vOTU vOTU-134695

vOTU: vOTU-134695

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-134695
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00030 → vGENUS-14853 → vOTU-134695
Host lineage	Bacteria → Firmicutes_A → Clostridia → Peptostreptococcales → Peptostreptococcaceae → Clostridioides → Clostridioides difficile
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0212406
Biosample ID	SAMN09781768
Genome length (bp)	30,216 bps
CheckV completeness	79.42% (Medium-quality)
CDS count	47
CDS density	95.08%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Peptostreptococcales → Peptostreptococcaceae → Clostridioides → Clostridioides difficile	Total connections	22	Host agreement	77.27
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter	Total connections	13	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 79.42)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0212406_1	phrog_18218	50.0	0.000000000000056	N/A	unknown function
eggNOG-mapper	UHGV-0212406_1	658655.HMPREF0988_02546	64.7	0.000000000000441	N/A	N/A
PHROG	UHGV-0212406_2	phrog_1863	58.3	2.5e-17	N/A	unknown function
eggNOG-mapper	UHGV-0212406_2	1226322.HMPREF1545_04027	68.9	0.0000000000000223	N/A	N/A
PHROG	UHGV-0212406_3	phrog_16164	66.2	2.3e-19	N/A	unknown function
eggNOG-mapper	UHGV-0212406_4	1469948.JPNB01000002_gene3853	55.5	0.00000696	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-0212406_4	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
PHROG	UHGV-0212406_5	phrog_14030	137.7	5.29999e-41	N/A	unknown function
UniRef90	UHGV-0212406_5	UniRef90_UPI0018A8CA3B	679.0	0	phage tail tip lysozyme	N/A
eggNOG-mapper	UHGV-0212406_5	33035.JPJF01000093_gene2240	306.0	0	NlpC/P60 family	N/A
Pfam	UHGV-0212406_5	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0212406_5	PF05382	N/A	N/A	Bacteriophage peptidoglycan hydrolase	Amidase_5
COG	UHGV-0212406_5	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0212406_5	PF18013,PF05382,NF033742,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0212406_6	phrog_1067	356.0	0	minor head protein	head and packaging
UniRef90	UHGV-0212406_6	UniRef90_UPI0018A95F43	1222.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0212406_6	1235798.C817_04594	579.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0212406_6	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0212406_6	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0212406_6	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0212406_6	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0212406_7	phrog_33	49.2	0.00000000000012	distal tail protein Dit	tail
UniRef90	UHGV-0212406_7	UniRef90_A0A3R6C171	156.0	6.02558e-44	Phage tail protein	N/A
eggNOG-mapper	UHGV-0212406_7	908340.HMPREF9406_2569	143.0	1.25e-39	phage tail	N/A
COG	UHGV-0212406_7	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0212406_7	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0212406_8	phrog_19074	475.6	0	N/A	unknown function
UniRef90	UHGV-0212406_8	UniRef90_UPI0018ABC231	1040.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0212406_8	1235792.C808_05377	534.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0212406_8	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0212406_8	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0212406_8	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0212406_8	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0212406_9	1235792.C808_05376	65.1	0.000000000000149	N/A	N/A
structural_annotation	UHGV-0212406_9	PF10122,COG4416	N/A	N/A	N/A	N/A
PHROG	UHGV-0212406_10	phrog_706	159.1	0	N/A	unknown function
UniRef90	UHGV-0212406_10	UniRef90_UPI0018AAC0D2	285.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0212406_10	1235792.C808_05375	147.0	6.75986e-42	COG NOG24969 non supervised orthologous group	N/A
Pfam	UHGV-0212406_10	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0212406_10	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0212406_11	phrog_4450	97.3	1.3e-28	N/A	unknown function
UniRef90	UHGV-0212406_11	UniRef90_UPI0018AB083C	60.1	0.00000000667	AP endonuclease	N/A
eggNOG-mapper	UHGV-0212406_11	658655.HMPREF0988_02554	67.4	0.00000000000106	N/A	N/A
Pfam	UHGV-0212406_11	PF20378	N/A	N/A	N/A	DUF6673
structural_annotation	UHGV-0212406_11	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0212406_12	phrog_3099	152.9	1.4013e-45	N/A	unknown function
eggNOG-mapper	UHGV-0212406_12	411468.CLOSCI_02404	197.0	0	N/A	N/A
