Protein gp8	N/A
eggNOG-mapper	UHGV-0261551_18	1295642.H839_08319	55.5	0.0000000325	N/A	N/A
PHROG	UHGV-0261551_20	phrog_422	245.6	0	major head protein	head and packaging
UniRef90	UHGV-0261551_20	UniRef90_W0U896	413.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0261551_20	1160721.RBI_II00538	413.0	0	N/A	N/A
structural_annotation	UHGV-0261551_20	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0261551_21	phrog_194	123.8	1.5e-36	head scaffolding protein	head and packaging
UniRef90	UHGV-0261551_21	UniRef90_B0MB52	149.0	3.05063e-42	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0261551_21	411490.ANACAC_00778	149.0	5.11474e-43	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0261551_21	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0261551_21	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0261551_22	phrog_2657	217.3	0	transcriptional regulator	transcription regulation
UniRef90	UHGV-0261551_22	UniRef90_R9KXW9	281.0	0	Rha family phage regulatory protein	N/A
eggNOG-mapper	UHGV-0261551_22	397290.C810_01412	281.0	0	Phage regulatory protein Rha (Phage_pRha)	N/A
Pfam	UHGV-0261551_22	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-0261551_22	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0261551_22	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0261551_22	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0261551_23	1121335.Clst_0388	59.3	0.0000000000395	N/A	N/A
PHROG	UHGV-0261551_24	phrog_581	316.2	0	minor head protein	head and packaging
UniRef90	UHGV-0261551_24	UniRef90_J5UHE6	430.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0261551_24	1292035.H476_1017	341.0	0	N/A	N/A
Pfam	UHGV-0261551_24	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0261551_24	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0261551_24	PF06152,PF21814	N/A	N/A	N/A	N/A
PHROG	UHGV-0261551_25	phrog_533	376.8	0	portal protein	head and packaging
UniRef90	UHGV-0261551_25	UniRef90_UPI001A9A4A58	474.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-0261551_25	411490.ANACAC_00782	439.0	0	N/A	N/A
Pfam	UHGV-0261551_25	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0261551_25	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0261551_26	K06909	126.1	3.6e-37	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0261551_26	phrog_10250	164.8	0	N/A	unknown function
UniRef90	UHGV-0261551_26	UniRef90_A0A3C1A8K4	529.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0261551_26	476272.RUMHYD_01756	414.0	0	N/A	N/A
Pfam	UHGV-0261551_26	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0261551_26	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0261551_26	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0261551_26	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0261551_27	phrog_606	94.4	1.2e-27	terminase small subunit	head and packaging
UniRef90	UHGV-0261551_27	UniRef90_UPI001F487344	192.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0261551_27	397290.C810_05185	172.0	0	DNA-packaging protein gp3	N/A
Pfam	UHGV-0261551_27	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0261551_27	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0261551_28	K06223	135.5	5.19999e-40	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-0261551_28	phrog_56	105.9	5.1e-31	DNA methyltransferase	other
UniRef90	UHGV-0261551_28	UniRef90_A0A2K2FDM6	439.0	0	Site-specific DNA-methyltransferase (adenine-specific)	N/A
eggNOG-mapper	UHGV-0261551_28	697281.Mahau_2547	431.0	0	PFAM D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-0261551_28	MTase_II_00144	223.0	0	Type II methyltransferase	RM
Pfam	UHGV-0261551_28	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
COG	UHGV-0261551_28	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-0261551_28	PF02086,MF_01872,TIGR00571,COG0338	N/A	N/A	N/A	N/A
PHROG	UHGV-0261551_29	phrog_31049	134.6	5.30001e-40	N/A	unknown function
eggNOG-mapper	UHGV-0261551_29	431943.CKL_4074	124.0	1.52e-34	N/A	N/A
structural_annotation	UHGV-0261551_29	TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-0261551_31	K01160	55.0	0.0000000000000023	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0261551_31	phrog_140	94.3	1.4e-27	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0261551_31	UniRef90_A0A412G6G4	200.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0261551_31	394503.Ccel_3302	185.0	0	endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0261551_31	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0261551_31	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0261551_31	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0261551_32	K07505	412.4	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0261551_32	phrog_2597	1167.5	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0261551_32	UniRef90_UPI000B49FB33	1074.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0261551_32	394503.Ccel_3304	1049.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0261551_32	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0261551_32	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0261551_32	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0261551_32	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-0261551_33	K17677	341.5	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0261551_33	phrog_16	274.0	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0261551_33	UniRef90_A0A1Y4RLE0	826.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0261551_33	742723.HMPREF9477_00926	815.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0261551_33	mREase_IV_00005	118.0	9.3e-35	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0261551_33	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0261551_33	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0261551_33	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0261551_33	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0261551_34	phrog_2698	186.0	0	N/A	unknown function
UniRef90	UHGV-0261551_34	UniRef90_UPI0019D07D73	199.0	0	N/A	N/A
eggNOG-mapper	UHGV-0261551_34	394503.Ccel_3308	197.0	0	N/A	N/A
structural_annotation	UHGV-0261551_34	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0261551_35	phrog_124	222.7	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0261551_35	UniRef90_UPI0011068BCC	436.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0261551_35	645991.Sgly_0321	435.0	0	AAA domain	N/A
Pfam	UHGV-0261551_35	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0261551_35	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-0261551_36	K03546	67.0	2.4e-19	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0261551_36	phrog_1499	458.2	0	N/A	unknown function
UniRef90	UHGV-0261551_36	UniRef90_A0A6A7K971	568.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0261551_36	645991.Sgly_0320	544.0	0	domain protein	N/A
PADLOC	UHGV-0261551_36	AAA_15	46.7	0.00000000000078	N/A	N/A
Pfam	UHGV-0261551_36	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0261551_36	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0261551_36	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
KOfam	UHGV-0261551_42	K18830	54.5	0.0000000000000027	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0261551_42	phrog_8	48.7	0.00000000000016	transcriptional regulator	transcription regulation
UniRef90	UHGV-0261551_42	UniRef90_A0A1H8E2B5	161.0	0	Transcriptional regulator, contains XRE-family HTH domain	N/A
eggNOG-mapper	UHGV-0261551_42	1235799.C818_02407	62.0	0.000000000075	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0261551_42	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0261551_42	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0261551_42	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0261551_44	K06400	126.4	3.3e-37	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0261551_44	phrog_95	113.5	2.1e-33	integrase	integration and excision
UniRef90	UHGV-0261551_44	UniRef90_A0A355RPH2	147.0	2.87266e-43	Recombinase family protein (Fragment)	N/A
eggNOG-mapper	UHGV-0261551_44	1235835.C814_00825	157.0	4.2039e-44	Resolvase, N terminal domain	N/A
Pfam	UHGV-0261551_44	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0261551_44	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0261551_44	PF00239,NF033518,COG1961	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0261551	Yes	32,730	51	81	1