vOTU vOTU-132411

vOTU: vOTU-132411

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-132411
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium paraputrificum
Taxonomy (UHGV)	vFAM-00022 → vSUBFAM-02353 → vOTU-132411
Host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium paraputrificum
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1495362
Biosample ID	SAMEA4545297
Genome length (bp)	25,580 bps
CheckV completeness	62.38% (Medium-quality)
CDS count	40
CDS density	93.46%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage		Total connections		Host agreement
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium paraputrificum	Total connections	5	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 62.38)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1495362_1	1280689.AUJC01000003_gene937	90.1	4.54e-21	N/A	N/A
KOfam	UHGV-1495362_2	K02086	46.7	0.00000000000029	dnaD; DNA replication protein	N/A
PHROG	UHGV-1495362_2	phrog_2562	240.8	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1495362_2	UniRef90_UPI0018A8E978	476.0	0	N/A	N/A
eggNOG-mapper	UHGV-1495362_2	1280689.AUJC01000003_gene938	538.0	0	N/A	N/A
Pfam	UHGV-1495362_2	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
Pfam	UHGV-1495362_2	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-1495362_2	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-1495362_2	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1495362_2	PF14297,TIGR01446,TIGR01714	N/A	N/A	N/A	N/A
PHROG	UHGV-1495362_3	phrog_3497	60.6	7e-19	N/A	unknown function
UniRef90	UHGV-1495362_3	UniRef90_A0A174EZL9	166.0	0	N/A	N/A
eggNOG-mapper	UHGV-1495362_3	1280689.AUJC01000003_gene939	169.0	0	N/A	N/A
structural_annotation	UHGV-1495362_3	COG5126	N/A	N/A	N/A	N/A
PHROG	UHGV-1495362_6	phrog_1389	110.9	7.1e-33	N/A	unknown function
eggNOG-mapper	UHGV-1495362_6	1280692.AUJL01000025_gene2094	159.0	0	N/A	N/A
structural_annotation	UHGV-1495362_6	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
PHROG	UHGV-1495362_8	phrog_1770	68.2	1.4e-19	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1495362_8	536233.CLO_1822	235.0	0	N/A	N/A
structural_annotation	UHGV-1495362_8	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
KOfam	UHGV-1495362_10	K03111	128.1	1.1e-37	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1495362_10	phrog_44	137.9	6.50006e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1495362_10	UniRef90_UPI0006C672FD	253.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1495362_10	1280689.AUJC01000003_gene949	224.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1495362_10	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1495362_10	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1495362_10	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1495362_10	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1495362_10	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1495362_12	phrog_5164	63.8	2.1e-18	N/A	unknown function
eggNOG-mapper	UHGV-1495362_12	1196322.A370_02842	51.6	0.00000213	N/A	N/A
structural_annotation	UHGV-1495362_12	PF01503,MF_01020,TIGR03188,COG0140	N/A	N/A	N/A	N/A
UniRef90	UHGV-1495362_16	UniRef90_Q97HT7	90.5	8.15e-23	Zn-finger containing protein	N/A
PHROG	UHGV-1495362_17	phrog_38492	54.0	0.000000000000003	N/A	unknown function
UniRef90	UHGV-1495362_17	UniRef90_UPI000C076F29	90.9	5.25e-21	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1495362_17	536233.CLO_0875	57.4	0.00000000211	Helix-turn-helix	N/A
Pfam	UHGV-1495362_17	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
structural_annotation	UHGV-1495362_17	PF04545,MF_00674,NF009180,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-1495362_18	phrog_9628	159.2	0	N/A	unknown function
UniRef90	UHGV-1495362_18	UniRef90_UPI0018986DDA	215.0	0	DNA-binding response regulator	N/A
eggNOG-mapper	UHGV-1495362_18	1121342.AUCO01000012_gene1709	127.0	1.12e-36	N/A	N/A
Pfam	UHGV-1495362_18	PF06056	N/A	N/A	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
structural_annotation	UHGV-1495362_18	PF06056,COG2771	N/A	N/A	N/A	N/A
