vOTU vOTU-134231

vOTU: vOTU-134231

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-134231
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vOTU-134231
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Flavonifractor → Flavonifractor plautii
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-1315551
Biosample ID	N/A
Genome length (bp)	21,333 bps
CheckV completeness	53.00% (Medium-quality)
CDS count	42
CDS density	92.88%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Flavonifractor → Flavonifractor plautii	Total connections	2	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 53)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1315551_3	phrog_5	81.4	1.6e-23	tail completion or Neck1 protein	connector
UniRef90	UHGV-1315551_3	UniRef90_UPI0018AA0B5A	257.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1315551_3	1280685.AUKC01000004_gene1630	108.0	2.34e-28	N/A	N/A
Pfam	UHGV-1315551_3	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1315551_3	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1315551_4	phrog_2468	115.2	1.9e-34	head morphogenesis	head and packaging
UniRef90	UHGV-1315551_4	UniRef90_A0A1C7FSE6	599.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1315551_4	1504822.CCNO01000013_gene286	172.0	0	cell adhesion	N/A
Pfam	UHGV-1315551_4	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-1315551_4	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-1315551_4	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1315551_4	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1315551_5	phrog_64	163.0	0	portal protein	head and packaging
UniRef90	UHGV-1315551_5	UniRef90_UPI0018A8A301	808.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1315551_5	673376.F2VHW1_9CAUD	225.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1315551_5	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1315551_5	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-1315551_6	K06909	119.2	4.4e-35	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1315551_6	phrog_10250	147.2	8.96831e-44	N/A	unknown function
UniRef90	UHGV-1315551_6	UniRef90_UPI0018A99FCF	565.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1315551_6	476272.RUMHYD_01756	380.0	0	N/A	N/A
Pfam	UHGV-1315551_6	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-1315551_6	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1315551_6	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1315551_6	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1315551_7	phrog_309	147.8	1.68156e-44	terminase small subunit	head and packaging
UniRef90	UHGV-1315551_7	UniRef90_A0A1C7FRC2	202.0	0	Transposase	N/A
eggNOG-mapper	UHGV-1315551_7	693746.OBV_18020	160.0	0	transposase activity	N/A
COG	UHGV-1315551_7	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-1315551_7	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-1315551_8	K22299	46.5	0.0000000000008	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1315551_8	phrog_8	64.1	3.2e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1315551_8	UniRef90_A0A4D7AHN1	97.8	3.23e-25	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1315551_8	1226322.HMPREF1545_00039	72.0	7.61e-16	sequence-specific DNA binding	N/A
Pfam	UHGV-1315551_8	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-1315551_8	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1315551_8	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1315551_9	phrog_801	101.2	1.3e-29	endolysin; inhibits RNA polymerase	lysis
UniRef90	UHGV-1315551_9	UniRef90_UPI001E45D411	152.0	2.8026e-45	N/A	N/A
eggNOG-mapper	UHGV-1315551_9	1094556.MCY_01183	82.4	3.52e-17	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
Pfam	UHGV-1315551_9	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
COG	UHGV-1315551_9	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-1315551_9	PF18909	N/A	N/A	N/A	N/A
KOfam	UHGV-1315551_10	K02647	43.5	0.0000000000037	cdaR; carbohydrate diacid regulator	N/A
UniRef90	UHGV-1315551_10	UniRef90_UPI00189C5C2B	58.9	0.00000000105	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1315551_10	PF13556	N/A	N/A	PucR C-terminal helix-turn-helix domain	HTH_30
COG	UHGV-1315551_10	COG3835	N/A	N/A	Sugar diacid utilization regulator CdaR	N/A
UniRef90	UHGV-1315551_12	UniRef90_A0A098GES5	108.0	7.55e-29	Putative phage associated protein	N/A
structural_annotation	UHGV-1315551_12	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
PHROG	UHGV-1315551_13	phrog_8684	87.0	3.4e-26	N/A	unknown function
UniRef90	UHGV-1315551_13	UniRef90_A0A1C7FQJ0	207.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1315551_13	1226322.HMPREF1545_00036	80.1	2.47e-17	YopX protein	N/A
Pfam	UHGV-1315551_13	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-1315551_13	PF09643,TIGR01671	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1315551_14	411462.DORLON_00765	82.4	9.91e-16	N/A	N/A
structural_annotation	UHGV-1315551_14	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1315551_16	phrog_38832	79.5	2e-38	N/A	unknown function
eggNOG-mapper	UHGV-1315551_16	665956.HMPREF1032_03087	106.0	1.28e-26	N/A	N/A
structural_annotation	UHGV-1315551_18	PF10711,TIGR03433	N/A	N/A	N/A	N/A
UniRef90	UHGV-1315551_19	UniRef90_A0A2V2FJ47	99.8	8.66e-24	N/A	N/A
Pfam	UHGV-1315551_19	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-1315551_20	phrog_424	100.8	1.6e-29	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1315551_20	UniRef90_A0A316S3E3	399.0	0	Reductase	N/A
