vOTU vOTU-133563

vOTU: vOTU-133563

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-133563
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → UBA4285 → UBA4285 sp900545225
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-02498 → vGENUS-03078 → vOTU-133563
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Pseudoruminococcus_A → Pseudoruminococcus_A massiliensis
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0023527
Biosample ID	SAMEA4766111
Genome length (bp)	24,590 bps
CheckV completeness	73.59% (Medium-quality)
CDS count	37
CDS density	91.62%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Pseudoruminococcus_A → Pseudoruminococcus_A massiliensis	Total connections	1	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → UBA4285 → UBA4285 sp900545225	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 73.59)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0023527_1	phrog_14105	225.7	0	N/A	unknown function
UniRef90	UHGV-0023527_1	UniRef90_UPI001D103E27	198.0	0	pentapeptide repeat-containing protein	N/A
eggNOG-mapper	UHGV-0023527_1	268407.PWYN_12330	136.0	2.27e-37	dextransucrase activity	N/A
Pfam	UHGV-0023527_1	PF01469	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide_2
COG	UHGV-0023527_1	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
KOfam	UHGV-0023527_4	K07741	131.3	1.5e-38	antB; anti-repressor protein	N/A
PHROG	UHGV-0023527_4	phrog_130	274.8	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0023527_4	UniRef90_A0A2V4EN93	282.0	0	Phage repressor protein/antirepressor Ant	N/A
eggNOG-mapper	UHGV-0023527_4	578234.B8R674_9CAUD	274.0	0	DNA binding	N/A
Pfam	UHGV-0023527_4	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0023527_4	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
structural_annotation	UHGV-0023527_4	PF03374,PF02498,TIGR02681,COG3645	N/A	N/A	N/A	N/A
UniRef90	UHGV-0023527_5	UniRef90_A0A174QJI6	85.9	2.11e-20	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0023527_5	526218.Sterm_3925	72.8	4.31e-16	N/A	N/A
Pfam	UHGV-0023527_5	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0023527_5	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0023527_6	K01356	177.1	0	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0023527_6	phrog_4	148.3	5.04467e-44	transcriptional repressor	transcription regulation
UniRef90	UHGV-0023527_6	UniRef90_C6LG10	209.0	0	Putative repressor LexA	N/A
eggNOG-mapper	UHGV-0023527_6	478749.BRYFOR_07570	209.0	0	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0023527_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0023527_6	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0023527_6	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0023527_6	PF01381,PF00717,MF_00015,NF041951,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0023527_7	1408322.JHYK01000035_gene11	86.3	1.21e-18	Metallo-beta-lactamase superfamily	N/A
COG	UHGV-0023527_7	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
KOfam	UHGV-0023527_8	K01356	88.6	1.2e-25	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0023527_8	phrog_4	64.9	1.9e-18	transcriptional repressor	transcription regulation
UniRef90	UHGV-0023527_8	UniRef90_A0A7X6VEC6	59.3	0.000000000564	Repressor LexA	N/A
eggNOG-mapper	UHGV-0023527_8	572479.Hprae_1030	65.9	0.0000000000041	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0023527_8	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0023527_8	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0023527_8	PF00717,NF007621	N/A	N/A	N/A	N/A
UniRef90	UHGV-0023527_9	UniRef90_A0A0Z8IAV1	79.3	0.00000000000000108	Membrane protein	N/A
KOfam	UHGV-0023527_10	K14059	163.2	0	int; integrase	N/A
PHROG	UHGV-0023527_10	phrog_1	174.3	0	integrase	integration and excision
UniRef90	UHGV-0023527_10	UniRef90_A0A143XPJ0	316.0	0	Tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-0023527_10	1280698.AUJS01000007_gene999	285.0	0	Phage integrase family	N/A
