vOTU vOTU-134403

vOTU: vOTU-134403

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-134403
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00381 → vGENUS-00754 → vOTU-134403
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger formicilis
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0086747
Biosample ID	N/A
Genome length (bp)	22,869 bps
CheckV completeness	66.37% (Medium-quality)
CDS count	34
CDS density	90.96%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger	Total connections	46	Host agreement	97.83
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger formicilis	Total connections	352	Host agreement	96.88

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 66.37)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0086747_1	phrog_194	79.8	4.6e-23	head scaffolding protein	head and packaging
UniRef90	UHGV-0086747_1	UniRef90_D4K444	167.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0086747_1	748224.HMPREF9436_03336	184.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-0086747_1	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0086747_1	PF06810,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0086747_2	phrog_3675	103.9	7.9e-31	N/A	unknown function
UniRef90	UHGV-0086747_2	UniRef90_A0A0E4H649	112.0	9.71e-30	YjcQ protein	N/A
eggNOG-mapper	UHGV-0086747_2	1120978.KB894082_gene1061	122.0	1.77e-34	YjcQ protein	N/A
Pfam	UHGV-0086747_2	PF09639	N/A	N/A	YjcQ protein	YjcQ
structural_annotation	UHGV-0086747_2	PF09639,TIGR04176,COG2345	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0086747_3	PF06442,MF_01194,NF000331,COG5475	N/A	N/A	N/A	N/A
PHROG	UHGV-0086747_4	phrog_193	118.3	8.7e-35	head maturation protease	head and packaging
UniRef90	UHGV-0086747_4	UniRef90_A0A6N8H118	351.0	0	CdiA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0086747_4	748224.HMPREF9436_01469	313.0	0	N/A	N/A
Pfam	UHGV-0086747_4	PF21814	N/A	N/A	N/A	DUF6883
COG	UHGV-0086747_4	COG5529	N/A	N/A	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	N/A
structural_annotation	UHGV-0086747_4	PF11429	N/A	N/A	N/A	N/A
PHROG	UHGV-0086747_5	phrog_104	224.8	0	portal protein	head and packaging
UniRef90	UHGV-0086747_5	UniRef90_A0A3E2U200	717.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0086747_5	748224.HMPREF9436_01468	702.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0086747_5	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0086747_5	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0086747_6	phrog_9	167.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0086747_6	UniRef90_UPI001F1A3C47	629.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0086747_6	748224.HMPREF9436_01467	757.0	0	phage terminase, large subunit	N/A
COG	UHGV-0086747_6	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0086747_6	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
UniRef90	UHGV-0086747_7	UniRef90_R6GFM0	73.9	0.00000000000000163	Conserved domain protein	N/A
structural_annotation	UHGV-0086747_7	PF19962	N/A	N/A	N/A	N/A
PHROG	UHGV-0086747_8	phrog_338	53.6	0.0000000000000048	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0086747_8	UniRef90_UPI0015F33F36	202.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0086747_8	748224.HMPREF9436_01465	198.0	0	N/A	N/A
PHROG	UHGV-0086747_9	phrog_5763	74.8	1e-21	N/A	unknown function
eggNOG-mapper	UHGV-0086747_9	1235800.C819_02269	68.9	0.000000000117	N/A	N/A
PHROG	UHGV-0086747_10	phrog_1281	120.5	9.4e-36	N/A	unknown function
UniRef90	UHGV-0086747_10	UniRef90_A0A2V2GNZ1	145.0	7.92014e-42	N/A	N/A
eggNOG-mapper	UHGV-0086747_10	1035193.HMPREF9073_01980	99.0	2e-24	N/A	N/A
Pfam	UHGV-0086747_10	PF13274	N/A	N/A	Antitoxin SocA-like, Panacea domain	SocA_Panacea
COG	UHGV-0086747_10	COG3600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0086747_10	PF13274,COG3600	N/A	N/A	N/A	N/A
PHROG	UHGV-0086747_11	phrog_36	75.2	1.2e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0086747_11	UniRef90_A0A3E2U224	108.0	1.88e-27	Sigma70_r4_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0086747_11	411471.SUBVAR_05843	143.0	5.43003e-42	N/A	N/A
structural_annotation	UHGV-0086747_11	PF04545,NF033634	N/A	N/A	N/A	N/A
KOfam	UHGV-0086747_12	K03497	89.4	7.3e-26	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0086747_12	phrog_4715	132.7	2.1e-39	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0086747_12	UniRef90_A0A1Q6T350	867.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0086747_12	411471.SUBVAR_05842	383.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0086747_12	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0086747_12	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0086747_12	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-0086747_13	K03496	232.4	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0086747_13	phrog_164	172.4	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0086747_13	UniRef90_A0A6N8H6J9	383.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-0086747_13	411471.SUBVAR_05839	277.0	0	AAA domain	N/A
Pfam	UHGV-0086747_13	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0086747_13	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0086747_13	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0086747_14	K02314	229.6	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0086747_14	phrog_19	212.4	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0086747_14	UniRef90_A0A1Q6T363	799.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0086747_14	411471.SUBVAR_05838	424.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0086747_14	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0086747_14	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0086747_14	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0086747_14	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0086747_15	phrog_19658	76.1	5e-22	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0086747_15	UniRef90_A0A6N8H2D2	268.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0086747_15	411471.SUBVAR_05835	219.0	0	Helix-turn-helix domain	N/A