eggNOG-mapper	UHGV-1315551_20	1235835.C814_01169	382.0	0	N/A	N/A
COG	UHGV-1315551_20	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
eggNOG-mapper	UHGV-1315551_21	742738.HMPREF9460_04055	90.9	2.02e-22	N/A	N/A
eggNOG-mapper	UHGV-1315551_23	1304866.K413DRAFT_1208	56.2	0.000000111	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
COG	UHGV-1315551_23	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-1315551_25	K03111	123.4	3.2e-36	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1315551_25	phrog_44	132.6	2.9e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1315551_25	UniRef90_A0A3D4MTY4	201.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1315551_25	1007096.BAGW01000030_gene5	191.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1315551_25	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1315551_25	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1315551_25	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1315551_25	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1315551_25	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1315551_26	phrog_4973	59.2	7e-17	N/A	unknown function
UniRef90	UHGV-1315551_26	UniRef90_UPI001D0904CC	82.0	5.26e-19	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1315551_26	339671.Asuc_1218	48.9	0.00000138	Helix-turn-helix domain	N/A
Pfam	UHGV-1315551_26	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-1315551_26	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
PHROG	UHGV-1315551_27	phrog_9804	159.6	0	N/A	unknown function
UniRef90	UHGV-1315551_27	UniRef90_UPI0015C5D332	183.0	0	replicative helicase loader/inhibitor	N/A
eggNOG-mapper	UHGV-1315551_27	1121344.JHZO01000003_gene981	185.0	0	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-1315551_27	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-1315551_27	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1315551_28	phrog_270	89.8	4.3e-26	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1315551_28	UniRef90_A0A6M3JHW0	98.2	2.66e-21	Putative DNA replication protein	N/A
eggNOG-mapper	UHGV-1315551_28	1095750.HMPREF9970_1674	131.0	3.52e-34	N/A	N/A
structural_annotation	UHGV-1315551_28	PF01475,NF006999,COG0735	N/A	N/A	N/A	N/A
PHROG	UHGV-1315551_29	phrog_398	169.4	0	N/A	unknown function
UniRef90	UHGV-1315551_29	UniRef90_UPI00137B6F1E	359.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-1315551_29	1485543.JMME01000021_gene802	181.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-1315551_29	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-1315551_29	PF16784	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1315551_30	1238184.CM001792_gene2549	52.8	0.00000575	N/A	N/A
structural_annotation	UHGV-1315551_30	PF12684,MF_03030,TIGR04328,COG4343	N/A	N/A	N/A	N/A
PHROG	UHGV-1315551_31	phrog_659	52.1	0.0000000000000067	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1315551_31	UniRef90_A0A858BRQ4	172.0	0	N/A	N/A
eggNOG-mapper	UHGV-1315551_31	1238184.CM001792_gene2550	76.6	0.0000000000000205	N/A	N/A
Pfam	UHGV-1315551_31	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-1315551_31	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
UniRef90	UHGV-1315551_34	UniRef90_UPI000F0633F9	86.3	6.94e-21	DNA-binding protein	N/A
eggNOG-mapper	UHGV-1315551_34	693746.OBV_43260	71.2	0.00000000000000105	N/A	N/A
structural_annotation	UHGV-1315551_34	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
UniRef90	UHGV-1315551_38	UniRef90_A0A845R4W0	117.0	3.78e-33	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1315551_38	742738.HMPREF9460_02486	70.1	0.00000000000000526	N/A	N/A
structural_annotation	UHGV-1315551_38	TIGR03070	N/A	N/A	N/A	N/A
PHROG	UHGV-1315551_39	phrog_8	60.8	3.8e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1315551_39	UniRef90_UPI001897E58E	115.0	5.71e-31	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1315551_39	742738.HMPREF9460_02485	115.0	1.05e-31	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1315551_39	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1315551_39	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1315551_39	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1315551_40	phrog_87	76.8	2.4e-22	metallo-protease	other
UniRef90	UHGV-1315551_40	UniRef90_UPI001899699D	184.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1315551_40	1007096.BAGW01000011_gene2354	161.0	0	IrrE N-terminal-like domain	N/A
Pfam	UHGV-1315551_40	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1315551_40	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1315551_40	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-1315551_41	phrog_17982	78.3	8.3e-23	N/A	unknown function
eggNOG-mapper	UHGV-1315551_41	1284686.HMPREF1630_01985	85.9	1.38e-16	N/A	N/A
Pfam	UHGV-1315551_41	PF14020	N/A	N/A	N/A	DUF4236
structural_annotation	UHGV-1315551_41	PF14020	N/A	N/A	N/A	N/A
KOfam	UHGV-1315551_42	K14059	93.5	3.8e-27	int; integrase	N/A
PHROG	UHGV-1315551_42	phrog_1	137.8	1.10001e-40	integrase	integration and excision
UniRef90	UHGV-1315551_42	UniRef90_UPI000F051A1D	550.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1315551_42	693746.OBV_43340	427.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1315551_42	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1315551_42	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1315551_42	PF00589,PF13495,MF_02055,TIGR02225,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1315551	Yes	21,333	52	53	1