structural_annotation	UHGV-0212406_12	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0212406_13	phrog_3266	150.4	4.2039e-45	tail completion	connector
eggNOG-mapper	UHGV-0212406_13	658655.HMPREF0988_02556	176.0	0	N/A	N/A
structural_annotation	UHGV-0212406_13	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0212406_14	phrog_556	147.5	2.66247e-44	minor head protein	head and packaging
UniRef90	UHGV-0212406_14	UniRef90_UPI00093128B4	164.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0212406_14	411462.DORLON_00783	171.0	0	N/A	N/A
structural_annotation	UHGV-0212406_14	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0212406_15	phrog_3366	143.3	8.70206e-43	N/A	unknown function
eggNOG-mapper	UHGV-0212406_15	411462.DORLON_00784	242.0	0	N/A	N/A
Pfam	UHGV-0212406_15	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0212406_15	PF20536,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0212406_16	phrog_541	70.4	2.4e-20	head-tail adaptor	connector
eggNOG-mapper	UHGV-0212406_16	411470.RUMGNA_02220	59.7	0.000000000984	N/A	N/A
PHROG	UHGV-0212406_17	phrog_422	237.6	0	major head protein	head and packaging
eggNOG-mapper	UHGV-0212406_17	658655.HMPREF0988_02560	480.0	0	N/A	N/A
structural_annotation	UHGV-0212406_17	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0212406_18	phrog_194	105.3	6.9e-31	head scaffolding protein	head and packaging
UniRef90	UHGV-0212406_18	UniRef90_A0A1C5W5U5	329.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0212406_18	742765.HMPREF9457_02126	306.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0212406_18	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0212406_18	PF06810	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0212406_19	742765.HMPREF9457_02124	169.0	0	N/A	N/A
PHROG	UHGV-0212406_20	phrog_581	332.8	0	minor head protein	head and packaging
UniRef90	UHGV-0212406_20	UniRef90_UPI0018AA9658	1075.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0212406_20	411461.DORFOR_00748	965.0	0	N/A	N/A
Pfam	UHGV-0212406_20	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0212406_20	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0212406_20	PF06152,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0212406_21	phrog_533	325.4	0	portal protein	head and packaging
UniRef90	UHGV-0212406_21	UniRef90_A0A414QMA7	803.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0212406_21	742765.HMPREF9457_02120	811.0	0	N/A	N/A
structural_annotation	UHGV-0212406_21	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0212406_22	K06909	91.0	1.5e-26	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0212406_22	phrog_2	92.6	6.8e-27	terminase large subunit	head and packaging
UniRef90	UHGV-0212406_22	UniRef90_A0A173ZBW3	844.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0212406_22	742765.HMPREF9457_02119	846.0	0	Terminase-like family	N/A
Pfam	UHGV-0212406_22	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0212406_22	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0212406_22	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0212406_22	PF04466,PF20441,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0212406_23	phrog_2412	145.2	2.29813e-43	N/A	unknown function
UniRef90	UHGV-0212406_23	UniRef90_UPI001E414EFE	171.0	0	KGG domain-containing protein	N/A
eggNOG-mapper	UHGV-0212406_23	742723.HMPREF9477_00912	207.0	0	N/A	N/A
PHROG	UHGV-0212406_25	phrog_36	59.1	8.1e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0212406_25	UniRef90_A0A416MN03	105.0	1.93e-26	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0212406_25	1256908.HMPREF0373_00671	158.0	0	N/A	N/A
structural_annotation	UHGV-0212406_25	PF04545,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
UniRef90	UHGV-0212406_27	UniRef90_UPI000CFA530D	89.4	6.68e-21	N/A	N/A
PHROG	UHGV-0212406_28	phrog_25456	65.2	3.5e-20	N/A	unknown function
UniRef90	UHGV-0212406_30	UniRef90_A0A1Q6J917	111.0	1.28e-29	N/A	N/A
PHROG	UHGV-0212406_31	phrog_25488	44.3	8.1e-16	N/A	unknown function
structural_annotation	UHGV-0212406_32	PF09889,MF_00649,COG4068	N/A	N/A	N/A	N/A
PHROG	UHGV-0212406_33	phrog_2562	182.4	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0212406_33	UniRef90_UPI0018AAF628	533.0	0	N/A	N/A
eggNOG-mapper	UHGV-0212406_33	411461.DORFOR_00014	312.0	0	N/A	N/A
Pfam	UHGV-0212406_33	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0212406_33	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0212406_33	PF14297	N/A	N/A	N/A	N/A