Pfam	UHGV-0086747_15	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0086747_15	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0086747_15	PF13730,MF_01909,TIGR04176,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-0086747_16	K03111	128.6	8.2e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0086747_16	phrog_44	133.9	1.2e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0086747_16	UniRef90_A0A1Q6T3F1	289.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0086747_16	411471.SUBVAR_04646	184.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0086747_16	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0086747_16	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0086747_16	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0086747_16	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0086747_16	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0086747_17	phrog_1029	201.2	0	N/A	unknown function
UniRef90	UHGV-0086747_17	UniRef90_A0A0P0N9M8	128.0	1.47e-32	Phage-related protein	N/A
eggNOG-mapper	UHGV-0086747_17	411471.SUBVAR_05833	241.0	0	N/A	N/A
structural_annotation	UHGV-0086747_17	PF10065,COG5532	N/A	N/A	N/A	N/A
PHROG	UHGV-0086747_18	phrog_997	112.5	3.1e-33	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0086747_18	UniRef90_A0A429ZWU1	74.3	0.0000000000000184	Replication terminator protein	N/A
eggNOG-mapper	UHGV-0086747_18	411471.SUBVAR_05832	160.0	0	N/A	N/A
PHROG	UHGV-0086747_20	phrog_7566	75.4	5.7e-22	N/A	unknown function
eggNOG-mapper	UHGV-0086747_20	411471.SUBVAR_05830	110.0	3.94e-30	N/A	N/A
COG	UHGV-0086747_21	COG1327	N/A	N/A	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	N/A
structural_annotation	UHGV-0086747_21	PF04606,NF007241	N/A	N/A	N/A	N/A
PHROG	UHGV-0086747_22	phrog_72	49.9	0.000000000000054	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0086747_22	411471.SUBVAR_05829	206.0	0	N/A	N/A
structural_annotation	UHGV-0086747_22	PF05772,NF007281	N/A	N/A	N/A	N/A
COG	UHGV-0086747_23	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0086747_23	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0086747_24	phrog_10280	51.3	0.000000000000011	N/A	unknown function
eggNOG-mapper	UHGV-0086747_24	1211640.K4JWC4_9CAUD	62.8	0.000000000427	N/A	N/A
KOfam	UHGV-0086747_28	K07729	41.6	0.000000000025	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0086747_28	phrog_3	40.6	0.00000000011	transcriptional repressor	transcription regulation
UniRef90	UHGV-0086747_28	UniRef90_V1CM69	72.4	0.000000000000015	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0086747_28	1321814.HMPREF9089_00908	72.4	0.00000000000000252	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0086747_28	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0086747_28	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
KOfam	UHGV-0086747_29	K22300	42.2	0.000000000016	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0086747_29	phrog_8	51.4	0.000000000000027	transcriptional regulator	transcription regulation
UniRef90	UHGV-0086747_29	UniRef90_A0A367GFH2	103.0	9.83e-28	Transcriptional regulator	N/A
Pfam	UHGV-0086747_29	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0086747_29	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0086747_29	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0086747_30	K01356	147.0	2.20004e-43	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0086747_30	phrog_4	119.8	3.1e-35	transcriptional repressor	transcription regulation
UniRef90	UHGV-0086747_30	UniRef90_A0A1Q6T3E1	400.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0086747_30	411483.FAEPRAA2165_03041	155.0	2.8026e-45	N/A	N/A
Pfam	UHGV-0086747_30	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0086747_30	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0086747_30	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0086747_30	PF00717,PF01381,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
PHROG	UHGV-0086747_31	phrog_38135	70.8	1.6e-20	N/A	unknown function
UniRef90	UHGV-0086747_31	UniRef90_A0A1Q6T359	416.0	0	N/A	N/A
eggNOG-mapper	UHGV-0086747_31	742723.HMPREF9477_00941	95.1	4.48e-20	dextransucrase activity	N/A
Pfam	UHGV-0086747_31	PF14020	N/A	N/A	N/A	DUF4236
COG	UHGV-0086747_31	COG3118	N/A	N/A	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	N/A
structural_annotation	UHGV-0086747_31	PF14020	N/A	N/A	N/A	N/A
PHROG	UHGV-0086747_32	phrog_22683	153.6	0	N/A	unknown function
UniRef90	UHGV-0086747_32	UniRef90_A0A3E2U205	149.0	4.2039e-45	N/A	N/A
eggNOG-mapper	UHGV-0086747_32	482234.SCAZ3_03515	136.0	7.20001e-41	N/A	N/A
AcrCatalog	UHGV-0086747_32	cluster_3962	133.0	3.50325e-44	NA	N/A
Pfam	UHGV-0086747_32	PF13783	N/A	N/A	N/A	DUF4177
structural_annotation	UHGV-0086747_32	PF13783,NF008362,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0086747_33	phrog_9605	391.0	0	N/A	unknown function
UniRef90	UHGV-0086747_33	UniRef90_UPI0014593EBE	417.0	0	N/A	N/A
eggNOG-mapper	UHGV-0086747_33	641107.CDLVIII_4198	367.0	0	N/A	N/A
Pfam	UHGV-0086747_33	PF12358	N/A	N/A	N/A	DUF3644
Pfam	UHGV-0086747_33	PF18740	N/A	N/A	EC042_2821-like Restriction Endonuclease-like domain	EC042_2821
KOfam	UHGV-0086747_34	K14059	133.5	2.7e-39	int; integrase	N/A
PHROG	UHGV-0086747_34	phrog_1	152.9	2.8026e-45	integrase	integration and excision
UniRef90	UHGV-0086747_34	UniRef90_A0A1Q6T3G6	735.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0086747_34	428125.CLOLEP_02743	99.0	4.48e-20	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0086747_34	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0086747_34	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0086747_34	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0086747	Yes	22,869	57	66	1