vOTU vOTU-134048

vOTU: vOTU-134048

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-134048
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00027 → vGENUS-09551 → vOTU-134048
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1485213
Biosample ID	SAMEA2042618
Genome length (bp)	36,660 bps
CheckV completeness	80.47% (Medium-quality)
CDS count	46
CDS density	89.90%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	1553	Host agreement	81.71
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	15	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 80.47)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1485213_1	K14059	100.6	2.4e-29	int; integrase	N/A
PHROG	UHGV-1485213_1	phrog_1	118.5	7.9e-35	integrase	integration and excision
UniRef90	UHGV-1485213_1	UniRef90_A0A1G5CL52	797.0	0	Phage integrase family protein	N/A
eggNOG-mapper	UHGV-1485213_1	693746.OBV_41260	183.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1485213_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1485213_1	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1485213_1	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1485213_2	phrog_1847	337.9	0	N/A	unknown function
UniRef90	UHGV-1485213_2	UniRef90_A0A174D4Z6	565.0	0	T5orf172 domain	N/A
eggNOG-mapper	UHGV-1485213_2	1256908.HMPREF0373_00641	537.0	0	T5orf172	N/A
Pfam	UHGV-1485213_2	PF13455	N/A	N/A	Meiotically up-regulated gene 113	MUG113
COG	UHGV-1485213_2	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1485213_2	PF13250,NF041454	N/A	N/A	N/A	N/A
PHROG	UHGV-1485213_3	phrog_1914	148.3	4.2039e-44	N/A	unknown function
UniRef90	UHGV-1485213_3	UniRef90_A0A374NDM7	331.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1485213_3	1160721.RBI_I01604	172.0	0	N/A	N/A
Pfam	UHGV-1485213_3	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1485213_3	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1485213_3	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-1485213_4	K22300	47.7	0.00000000000032	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1485213_4	phrog_8	41.1	0.000000000036	transcriptional regulator	transcription regulation
UniRef90	UHGV-1485213_4	UniRef90_UPI0015F3DE1D	107.0	1.07e-26	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1485213_4	272562.CA_C1559	67.4	0.00000000000249	sequence-specific DNA binding	N/A
Pfam	UHGV-1485213_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1485213_4	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1485213_4	PF05339,NF007257,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1485213_5	UniRef90_UPI001897B0FF	70.9	0.0000000000000091	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1485213_5	1121289.JHVL01000079_gene1187	59.7	0.0000000000377	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1485213_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1485213_5	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1485213_6	phrog_599	41.0	0.000000000037	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1485213_6	UniRef90_UPI0015F48AC0	169.0	0	Lar family restriction alleviation protein	N/A
Pfam	UHGV-1485213_6	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-1485213_6	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
structural_annotation	UHGV-1485213_6	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-1485213_7	phrog_6058	42.4	0.0000000000074	N/A	unknown function
structural_annotation	UHGV-1485213_7	NF033787	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1485213_8	COG1862	N/A	N/A	N/A	N/A
KOfam	UHGV-1485213_10	K03546	56.6	2.4e-16	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-1485213_10	phrog_1499	480.3	0	N/A	unknown function
UniRef90	UHGV-1485213_10	UniRef90_A0A2N0UXU2	747.0	0	Chromosome segregation protein	N/A
eggNOG-mapper	UHGV-1485213_10	645991.Sgly_0320	503.0	0	domain protein	N/A
Pfam	UHGV-1485213_10	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-1485213_10	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1485213_10	TIGR03185,COG5293	N/A	N/A	N/A	N/A
PHROG	UHGV-1485213_12	phrog_124	264.7	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1485213_12	UniRef90_A0A2N0UXR5	696.0	0	Phage nucleotide-binding protein	N/A
eggNOG-mapper	UHGV-1485213_12	411462.DORLON_00811	437.0	0	AAA domain	N/A
Pfam	UHGV-1485213_12	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1485213_12	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-1485213_13	phrog_2698	175.6	0	N/A	unknown function
