vOTU vOTU-133282

vOTU: vOTU-133282

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-133282
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00027 → vSUBFAM-00268 → vGENUS-02484 → vOTU-133282
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Dysosmobacter → Dysosmobacter sp001916835
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0025188
Biosample ID	SAMEA4766191
Genome length (bp)	22,294 bps
CheckV completeness	50.18% (Medium-quality)
CDS count	35
CDS density	95.35%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Dysosmobacter → Dysosmobacter sp001916835	Total connections	5	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 50.18)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0025188_2	phrog_817	127.5	6.8e-38	tail fiber protein	tail
UniRef90	UHGV-0025188_2	UniRef90_UPI0018EE58A4	153.0	1.99965e-42	fibronectin type III domain-containing protein	N/A
eggNOG-mapper	UHGV-0025188_2	1211817.CCAT010000003_gene222	135.0	1.61e-37	N/A	N/A
Pfam	UHGV-0025188_2	PF21821	N/A	N/A	Dit-like phage tail protein	Dit_like
structural_annotation	UHGV-0025188_2	PF21821,TIGR01633,COG3499	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0025188_3	1123288.SOV_2c10760	75.1	5.89e-16	N/A	N/A
KOfam	UHGV-0025188_4	K19304	125.3	6.1e-37	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0025188_4	phrog_20677	256.3	0	N/A	unknown function
UniRef90	UHGV-0025188_4	UniRef90_A0A4Z0QZJ2	280.0	0	LYZ2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0025188_4	1123288.SOV_2c10770	247.0	0	N/A	N/A
Pfam	UHGV-0025188_4	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
structural_annotation	UHGV-0025188_4	PF01551,PF05113,MF_00664,NF033848,NF040883,COG0739,COG3500	N/A	N/A	N/A	N/A
UniRef90	UHGV-0025188_6	UniRef90_G9XHG7	145.0	6.97006e-41	Gp138_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0025188_6	1123288.SOV_2c10780	140.0	2.01e-39	Baseplate assembly protein	N/A
Pfam	UHGV-0025188_6	PF18352	N/A	N/A	N/A	Gp138_N
COG	UHGV-0025188_6	COG4540	N/A	N/A	Phage P2 baseplate assembly protein gpV	N/A
structural_annotation	UHGV-0025188_6	PF18352,TIGR01644,COG4540	N/A	N/A	N/A	N/A
PHROG	UHGV-0025188_7	phrog_120	71.8	9.5e-21	baseplate protein	tail
UniRef90	UHGV-0025188_7	UniRef90_UPI00045D3201	65.1	0.0000000000356	bacteriophage protein	N/A
eggNOG-mapper	UHGV-0025188_7	1196322.A370_02017	71.6	0.0000000000000181	N/A	N/A
structural_annotation	UHGV-0025188_7	TIGR03357,COG3628	N/A	N/A	N/A	N/A
PHROG	UHGV-0025188_8	phrog_6	210.3	0	baseplate protein	tail
UniRef90	UHGV-0025188_8	UniRef90_UPI00068F177B	342.0	0	baseplate J/gp47 family protein	N/A
eggNOG-mapper	UHGV-0025188_8	1123288.SOV_2c10800	334.0	0	Baseplate J-like protein	N/A
Pfam	UHGV-0025188_8	PF04865	N/A	N/A	Baseplate J-like protein	Baseplate_J
COG	UHGV-0025188_8	COG3299	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0025188_8	PF04865,PF21379,MF_04102,TIGR02243,COG3299	N/A	N/A	N/A	N/A
PHROG	UHGV-0025188_9	phrog_587	120.3	1.7e-36	structural protein	head and packaging
UniRef90	UHGV-0025188_9	UniRef90_UPI000F56EA6C	101.0	5.28e-23	N/A	N/A
eggNOG-mapper	UHGV-0025188_9	626418.bglu_1g15800	97.8	1.87e-22	N/A	N/A
Pfam	UHGV-0025188_9	PF11041	N/A	N/A	N/A	DUF2612
structural_annotation	UHGV-0025188_9	PF11041,TIGR02242,COG3948	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0025188_12	1123288.SOV_2c10820	68.9	0.000000000234	Phage Tail Collar Domain	N/A
COG	UHGV-0025188_12	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-0025188_17	phrog_1129	60.8	1.7e-17	holin	lysis
UniRef90	UHGV-0025188_17	UniRef90_R6H6W8	124.0	2.8e-35	Putative holin	N/A
eggNOG-mapper	UHGV-0025188_17	1226322.HMPREF1545_00069	107.0	2.67e-29	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0025188_17	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0025188_17	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-0025188_19	K08640	83.3	4.3e-24	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-0025188_19	phrog_894	79.0	5.3e-23	endolysin	lysis
UniRef90	UHGV-0025188_19	UniRef90_A0A1Q6RI37	210.0	0	NAGPA domain-containing protein	N/A
eggNOG-mapper	UHGV-0025188_19	1235797.C816_04171	159.0	2.42425e-43	Peptidase M15	N/A
Pfam	UHGV-0025188_19	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
