vOTU vOTU-133389

vOTU: vOTU-133389

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-133389
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00022 → vOTU-133389
Host lineage	Bacteria → Proteobacteria
Host range breadth	Phylum
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0041000
Biosample ID	N/A
Genome length (bp)	32,382 bps
CheckV completeness	87.20% (Medium-quality)
CDS count	53
CDS density	93.13%
tRNA count	1
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Proteobacteria	Total connections	4	Host agreement	50
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Bulleidia → Bulleidia moorei	Total connections	3	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 87.2)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0041000_1	K08372	338.7	0	pepD; putative serine protease PepD [EC:3.4.21.-]	N/A
PHROG	UHGV-0041000_1	phrog_11383	328.6	0	N/A	unknown function
UniRef90	UHGV-0041000_1	UniRef90_E7MPB5	840.0	0	Trypsin	N/A
eggNOG-mapper	UHGV-0041000_1	706433.HMPREF9430_01395	840.0	0	typically periplasmic, contain C-terminal PDZ domain	N/A
PADLOC	UHGV-0041000_1	retron_XI	58.6	1.4e-16	single gene	Retron
Pfam	UHGV-0041000_1	PF13365	N/A	N/A	Trypsin-like peptidase domain	Trypsin_2
Pfam	UHGV-0041000_1	PF13180	N/A	N/A	PDZ domain	PDZ_2
COG	UHGV-0041000_1	COG0265	N/A	N/A	Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain	N/A
PHROG	UHGV-0041000_2	phrog_443	60.7	4.3e-17	holin	lysis
UniRef90	UHGV-0041000_2	UniRef90_UPI0004232E58	137.0	4.85003e-41	holin	N/A
eggNOG-mapper	UHGV-0041000_2	1123263.AUKY01000046_gene485	137.0	8.14014e-42	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0041000_2	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0041000_2	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0041000_4	phrog_7698	80.5	6e-36	endolysin	lysis
UniRef90	UHGV-0041000_4	UniRef90_A0A412PAK3	486.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0041000_4	1235792.C808_00103	231.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0041000_4	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0041000_4	PF08230	N/A	N/A	CW_7 repeat	CW_7
COG	UHGV-0041000_4	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0041000_4	PF01520,PF08230,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
Pfam	UHGV-0041000_5	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
eggNOG-mapper	UHGV-0041000_6	1123263.AUKY01000046_gene480	58.9	0.000000888	N/A	N/A
structural_annotation	UHGV-0041000_6	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
PHROG	UHGV-0041000_7	phrog_1067	329.4	0	minor head protein	head and packaging
UniRef90	UHGV-0041000_7	UniRef90_A0A412PAL3	1202.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0041000_7	1123263.AUKY01000068_gene489	1187.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0041000_7	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0041000_7	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0041000_7	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0041000_7	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-0041000_8	UniRef90_A0A1C5W6B6	154.0	5.395e-43	Phage-related protein	N/A
eggNOG-mapper	UHGV-0041000_8	1123263.AUKY01000068_gene490	470.0	0	tail component	N/A
COG	UHGV-0041000_8	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0041000_8	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0041000_9	phrog_6900	239.6	0	tail length tape measure protein	tail
UniRef90	UHGV-0041000_9	UniRef90_A0A412PAQ2	840.0	0	PblA	N/A
eggNOG-mapper	UHGV-0041000_9	1123263.AUKY01000068_gene491	828.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0041000_9	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0041000_10	phrog_1633	132.7	1.5e-39	N/A	unknown function
UniRef90	UHGV-0041000_10	UniRef90_UPI00194E499C	108.0	6.33e-28	N/A	N/A
eggNOG-mapper	UHGV-0041000_10	1123263.AUKY01000068_gene492	235.0	0	N/A	N/A
Pfam	UHGV-0041000_10	PF17318	N/A	N/A	N/A	DUF5361
structural_annotation	UHGV-0041000_10	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-0041000_11	phrog_1526	75.6	5.2e-22	N/A	unknown function
eggNOG-mapper	UHGV-0041000_11	1121864.OMO_02159	58.5	0.000000000589	N/A	N/A
PHROG	UHGV-0041000_12	phrog_117	180.1	0	major tail protein	tail
UniRef90	UHGV-0041000_12	UniRef90_A0A412PAM7	354.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0041000_12	1123263.AUKY01000068_gene494	347.0	0	N/A	N/A
structural_annotation	UHGV-0041000_12	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0041000_13	phrog_123	47.3	0.0000000000004	tail terminator	connector
eggNOG-mapper	UHGV-0041000_13	1123263.AUKY01000068_gene495	213.0	0	N/A	N/A