UniRef90	UHGV-1485213_13	UniRef90_UPI000F54335B	198.0	0	N/A	N/A
eggNOG-mapper	UHGV-1485213_13	742723.HMPREF9477_00927	138.0	1.78e-39	N/A	N/A
structural_annotation	UHGV-1485213_13	PF17426,NF005674	N/A	N/A	N/A	N/A
KOfam	UHGV-1485213_14	K17677	363.8	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-1485213_14	phrog_16	297.0	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1485213_14	UniRef90_A0A412ULZ3	1048.0	0	ATP-dependent helicase	N/A
eggNOG-mapper	UHGV-1485213_14	1235798.C817_03499	839.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-1485213_14	mREase_IV_00005	134.0	1.3e-39	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1485213_14	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1485213_14	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1485213_14	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-1485213_14	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
KOfam	UHGV-1485213_15	K07505	401.2	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-1485213_15	phrog_2597	1164.1	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1485213_15	UniRef90_A0A2N0UXP7	1430.0	0	Regulatory protein RepA	N/A
eggNOG-mapper	UHGV-1485213_15	394503.Ccel_3304	960.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-1485213_15	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-1485213_15	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-1485213_15	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-1485213_15	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
PHROG	UHGV-1485213_16	phrog_140	89.3	4.7e-26	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1485213_16	UniRef90_A0A2N0UXU6	266.0	0	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-1485213_16	411462.DORLON_00806	206.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1485213_16	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1485213_16	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1485213_16	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1485213_17	PF02559,MF_00667,TIGR02861	N/A	N/A	N/A	N/A
Pfam	UHGV-1485213_18	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
PHROG	UHGV-1485213_19	phrog_2999	41.3	0.000000000034	N/A	unknown function
PHROG	UHGV-1485213_20	phrog_36	81.9	8.9e-24	transcriptional regulator	transcription regulation
UniRef90	UHGV-1485213_20	UniRef90_A0A2N0UXQ6	266.0	0	N/A	N/A
eggNOG-mapper	UHGV-1485213_20	1401067.HMPREF0872_06835	95.1	3.66e-23	N/A	N/A
Pfam	UHGV-1485213_20	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-1485213_20	PF07374,MF_00674,TIGR01636,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-1485213_21	K06909	396.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1485213_21	phrog_3717	146.3	1.4013e-45	terminase large subunit	head and packaging
UniRef90	UHGV-1485213_21	UniRef90_A0A2N0ULW5	1027.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-1485213_21	411461.DORFOR_01162	620.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1485213_21	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1485213_21	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1485213_21	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1485213_21	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1485213_21	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1485213_22	phrog_533	320.1	0	portal protein	head and packaging
UniRef90	UHGV-1485213_22	UniRef90_A0A2N0ULU9	823.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-1485213_22	1304866.K413DRAFT_3035	471.0	0	N/A	N/A
structural_annotation	UHGV-1485213_22	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1485213_23	phrog_581	310.1	0	minor head protein	head and packaging
UniRef90	UHGV-1485213_23	UniRef90_A0A2N0ULU5	731.0	0	Putative ADP-ribosyltransferase Certhrax	N/A
eggNOG-mapper	UHGV-1485213_23	1449050.JNLE01000003_gene3892	366.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1485213_23	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1485213_23	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1485213_23	PF06152,PF15887,TIGR01641,COG4307	N/A	N/A	N/A	N/A
PHROG	UHGV-1485213_24	phrog_2616	42.1	0.000000000018	N/A	unknown function
structural_annotation	UHGV-1485213_24	PF01281	N/A	N/A	N/A	N/A
PHROG	UHGV-1485213_25	phrog_194	101.1	1.3e-29	head scaffolding protein	head and packaging
