vOTU vOTU-135391

vOTU: vOTU-135391

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-135391
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00604 → vGENUS-02725 → vOTU-135391
Host lineage	Bacteria → Firmicutes → Bacilli → RF39 → UBA660 → CAG-1000
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1423699
Biosample ID	N/A
Genome length (bp)	22,934 bps
CheckV completeness	60.90% (Medium-quality)
CDS count	41
CDS density	89.70%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → RF39 → UBA660 → CAG-1000	Total connections	10	Host agreement	80
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → RF39 → UBA660 → CAG-1000	Total connections	19	Host agreement	89.47

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 60.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1423699_1	phrog_2303	80.5	2.7e-23	head scaffolding protein	head and packaging
structural_annotation	UHGV-1423699_1	MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-1423699_3	phrog_581	119.8	0	minor head protein	head and packaging
UniRef90	UHGV-1423699_3	UniRef90_R5A5Z0	622.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-1423699_3	1151292.QEW_4396	271.0	0	COG3209 Rhs family protein	N/A
Pfam	UHGV-1423699_3	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-1423699_3	PF18451	N/A	N/A	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
COG	UHGV-1423699_3	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1423699_3	PF06152,PF03496,NF041404	N/A	N/A	N/A	N/A
PHROG	UHGV-1423699_5	phrog_533	244.8	0	portal protein	head and packaging
UniRef90	UHGV-1423699_5	UniRef90_R5A3Z5	976.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-1423699_5	1117108.PAALTS15_13582	442.0	0	N/A	N/A
structural_annotation	UHGV-1423699_5	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
UniRef90	UHGV-1423699_6	UniRef90_R5A0K2	966.0	0	Putative phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1423699_6	645991.Sgly_0335	477.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-1423699_6	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1423699_6	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1423699_7	phrog_2412	90.6	1.5e-26	N/A	unknown function
UniRef90	UHGV-1423699_7	UniRef90_R5AAQ5	215.0	0	N/A	N/A
eggNOG-mapper	UHGV-1423699_7	1232449.BAHV02000018_gene1532	79.7	5.44e-17	N/A	N/A
structural_annotation	UHGV-1423699_8	PF15456	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1423699_9	PF16360	N/A	N/A	N/A	N/A
KOfam	UHGV-1423699_17	K07313	93.9	1.3e-27	pphA; serine/threonine protein phosphatase 1 [EC:3.1.3.16]	N/A
PHROG	UHGV-1423699_17	phrog_8238	702.8	0	RNA ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1423699_17	UniRef90_A0A3A8ZX80	583.0	0	Calcineurin	N/A
eggNOG-mapper	UHGV-1423699_17	411474.COPEUT_00782	549.0	0	AAA domain	N/A
Pfam	UHGV-1423699_17	PF13671	N/A	N/A	AAA domain	AAA_33
Pfam	UHGV-1423699_17	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
Pfam	UHGV-1423699_17	PF09511	N/A	N/A	RNA ligase	RNA_lig_T4_1
COG	UHGV-1423699_17	COG0639	N/A	N/A	Diadenosine tetraphosphatase ApaH/serine/threonine protein phosphatase, PP2A family	N/A
structural_annotation	UHGV-1423699_17	PF09511,PF13671,MF_04149,MF_01443,MF_03171,TIGR04075,COG5324,COG4639,COG2129	N/A	N/A	N/A	N/A
PHROG	UHGV-1423699_18	phrog_478	125.9	1.5e-37	site-specific recombination directionality factor RDF	integration and excision
eggNOG-mapper	UHGV-1423699_18	1110697.NCAST_08_01370	111.0	6.75e-30	N/A	N/A
PHROG	UHGV-1423699_21	phrog_59	58.6	9e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1423699_21	UniRef90_UPI001D0B177D	77.4	0.0000000000000234	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1423699_21	1396.DJ87_2709	68.2	0.0000000000293	NUMOD4 motif	N/A
structural_annotation	UHGV-1423699_21	PF13392,PF07453	N/A	N/A	N/A	N/A
KOfam	UHGV-1423699_23	K03111	126.5	3.3e-37	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1423699_23	phrog_44	135.3	4.1e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1423699_23	UniRef90_A0A7X6XBF9	155.0	1.4013e-45	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1423699_23	1220551.SCHR_00775	123.0	3.95e-34	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1423699_23	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1423699_23	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1423699_23	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1423699_23	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1423699_23	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1423699_24	phrog_1123	59.3	3.1e-17	N/A	unknown function