structural_annotation	UHGV-0041000_13	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-0041000_14	phrog_387	46.4	0.00000000000035	neck protein	connector
eggNOG-mapper	UHGV-0041000_14	1121864.OMO_02156	50.4	0.00000033	N/A	N/A
PHROG	UHGV-0041000_15	phrog_501	93.0	2.6e-27	head closure Hc1	connector
UniRef90	UHGV-0041000_15	UniRef90_A0A139QHM6	154.0	0	Phage-associated protein	N/A
eggNOG-mapper	UHGV-0041000_15	1123263.AUKY01000068_gene497	219.0	0	N/A	N/A
structural_annotation	UHGV-0041000_15	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0041000_16	phrog_137	62.2	7.5e-18	head-tail adaptor Ad1	connector
UniRef90	UHGV-0041000_16	UniRef90_UPI000985C8EC	149.0	3.64338e-44	Gp19/Gp15/Gp42 family protein	N/A
eggNOG-mapper	UHGV-0041000_16	1437609.BCAL_1711	53.5	0.000000234	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-0041000_16	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-0041000_16	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-0041000_18	phrog_10	143.5	1.80067e-42	major head protein	head and packaging
UniRef90	UHGV-0041000_18	UniRef90_A0A412PAM4	549.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0041000_18	1123263.AUKY01000068_gene500	535.0	0	Phage capsid family	N/A
Pfam	UHGV-0041000_18	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0041000_18	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0041000_18	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0041000_18	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0041000_19	phrog_233	63.3	6.8e-18	head scaffolding protein	head and packaging
UniRef90	UHGV-0041000_19	UniRef90_UPI001C03A2F1	110.0	7.37e-28	N/A	N/A
eggNOG-mapper	UHGV-0041000_19	1123263.AUKY01000068_gene501	300.0	0	N/A	N/A
structural_annotation	UHGV-0041000_19	PF14265	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0041000_20	PF07073,MF_00436,NF008636,COG4568	N/A	N/A	N/A	N/A
PHROG	UHGV-0041000_21	phrog_193	88.0	1.6e-25	head maturation protease	head and packaging
UniRef90	UHGV-0041000_21	UniRef90_A0A412PAS1	744.0	0	Ntox50 domain-containing protein	N/A
eggNOG-mapper	UHGV-0041000_21	748224.HMPREF9436_01469	254.0	0	N/A	N/A
Pfam	UHGV-0041000_21	PF15542	N/A	N/A	Bacterial toxin 50	Ntox50
COG	UHGV-0041000_21	COG5529	N/A	N/A	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	N/A
PHROG	UHGV-0041000_22	phrog_104	219.4	0	portal protein	head and packaging
UniRef90	UHGV-0041000_22	UniRef90_A0A412PAJ2	930.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0041000_22	1123263.AUKY01000112_gene2059	922.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0041000_22	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0041000_22	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0041000_23	phrog_9	159.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0041000_23	UniRef90_UPI001D0087E2	690.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0041000_23	1123263.AUKY01000112_gene2060	947.0	0	phage terminase, large subunit	N/A
Pfam	UHGV-0041000_23	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0041000_23	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0041000_23	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
UniRef90	UHGV-0041000_24	UniRef90_R6GFM0	62.8	0.0000000000222	Conserved domain protein	N/A
PHROG	UHGV-0041000_25	phrog_338	54.4	0.0000000000000028	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0041000_25	UniRef90_UPI0015F33F36	174.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0041000_25	1123263.AUKY01000112_gene2062	248.0	0	N/A	N/A
PHROG	UHGV-0041000_26	phrog_36	57.8	2.5e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0041000_26	UniRef90_A0A7X7SYD5	53.5	0.00000238	RNA polymerase subunit sigma-24	N/A
eggNOG-mapper	UHGV-0041000_26	1304880.JAGB01000002_gene2225	51.6	0.00000261	N/A	N/A
structural_annotation	UHGV-0041000_26	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0041000_27	PF09403,NF001644	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0041000_29	PF16362	N/A	N/A	N/A	N/A
PHROG	UHGV-0041000_30	phrog_1305	135.0	3.8e-40	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0041000_30	UniRef90_A0A412PAN5	468.0	0	N/A	N/A
eggNOG-mapper	UHGV-0041000_30	1235802.C823_04729	210.0	0	N/A	N/A
Pfam	UHGV-0041000_30	PF13643	N/A	N/A	N/A	DUF4145
structural_annotation	UHGV-0041000_30	PF13643	N/A	N/A	N/A	N/A
PHROG	UHGV-0041000_31	phrog_14088	58.6	6.2e-17	N/A	unknown function
UniRef90	UHGV-0041000_31	UniRef90_UPI00117BDD8B	69.3	0.0000000000000436	carboxypeptidase	N/A
KOfam	UHGV-0041000_32	K04763	94.2	2e-27	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0041000_32	phrog_216	114.1	9.4e-34	integrase	integration and excision