UniRef90	UHGV-1485213_25	UniRef90_A0A2N0ULW9	333.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-1485213_25	742765.HMPREF9457_02126	177.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-1485213_25	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1485213_25	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1485213_26	phrog_422	224.8	0	major head protein	head and packaging
eggNOG-mapper	UHGV-1485213_26	693746.OBV_18090	393.0	0	N/A	N/A
structural_annotation	UHGV-1485213_26	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1485213_27	phrog_541	81.4	8.4e-24	head-tail adaptor	connector
UniRef90	UHGV-1485213_27	UniRef90_A0A371AQT0	109.0	1.94e-28	N/A	N/A
eggNOG-mapper	UHGV-1485213_27	1449050.JNLE01000003_gene3888	81.3	3.4e-18	N/A	N/A
PHROG	UHGV-1485213_28	phrog_3366	71.7	8.5e-21	N/A	unknown function
eggNOG-mapper	UHGV-1485213_28	1449050.JNLE01000003_gene3887	86.7	5.05e-20	N/A	N/A
Pfam	UHGV-1485213_28	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-1485213_28	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-1485213_29	phrog_556	116.2	1e-34	minor head protein	head and packaging
UniRef90	UHGV-1485213_29	UniRef90_UPI00189BC4F9	182.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1485213_29	1449050.JNLE01000003_gene3886	176.0	0	N/A	N/A
Pfam	UHGV-1485213_29	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1485213_29	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1485213_30	phrog_3266	104.4	7.3e-31	tail completion	connector
eggNOG-mapper	UHGV-1485213_30	1449050.JNLE01000003_gene3885	145.0	1.32002e-42	N/A	N/A
structural_annotation	UHGV-1485213_30	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-1485213_31	phrog_3099	148.8	2.24208e-44	N/A	unknown function
eggNOG-mapper	UHGV-1485213_31	1160721.RBI_II00532	237.0	0	N/A	N/A
structural_annotation	UHGV-1485213_31	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1485213_32	phrog_11299	139.1	2.09999e-41	N/A	unknown function
eggNOG-mapper	UHGV-1485213_32	1449050.JNLE01000003_gene3883	99.4	1.08e-24	N/A	N/A
structural_annotation	UHGV-1485213_32	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1485213_33	phrog_706	138.7	3.30006e-41	N/A	unknown function
UniRef90	UHGV-1485213_33	UniRef90_A0A2N0ULW2	368.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-1485213_33	1160721.RBI_II00530	212.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1485213_33	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1485213_33	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1485213_35	phrog_1535	481.5	0	tail length tape measure protein	tail
UniRef90	UHGV-1485213_35	UniRef90_A0A2N0ULX3	2145.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1485213_35	476272.RUMHYD_01785	347.0	0	phage tail tape measure protein	N/A
COG	UHGV-1485213_35	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1485213_35	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1485213_36	phrog_1194	63.7	2.8e-18	N/A	unknown function
eggNOG-mapper	UHGV-1485213_36	397290.C810_05238	94.0	1.02e-22	N/A	N/A
Pfam	UHGV-1485213_36	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1485213_36	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1485213_37	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1485213_38	PF08931	N/A	N/A	N/A	N/A
PHROG	UHGV-1485213_40	phrog_1863	70.7	1.7e-21	N/A	unknown function
UniRef90	UHGV-1485213_40	UniRef90_UPI001F223E8B	91.3	1.9e-22	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-1485213_40	1203606.HMPREF1526_02027	82.4	9.85e-20	N/A	N/A
PHROG	UHGV-1485213_41	phrog_443	64.6	2.5e-18	holin	lysis
UniRef90	UHGV-1485213_41	UniRef90_R6R2Q3	88.6	9.06e-22	Conserved domain protein	N/A
eggNOG-mapper	UHGV-1485213_41	1235797.C816_04172	82.0	6.09e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1485213_41	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1485213_41	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-1485213_42	K07273	199.6	0	acm; lysozyme	N/A
PHROG	UHGV-1485213_42	phrog_291	168.1	0	endolysin	lysis
UniRef90	UHGV-1485213_42	UniRef90_A0A373KPS8	531.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1485213_42	1120933.ATUY01000002_gene158	171.0	0	lysozyme activity	N/A
Pfam	UHGV-1485213_42	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-1485213_42	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1485213_42	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-1485213_42	PF01183,PF01471,COG3757	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1485213	Yes	36,660	41	80	1
UHGV-0042461	No	36,660	41	80	1