eggNOG-mapper	UHGV-1423699_24	1308863.U5J9F3_9CAUD	60.1	0.00000000132	N/A	N/A
PHROG	UHGV-1423699_25	phrog_72	53.6	0.0000000000000034	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1423699_25	UniRef90_UPI000C7BF263	126.0	5.76e-34	recombination protein NinB	N/A
eggNOG-mapper	UHGV-1423699_25	508419.F8J186_9CAUD	134.0	6.29e-38	N/A	N/A
structural_annotation	UHGV-1423699_25	PF05772,NF007281	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1423699_27	1123263.AUKY01000096_gene1822	56.6	0.000000225	C-5 cytosine-specific DNA methylase	N/A
COG	UHGV-1423699_27	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-1423699_30	phrog_434	78.6	9.6e-23	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
Pfam	UHGV-1423699_30	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
structural_annotation	UHGV-1423699_30	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-1423699_31	phrog_155	79.0	6.7e-23	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1423699_31	UniRef90_UPI0018AB5C6B	124.0	1.9e-31	ERF family protein	N/A
eggNOG-mapper	UHGV-1423699_31	536232.CLM_1632	107.0	4.7e-26	ERF superfamily	N/A
Pfam	UHGV-1423699_31	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1423699_31	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-1423699_33	K02086	78.0	1.1e-22	dnaD; DNA replication protein	N/A
PHROG	UHGV-1423699_33	phrog_5708	242.2	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1423699_33	UniRef90_UPI000EA32791	193.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-1423699_33	1196322.A370_02071	182.0	0	DnaD domain protein	N/A
Pfam	UHGV-1423699_33	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-1423699_33	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-1423699_33	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1423699_33	TIGR01714	N/A	N/A	N/A	N/A
PHROG	UHGV-1423699_35	phrog_989	41.5	0.000000000015	N/A	unknown function
eggNOG-mapper	UHGV-1423699_35	1449343.JQLQ01000002_gene672	48.5	0.00000079	N/A	N/A
KOfam	UHGV-1423699_36	K14056	51.1	0.000000000000024	puuR; HTH-type transcriptional regulator, repressor for puuD	N/A
PHROG	UHGV-1423699_36	phrog_3	43.0	0.000000000017	transcriptional repressor	transcription regulation
UniRef90	UHGV-1423699_36	UniRef90_A0A644XFH1	55.1	0.0000000706	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1423699_36	649349.Lbys_1331	56.2	0.0000000318	sequence-specific DNA binding	N/A
Pfam	UHGV-1423699_36	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1423699_36	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
KOfam	UHGV-1423699_37	K22300	52.1	0.000000000000015	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1423699_37	phrog_8	57.8	2.5e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1423699_37	UniRef90_R5A425	107.0	1.03e-27	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1423699_37	525257.HMPREF0204_12929	55.8	0.000000124	XRE family transcriptional regulator	N/A
Pfam	UHGV-1423699_37	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1423699_37	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1423699_37	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1423699_38	phrog_87	40.7	0.000000000025	metallo-protease	other
UniRef90	UHGV-1423699_38	UniRef90_R5AAT8	193.0	0	Peptidase_M78 domain-containing protein	N/A
Pfam	UHGV-1423699_38	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
structural_annotation	UHGV-1423699_38	PF06114,COG2856	N/A	N/A	N/A	N/A
Pfam	UHGV-1423699_39	PF14471	N/A	N/A	N/A	DUF4428
KOfam	UHGV-1423699_40	K14059	178.2	0	int; integrase	N/A
PHROG	UHGV-1423699_40	phrog_1	154.0	1.4013e-45	integrase	integration and excision
UniRef90	UHGV-1423699_40	UniRef90_R5A639	677.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1423699_40	888746.HMPREF9180_0151	115.0	5.55e-26	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1423699_40	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1423699_40	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1423699_40	PF00589,PF14659,PF14657,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1423699	Yes	22,934	27	61	1