KOfam	UHGV-1495362_19	K07451	46.1	0.00000000000091	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-1495362_19	phrog_119	81.4	1.2e-23	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1495362_19	UniRef90_UPI0017857CC8	150.0	2.8026e-45	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1495362_19	1280689.AUJC01000011_gene1516	115.0	4.03e-32	endonuclease activity	N/A
Pfam	UHGV-1495362_19	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1495362_19	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1495362_21	phrog_1066	139.5	9.99967e-42	N/A	unknown function
eggNOG-mapper	UHGV-1495362_21	1382358.JHVN01000024_gene1703	131.0	7e-38	N/A	N/A
structural_annotation	UHGV-1495362_21	PF05119,TIGR01558	N/A	N/A	N/A	N/A
PHROG	UHGV-1495362_22	phrog_9	373.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-1495362_22	UniRef90_UPI0017835915	1053.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-1495362_22	318464.IO99_13765	813.0	0	Terminase	N/A
Pfam	UHGV-1495362_22	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1495362_22	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1495362_22	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1495362_22	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1495362_23	phrog_12	191.9	0	portal protein	head and packaging
UniRef90	UHGV-1495362_23	UniRef90_A0A084J9C3	694.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1495362_23	318464.IO99_13760	694.0	0	Portal protein	N/A
Pfam	UHGV-1495362_23	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1495362_23	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1495362_23	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1495362_24	K01358	141.0	1.19993e-41	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1495362_24	phrog_94	218.6	0	head maturation protease	head and packaging
UniRef90	UHGV-1495362_24	UniRef90_UPI00054CD768	476.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-1495362_24	1280689.AUJC01000011_gene1520	479.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1495362_24	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1495362_24	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1495362_24	PF00574,MF_00444,NF011091,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1495362_25	phrog_10	193.4	0	major head protein	head and packaging
UniRef90	UHGV-1495362_25	UniRef90_UPI00041EF31C	760.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1495362_25	1280689.AUJC01000011_gene1521	760.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-1495362_25	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1495362_25	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1495362_25	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1495362_25	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1495362_26	phrog_5223	123.4	5.6e-37	neck protein	connector
UniRef90	UHGV-1495362_26	UniRef90_UPI0003FE9443	169.0	0	head-tail connector protein	N/A
eggNOG-mapper	UHGV-1495362_26	1280689.AUJC01000011_gene1523	169.0	0	N/A	N/A
NCBIFam	UHGV-1495362_26	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-1495362_26	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1495362_27	phrog_1951	128.2	2.2e-38	head-tail adaptor	connector
UniRef90	UHGV-1495362_27	UniRef90_UPI000C08A0AB	199.0	0	phage head closure protein	N/A
eggNOG-mapper	UHGV-1495362_27	365048.Q0H236_9CAUD	112.0	4.77e-31	N/A	N/A
NCBIFam	UHGV-1495362_27	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-1495362_27	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1495362_28	phrog_5	52.5	0.000000000000013	tail completion or Neck1 protein	connector
UniRef90	UHGV-1495362_28	UniRef90_UPI0013CFF7CD	146.0	2.97075e-43	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1495362_28	698758.AXY_02170	109.0	2.53e-29	N/A	N/A
structural_annotation	UHGV-1495362_28	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1495362_29	phrog_78	65.5	9.7e-19	tail terminator	connector
eggNOG-mapper	UHGV-1495362_29	1243664.CAVL020000054_gene3018	130.0	4.25e-38	N/A	N/A
structural_annotation	UHGV-1495362_29	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-1495362_30	phrog_88	169.8	0	major tail protein	tail