KOfam	UHGV-0212406_34	K01160	40.7	0.000000000058	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0212406_34	phrog_140	103.3	2.2e-30	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0212406_34	UniRef90_UPI001D0408BC	260.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0212406_34	411461.DORFOR_00015	167.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0212406_34	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0212406_34	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0212406_34	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0212406_35	phrog_1029	275.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0212406_35	411461.DORFOR_00016	321.0	0	N/A	N/A
structural_annotation	UHGV-0212406_35	PF10065,COG5532	N/A	N/A	N/A	N/A
PHROG	UHGV-0212406_36	phrog_997	151.2	2.8026e-45	replication terminator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0212406_36	411461.DORFOR_00017	199.0	0	N/A	N/A
KOfam	UHGV-0212406_37	K07455	208.8	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0212406_37	phrog_148	223.1	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0212406_37	UniRef90_UPI0018AC627C	536.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-0212406_37	742765.HMPREF9457_02107	466.0	0	RecT family	N/A
Pfam	UHGV-0212406_37	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0212406_37	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0212406_37	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0212406_37	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0212406_38	phrog_674	180.2	0	N/A	unknown function
UniRef90	UHGV-0212406_38	UniRef90_UPI0018ABB762	527.0	0	N/A	N/A
eggNOG-mapper	UHGV-0212406_38	742765.HMPREF9457_02106	216.0	0	N/A	N/A
Pfam	UHGV-0212406_38	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0212406_38	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-0212406_39	phrog_434	157.2	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0212406_39	UniRef90_UPI001D0490EC	435.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-0212406_39	742765.HMPREF9457_02105	358.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0212406_39	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0212406_39	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0212406_39	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0212406_39	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0212406_43	PF20037,COG3212	N/A	N/A	N/A	N/A
KOfam	UHGV-0212406_44	K07741	140.4	2.50006e-41	antB; anti-repressor protein	N/A
PHROG	UHGV-0212406_44	phrog_63	141.9	4.49957e-42	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0212406_44	UniRef90_A0A564SBT3	461.0	0	Phage antirepressor protein KilAC domain protein	N/A
eggNOG-mapper	UHGV-0212406_44	411470.RUMGNA_02184	345.0	0	Phage antirepressor protein	N/A
Pfam	UHGV-0212406_44	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-0212406_44	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0212406_44	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0212406_44	PF03374,PF08346,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
UniRef90	UHGV-0212406_45	UniRef90_A0A6N9LK73	103.0	1.85e-27	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0212406_45	887325.HMPREF0381_0113	93.2	2.78e-24	N/A	N/A
Pfam	UHGV-0212406_45	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0212406_45	PF05339,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0212406_46	K22300	63.4	4.5e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0212406_46	phrog_8	62.6	8.5e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0212406_46	UniRef90_A0A1Q6J9F6	221.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0212406_46	1262449.CP6013_3167	109.0	2.59e-28	Helix-turn-helix domain protein	N/A
Pfam	UHGV-0212406_46	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0212406_46	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0212406_46	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0212406_47	phrog_87	79.8	2.7e-23	metallo-protease	other
UniRef90	UHGV-0212406_47	UniRef90_A0A564SD80	172.0	0	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-0212406_47	742765.HMPREF9457_02093	164.0	0	IrrE N-terminal-like domain	N/A
Pfam	UHGV-0212406_47	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0212406_47	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0212406_47	PF06114,COG2856	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0212406	Yes	30,216	41	79	1