UniRef90	UHGV-0041000_32	UniRef90_A0A412PAR7	503.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0041000_32	706433.HMPREF9430_01277	255.0	0	DNA integration	N/A
Pfam	UHGV-0041000_32	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0041000_32	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0041000_32	PF00589,MF_02055,NF040815,COG4973	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0041000_33	PF08962,COG2388	N/A	N/A	N/A	N/A
PHROG	UHGV-0041000_34	phrog_20437	106.5	2e-31	DNA replication initiation	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0041000_34	UniRef90_A0A412PAT0	540.0	0	N/A	N/A
eggNOG-mapper	UHGV-0041000_34	445971.ANASTE_00700	115.0	6.25e-28	N/A	N/A
Pfam	UHGV-0041000_34	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0041000_34	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
UniRef90	UHGV-0041000_35	UniRef90_A0A1T4LZF6	152.0	6.92241e-43	E2 family protein D	N/A
Pfam	UHGV-0041000_35	PF14460	N/A	N/A	Prokaryotic E2 family D	Prok-E2_D
structural_annotation	UHGV-0041000_35	PF14460,TIGR03737	N/A	N/A	N/A	N/A
KOfam	UHGV-0041000_37	K21029	81.4	1.1e-23	moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]	N/A
UniRef90	UHGV-0041000_37	UniRef90_A0A412PB99	440.0	0	ThiF domain-containing protein	N/A
eggNOG-mapper	UHGV-0041000_37	428127.EUBDOL_01242	237.0	0	ThiF family	N/A
PADLOC	UHGV-0041000_37	E1E2_00015	43.4	0.0000000000042	E1-E2	CBASS
Pfam	UHGV-0041000_37	PF00899	N/A	N/A	ThiF family	ThiF
COG	UHGV-0041000_37	COG0476	N/A	N/A	Molybdopterin or thiamine biosynthesis adenylyltransferase	N/A
structural_annotation	UHGV-0041000_37	PF00899,MF_03049,TIGR03736,COG0476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0041000_39	PF02768,PF02767,MF_00317,TIGR00663,COG0592	N/A	N/A	N/A	N/A
UniRef90	UHGV-0041000_43	UniRef90_A0A412PAP5	160.0	0	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0041000_43	679192.HMPREF9013_1321	49.3	0.00000131	N/A	N/A
Pfam	UHGV-0041000_43	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
PHROG	UHGV-0041000_44	phrog_5079	66.4	3.5e-19	N/A	unknown function
eggNOG-mapper	UHGV-0041000_44	1095737.HMPREF1110_1194	49.7	0.0000000846	N/A	N/A
PHROG	UHGV-0041000_45	phrog_1233	47.8	0.00000000000025	N/A	unknown function
UniRef90	UHGV-0041000_45	UniRef90_A0A178TV05	58.5	0.0000000038	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-0041000_45	1295642.H839_08269	61.2	0.0000000000618	N/A	N/A
structural_annotation	UHGV-0041000_45	PF13058	N/A	N/A	N/A	N/A
UniRef90	UHGV-0041000_49	UniRef90_A0A412PAU2	136.0	1.12999e-40	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0041000_49	1232446.BAIE02000002_gene796	56.2	0.00000000122	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0041000_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0041000_49	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0041000_50	K01356	82.5	7.8e-24	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0041000_50	phrog_4	140.5	1.29998e-41	transcriptional repressor	transcription regulation
UniRef90	UHGV-0041000_50	UniRef90_A0A412PAL4	480.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0041000_50	1123263.AUKY01000107_gene746	313.0	0	Peptidase S24-like	N/A
PADLOC	UHGV-0041000_50	retron_type_VI_hth_cluster2_1	41.6	0.000000000027	N/A	Retron
Pfam	UHGV-0041000_50	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0041000_50	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0041000_50	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-0041000_50	PF00717,PF01381,MF_00015,NF041951,NF007621,COG2932	N/A	N/A	N/A	N/A
KOfam	UHGV-0041000_52	K14059	144.6	1.3004e-42	int; integrase	N/A
PHROG	UHGV-0041000_52	phrog_1	149.5	2.66247e-44	integrase	integration and excision
UniRef90	UHGV-0041000_52	UniRef90_A0A412PAQ5	730.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0041000_52	679192.HMPREF9013_1328	172.0	0	Phage integrase family	N/A
Pfam	UHGV-0041000_52	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0041000_52	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0041000_52	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0041000_53	phrog_14982	55.1	0.0000000000000011	N/A	unknown function
UniRef90	UHGV-0041000_53	UniRef90_A0A412PBB0	376.0	0	Dihydroxyacetone kinase transcriptional activator DhaS	N/A
eggNOG-mapper	UHGV-0041000_53	706433.HMPREF9430_01397	376.0	0	transcriptional regulator	N/A
Pfam	UHGV-0041000_53	PF14278	N/A	N/A	Transcriptional regulator C-terminal region	TetR_C_8
COG	UHGV-0041000_53	COG1309	N/A	N/A	DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA	N/A
structural_annotation	UHGV-0041000_53	PF14278,MF_01839,TIGR02366,COG1309	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0041000	Yes	32,382	36	87	1