UniRef90	UHGV-1495362_30	UniRef90_UPI000C071D5C	565.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1495362_30	1497679.EP56_05760	249.0	0	phage tail protein	N/A
Pfam	UHGV-1495362_30	PF13205	N/A	N/A	Bacterial Ig-like domain	Big_5
NCBIFam	UHGV-1495362_30	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1495362_30	PF04630,PF13205,TIGR01603,NF033814,COG2372,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1495362_31	phrog_709	154.0	0	N/A	unknown function
eggNOG-mapper	UHGV-1495362_31	365048.Q0H232_9CAUD	153.0	0	N/A	N/A
structural_annotation	UHGV-1495362_31	PF19591	N/A	N/A	N/A	N/A
PHROG	UHGV-1495362_32	phrog_3033	80.3	1.6e-23	N/A	unknown function
UniRef90	UHGV-1495362_32	UniRef90_B7HV46	63.5	0.0000000000029	Conserved domain protein	N/A
eggNOG-mapper	UHGV-1495362_32	1220589.CD32_00840	67.0	0.000000000000026	N/A	N/A
PHROG	UHGV-1495362_33	phrog_1272	385.3	0	tail length tape measure protein	tail
UniRef90	UHGV-1495362_33	UniRef90_UPI000DCFD8A9	1256.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1495362_33	1341151.ASZU01000004_gene253	604.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-1495362_33	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-1495362_33	COG4487	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1495362_33	PF20155,TIGR02675,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1495362_34	phrog_33	87.1	3.6e-25	distal tail protein Dit	tail
UniRef90	UHGV-1495362_34	UniRef90_UPI000DD01D50	479.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-1495362_34	1280689.AUJC01000011_gene1531	293.0	0	phage tail	N/A
Pfam	UHGV-1495362_34	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-1495362_34	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-1495362_34	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1495362_34	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1495362_35	phrog_1067	340.7	0	minor head protein	head and packaging
UniRef90	UHGV-1495362_35	UniRef90_UPI00189EF9F9	1116.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1495362_35	1280689.AUJC01000011_gene1532	716.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-1495362_35	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1495362_35	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1495362_35	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1495362_35	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1495362_37	phrog_24267	133.9	1.5e-39	N/A	unknown function
UniRef90	UHGV-1495362_37	UniRef90_UPI000C07ED94	608.0	0	N/A	N/A
eggNOG-mapper	UHGV-1495362_37	764299.STRIC_1424	132.0	4.44e-34	tail collar domain protein	N/A
COG	UHGV-1495362_37	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-1495362_37	PF10651,MF_04106,NF007636	N/A	N/A	N/A	N/A
KOfam	UHGV-1495362_38	K21478	72.2	8.4e-21	icaB; poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase [EC:3.5.1.-]	N/A
Pfam	UHGV-1495362_38	PF01522	N/A	N/A	Polysaccharide deacetylase	Polysacc_deac_1
COG	UHGV-1495362_38	COG0726	N/A	N/A	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	N/A
PHROG	UHGV-1495362_39	phrog_199	105.0	7.1e-31	holin	lysis
UniRef90	UHGV-1495362_39	UniRef90_A0A1C6KXX7	227.0	0	Phage-related holin (Lysis protein)	N/A
eggNOG-mapper	UHGV-1495362_39	1280689.AUJC01000003_gene982	253.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-1495362_39	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1495362_39	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1495362_39	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1495362_39	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-1495362_40	K01447	101.4	1.2e-29	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1495362_40	phrog_3088	164.6	0	amidase	lysis
UniRef90	UHGV-1495362_40	UniRef90_UPI0018A0546F	598.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1495362_40	1280689.AUJC01000003_gene983	512.0	0	n-acetylmuramoyl-l-alanine amidase	N/A
Pfam	UHGV-1495362_40	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1495362_40	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1495362_40	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-1495362_40	PF01510,PF01471,MF_04111,NF008758,TIGR02869,COG5632,COG3409	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1495362	Yes	25,580	31	62	1