Pfam	UHGV-0023527_10	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0023527_10	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0023527_10	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0023527_11	K01448	116.9	2e-34	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0023527_11	phrog_435	188.4	0	endolysin	lysis
UniRef90	UHGV-0023527_11	UniRef90_A0A829ZDB6	213.0	0	N-acetylmuramoyl-L-alanine amidase LytC	N/A
eggNOG-mapper	UHGV-0023527_11	33035.JPJF01000090_gene96	199.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-0023527_11	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0023527_11	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0023527_11	PF01520,MF_00562,TIGR02883,COG0860,COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-0023527_12	phrog_4105	86.4	2.2e-25	N/A	unknown function
UniRef90	UHGV-0023527_12	UniRef90_A0A8D9UHA9	97.8	2.47e-24	Holin protein	N/A
eggNOG-mapper	UHGV-0023527_12	742733.HMPREF9469_05011	92.0	8.99e-23	N/A	N/A
PHROG	UHGV-0023527_13	phrog_1129	67.0	2e-19	holin	lysis
UniRef90	UHGV-0023527_13	UniRef90_A0A416G2E0	98.6	3.74e-25	Enolase	N/A
eggNOG-mapper	UHGV-0023527_13	693746.OBV_13280	80.9	6.94e-19	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0023527_13	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0023527_13	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0023527_14	phrog_5717	50.3	0.000000000000024	tail protein	tail
eggNOG-mapper	UHGV-0023527_14	508419.F8J176_9CAUD	66.2	0.00000000687	peptidoglycan catabolic process	N/A
PHROG	UHGV-0023527_15	phrog_9886	452.1	0	N/A	unknown function
UniRef90	UHGV-0023527_15	UniRef90_A0A374E8F3	427.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0023527_15	1120933.ATUY01000004_gene1009	408.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0023527_15	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0023527_15	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0023527_15	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0023527_15	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0023527_16	phrog_33	46.1	0.00000000000094	distal tail protein Dit	tail
UniRef90	UHGV-0023527_16	UniRef90_A0A374UNT1	177.0	0	MtfA protein	N/A
eggNOG-mapper	UHGV-0023527_16	610130.Closa_0753	154.0	1.06499e-43	phage tail	N/A
COG	UHGV-0023527_16	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0023527_16	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0023527_17	phrog_6900	149.5	2.94273e-44	tail length tape measure protein	tail
UniRef90	UHGV-0023527_17	UniRef90_A0A1F1CDX5	237.0	0	PblA	N/A
eggNOG-mapper	UHGV-0023527_17	936375.HMPREF1152_0688	245.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0023527_17	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0023527_18	phrog_1633	110.5	9.9e-33	N/A	unknown function
UniRef90	UHGV-0023527_18	UniRef90_UPI00148D39CA	82.8	4.73e-18	N/A	N/A
eggNOG-mapper	UHGV-0023527_18	1121864.OMO_02160	81.6	2.19e-18	N/A	N/A
Pfam	UHGV-0023527_18	PF17318	N/A	N/A	N/A	DUF5361
structural_annotation	UHGV-0023527_18	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-0023527_19	phrog_1526	60.8	2.1e-17	N/A	unknown function
eggNOG-mapper	UHGV-0023527_19	883110.HMPREF9260_00652	55.5	0.00000000911	N/A	N/A
PHROG	UHGV-0023527_20	phrog_117	128.3	4.8e-38	major tail protein	tail
UniRef90	UHGV-0023527_20	UniRef90_A0A437ULR3	179.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0023527_20	1123263.AUKY01000068_gene494	175.0	0	N/A	N/A
structural_annotation	UHGV-0023527_20	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0023527_21	phrog_123	40.8	0.000000000036	tail terminator	connector
eggNOG-mapper	UHGV-0023527_21	1423775.BAMN01000011_gene599	98.6	2.58e-25	N/A	N/A
structural_annotation	UHGV-0023527_21	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-0023527_23	phrog_501	90.4	1.6e-26	head closure Hc1	connector
UniRef90	UHGV-0023527_23	UniRef90_Q7Y4I1	127.0	7.03e-36	Gp43	N/A
eggNOG-mapper	UHGV-0023527_23	157924.Q7Y4I1_9CAUD	127.0	1.18e-36	N/A	N/A
structural_annotation	UHGV-0023527_23	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0023527_24	phrog_137	109.3	2e-32	head-tail adaptor Ad1	connector