Pfam	UHGV-0025188_19	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-0025188_19	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0025188_19	PF09992,PF08291,COG4632,COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0025188_21	PF17516,MF_01077,TIGR00739,COG1862	N/A	N/A	N/A	N/A
KOfam	UHGV-0025188_24	K02316	130.7	1.2e-38	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0025188_24	phrog_47	122.8	3.2e-36	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025188_24	UniRef90_A0A843GN62	229.0	0	Toprim domain-containing protein	N/A
eggNOG-mapper	UHGV-0025188_24	525904.Tter_1835	77.0	0.00000000000135	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	N/A
Pfam	UHGV-0025188_24	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
Pfam	UHGV-0025188_24	PF13155	N/A	N/A	Toprim-like	Toprim_2
COG	UHGV-0025188_24	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0025188_24	PF01807,PF13155,MF_00974,TIGR01391,COG0358	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0025188_25	PF08804	N/A	N/A	N/A	N/A
Pfam	UHGV-0025188_26	PF08761	N/A	N/A	dUTPase	dUTPase_2
structural_annotation	UHGV-0025188_26	PF12643,MF_01020,NF001610,COG0140	N/A	N/A	N/A	N/A
PHROG	UHGV-0025188_27	phrog_620	152.9	1.4013e-45	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025188_27	UniRef90_A0A1V5QG81	160.0	1.78007e-41	Site-specific DNA-methyltransferase (cytosine-N(4)-specific)	N/A
eggNOG-mapper	UHGV-0025188_27	469616.FMAG_01769	155.0	1.74041e-42	ParB-like nuclease domain	N/A
PADLOC	UHGV-0025188_27	MTase_II_00015	92.2	8.2e-27	Type II methyltransferase	RM
Pfam	UHGV-0025188_27	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0025188_27	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0025188_27	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0025188_27	PF02195,PF05891,MF_02015,MF_01589,NF033398,TIGR04285,COG1041,COG5119	N/A	N/A	N/A	N/A
KOfam	UHGV-0025188_29	K02337	743.8	0	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	N/A
PHROG	UHGV-0025188_29	phrog_405	722.0	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025188_29	UniRef90_A0A843GPT9	822.0	0	DNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-0025188_29	224324.aq_1008	416.0	0	TIGRFAM DNA polymerase III, alpha subunit	N/A
Pfam	UHGV-0025188_29	PF02811	N/A	N/A	PHP domain	PHP
Pfam	UHGV-0025188_29	PF07733	N/A	N/A	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
Pfam	UHGV-0025188_29	PF17657	N/A	N/A	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
Pfam	UHGV-0025188_29	PF14579	N/A	N/A	Helix-hairpin-helix motif	HHH_6
NCBIFam	UHGV-0025188_29	TIGR00594.1	N/A	N/A	DNA polymerase III subunit alpha	N/A
COG	UHGV-0025188_29	COG0587	N/A	N/A	DNA polymerase III, alpha subunit	N/A
structural_annotation	UHGV-0025188_29	PF07733,PF02811,PF17657,PF14579,MF_01902,TIGR00594,COG0587	N/A	N/A	N/A	N/A
KOfam	UHGV-0025188_30	K03553	207.2	0	recA; recombination protein RecA	N/A
PHROG	UHGV-0025188_30	phrog_97	174.3	0	UvsX-like recombinase	other
UniRef90	UHGV-0025188_30	UniRef90_A0A1F8GCE0	179.0	0	Protein RecA	N/A
eggNOG-mapper	UHGV-0025188_30	1329250.WOSG25_030820	179.0	0	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	N/A
Pfam	UHGV-0025188_30	PF00154	N/A	N/A	recA bacterial DNA recombination protein	RecA
COG	UHGV-0025188_30	COG0468	N/A	N/A	RecA/RadA recombinase	N/A
structural_annotation	UHGV-0025188_30	PF00154,MF_00268,TIGR02012,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0025188_32	phrog_1706	63.6	3.2e-18	CRISPR/Cas system associated	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-0025188_32	PF01930,MF_03030,TIGR00372,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0025188_33	phrog_559	44.8	0.00000000000035	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025188_33	UniRef90_A0A0F9BII5	55.5	0.00000117	N/A	N/A
eggNOG-mapper	UHGV-0025188_33	1110702.G8GIR9_9CAUD	56.2	0.00000077	regulation of transcription, DNA-dependent	N/A
Pfam	UHGV-0025188_33	PF07460	N/A	N/A	NUMOD3 motif	NUMOD3
Pfam	UHGV-0025188_33	PF04480	N/A	N/A	N/A	DUF559
structural_annotation	UHGV-0025188_33	PF04480,NF007294,COG3727	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0025188_34	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0025188	Yes	22,294	35	50	1