UniRef90	UHGV-0023527_24	UniRef90_A0A3R9IJB2	166.0	0	Phage protein Gp19/Gp15/Gp42	N/A
eggNOG-mapper	UHGV-0023527_24	936375.HMPREF1152_0681	165.0	0	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-0023527_24	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-0023527_24	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-0023527_26	phrog_32396	124.3	3.3e-37	N/A	unknown function
UniRef90	UHGV-0023527_26	UniRef90_A0A1C6EHK1	287.0	0	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
eggNOG-mapper	UHGV-0023527_26	879308.HMPREF9130_1233	270.0	0	Phage capsid family	N/A
Pfam	UHGV-0023527_26	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0023527_26	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0023527_26	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0023527_27	phrog_233	89.2	7.5e-26	head scaffolding protein	head and packaging
UniRef90	UHGV-0023527_27	UniRef90_UPI000C81DDFB	100.0	4.32e-24	phage scaffold protein	N/A
eggNOG-mapper	UHGV-0023527_27	706433.HMPREF9430_01266	91.7	1.71e-21	N/A	N/A
Pfam	UHGV-0023527_27	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0023527_27	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0023527_28	phrog_17688	303.0	0	N/A	unknown function
UniRef90	UHGV-0023527_28	UniRef90_A0A329N608	550.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0023527_28	1280698.AUJS01000007_gene1036	533.0	0	phage terminase, large subunit	N/A
Pfam	UHGV-0023527_28	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0023527_28	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0023527_28	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0023527_29	phrog_3675	75.6	4.5e-22	N/A	unknown function
UniRef90	UHGV-0023527_29	UniRef90_G9YWE1	73.2	0.0000000000000218	YjcQ protein	N/A
eggNOG-mapper	UHGV-0023527_29	1111134.HMPREF1253_1941	68.2	0.000000000000278	YjcQ protein	N/A
Pfam	UHGV-0023527_29	PF09639	N/A	N/A	YjcQ protein	YjcQ
structural_annotation	UHGV-0023527_29	PF09639,TIGR04176,COG2345	N/A	N/A	N/A	N/A
PHROG	UHGV-0023527_31	phrog_2494	227.1	0	minor head protein	head and packaging
UniRef90	UHGV-0023527_31	UniRef90_A0A1Q9YI10	211.0	0	Ntox50 domain-containing protein	N/A
eggNOG-mapper	UHGV-0023527_31	1280698.AUJS01000007_gene1034	187.0	0	cell adhesion	N/A
Pfam	UHGV-0023527_31	PF15542	N/A	N/A	Bacterial toxin 50	Ntox50
COG	UHGV-0023527_31	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0023527_31	PF15542	N/A	N/A	N/A	N/A
PHROG	UHGV-0023527_32	phrog_104	263.6	0	portal protein	head and packaging
UniRef90	UHGV-0023527_32	UniRef90_A0A4R6QD01	529.0	0	SPP1 Gp6-like portal protein	N/A
eggNOG-mapper	UHGV-0023527_32	1280698.AUJS01000007_gene1033	475.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-0023527_32	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0023527_33	phrog_338	91.5	1.2e-26	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023527_33	UniRef90_M1PFG7	139.0	1.78e-40	Putative HNH endonuclease	N/A
eggNOG-mapper	UHGV-0023527_33	1289597.M1PFG7_9CAUD	139.0	2.98995e-41	endonuclease activity	N/A
Pfam	UHGV-0023527_33	PF01844	N/A	N/A	HNH endonuclease	HNH
structural_annotation	UHGV-0023527_33	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0023527_34	phrog_2245	49.2	0.000000000000095	nucleoside triphosphate pyrophosphohydrolase	other
PHROG	UHGV-0023527_35	phrog_6721	247.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0023527_35	665956.HMPREF1032_00655	237.0	0	N/A	N/A
structural_annotation	UHGV-0023527_35	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0023527_36	phrog_7566	56.1	5.4e-16	N/A	unknown function
PHROG	UHGV-0023527_37	phrog_9804	151.9	2.8026e-45	N/A	unknown function
UniRef90	UHGV-0023527_37	UniRef90_A0A412RQW3	146.0	2.40995e-41	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-0023527_37	903814.ELI_3550	108.0	1.96e-27	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0023527_37	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0023527_37	PF11417	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0023527	Yes	24,590	37	74	1