vOTU vOTU-135827

vOTU: vOTU-135827

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-135827
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00134 → vGENUS-15086 → vOTU-135827
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0000458
Biosample ID	N/A
Genome length (bp)	29,235 bps
CheckV completeness	83.09% (Medium-quality)
CDS count	41
CDS density	91.86%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	1212	Host agreement	85.89
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 83.09)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0000458_1	1321372.AQQB01000002_gene484	47.4	0.0000034	N/A	N/A
KOfam	UHGV-0000458_2	K14059	94.5	1.7e-27	int; integrase	N/A
PHROG	UHGV-0000458_2	phrog_1	117.3	1.8e-34	integrase	integration and excision
UniRef90	UHGV-0000458_2	UniRef90_A0A1G5CL52	795.0	0	Phage integrase family protein	N/A
eggNOG-mapper	UHGV-0000458_2	693746.OBV_41260	181.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0000458_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0000458_2	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0000458_2	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0000458_4	phrog_1914	145.3	3.50325e-43	N/A	unknown function
UniRef90	UHGV-0000458_4	UniRef90_A0A373XNL4	335.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0000458_4	1160721.RBI_I01604	167.0	0	N/A	N/A
Pfam	UHGV-0000458_4	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0000458_4	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0000458_4	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-0000458_5	phrog_8	45.1	0.000000000002	transcriptional regulator	transcription regulation
UniRef90	UHGV-0000458_5	UniRef90_UPI0015F3DE1D	286.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0000458_5	663278.Ethha_2423	73.2	0.0000000000000185	sequence-specific DNA binding	N/A
Pfam	UHGV-0000458_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0000458_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0000458_5	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0000458_6	UniRef90_UPI000E51362F	132.0	4.37e-39	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0000458_6	411461.DORFOR_00030	50.8	0.000000123	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0000458_6	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0000458_6	PF13443,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0000458_8	PF11614,TIGR02588,COG2847	N/A	N/A	N/A	N/A
PHROG	UHGV-0000458_9	phrog_6058	42.4	0.0000000000077	N/A	unknown function
structural_annotation	UHGV-0000458_9	NF033787	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0000458_10	COG1862	N/A	N/A	N/A	N/A
KOfam	UHGV-0000458_14	K03497	153.2	1.4013e-45	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0000458_14	phrog_6218	245.4	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000458_14	UniRef90_UPI000E47CAB6	694.0	0	ParB/RepB/Spo0J family partition protein	N/A
eggNOG-mapper	UHGV-0000458_14	1160721.RBI_I01596	241.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0000458_14	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-0000458_14	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-0000458_14	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0000458_14	PF18579,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0000458_16	phrog_824	145.8	1.30321e-43	N/A	unknown function
UniRef90	UHGV-0000458_16	UniRef90_A0A3D3D6C6	243.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0000458_16	397288.C806_00096	157.0	0	VRR_NUC	N/A
Pfam	UHGV-0000458_16	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0000458_16	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-0000458_18	phrog_2118	117.9	9.2e-35	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000458_18	UniRef90_A0A374DVG7	249.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0000458_18	610130.Closa_0730	149.0	5.60519e-45	HNH endonuclease	N/A
Pfam	UHGV-0000458_18	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0000458_18	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0000458_18	TIGR02646,COG1403	N/A	N/A	N/A	N/A
UniRef90	UHGV-0000458_19	UniRef90_UPI000E4DC4DA	82.0	1.71e-17	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-0000458_19	PF15597	N/A	N/A	N/A	N/A
PHROG	UHGV-0000458_21	phrog_3584	150.6	9.80909e-45	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0000458_21	1235800.C819_00515	73.6	0.00000000000104	N/A	N/A
structural_annotation	UHGV-0000458_21	PF21578,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-0000458_22	phrog_31049	40.5	0.000000000000057	N/A	unknown function
eggNOG-mapper	UHGV-0000458_22	431943.CKL_4074	52.0	0.00000166	N/A	N/A
structural_annotation	UHGV-0000458_22	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0000458_23	phrog_119	69.4	5.3e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000458_23	UniRef90_A0A412ULY9	219.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0000458_23	1158607.UAU_01026	100.0	5.85e-26	HNH endonuclease	N/A
Pfam	UHGV-0000458_23	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0000458_23	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0000458_24	phrog_5110	81.4	7.7e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0000458_24	UniRef90_A0A1M5U1D5	112.0	2.41e-30	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0000458_24	1211817.CCAT010000053_gene2128	100.0	4.45e-26	N/A	N/A
Pfam	UHGV-0000458_24	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0000458_24	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0000458_25	phrog_9	283.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0000458_25	UniRef90_A0A412UM03	1090.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0000458_25	86416.Clopa_0337	635.0	0	Phage Terminase	N/A
Pfam	UHGV-0000458_25	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0000458_25	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0000458_25	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0000458_25	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0000458_26	phrog_12	98.2	6.9e-29	portal protein	head and packaging
UniRef90	UHGV-0000458_26	UniRef90_A0A412ULV9	744.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0000458_26	1415774.U728_1254	258.0	0	Phage portal protein	N/A
Pfam	UHGV-0000458_26	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0000458_26	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0000458_26	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0000458_26	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0000458_27	K01358	135.3	6e-40	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0000458_27	phrog_94	207.2	0	head maturation protease	head and packaging
UniRef90	UHGV-0000458_27	UniRef90_A0A412ULU1	442.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0000458_27	86416.Clopa_0340	172.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0000458_27	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0000458_27	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0000458_27	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0000458_28	phrog_10	126.4	2.7e-37	major head protein	head and packaging
UniRef90	UHGV-0000458_28	UniRef90_A0A412ULW9	739.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0000458_28	1211817.CCAT010000053_gene2132	325.0	0	Phage capsid family	N/A
Pfam	UHGV-0000458_28	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0000458_28	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0000458_28	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0000458_28	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0000458_29	phrog_749	56.0	6.2e-16	N/A	unknown function
UniRef90	UHGV-0000458_29	UniRef90_A0A1G5CMX8	107.0	2.14e-28	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0000458_29	1211817.CCAT010000053_gene2133	59.7	0.000000000292	N/A	N/A
PHROG	UHGV-0000458_30	phrog_19734	76.4	3.2e-22	N/A	unknown function
UniRef90	UHGV-0000458_30	UniRef90_UPI00057FE645	60.1	0.00000000221	phage head closure protein	N/A
eggNOG-mapper	UHGV-0000458_30	86416.Clopa_0343	63.9	0.0000000000142	N/A	N/A
NCBIFam	UHGV-0000458_30	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0000458_30	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0000458_31	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
UniRef90	UHGV-0000458_32	UniRef90_UPI000E5564A4	272.0	0	HK97 gp10 family phage protein	N/A
Pfam	UHGV-0000458_32	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0000458_32	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0000458_33	phrog_88	74.7	1.3e-21	major tail protein	tail
UniRef90	UHGV-0000458_33	UniRef90_A0A1G5CNS8	152.0	3.75548e-43	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0000458_33	397288.C806_05077	68.6	0.0000000000134	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0000458_33	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0000458_33	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0000458_34	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-0000458_35	K20283	56.4	6.7e-17	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-0000458_35	phrog_1272	260.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0000458_35	UniRef90_A0A412ULX0	1562.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0000458_35	588581.Cpap_1264	207.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0000458_35	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0000458_35	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0000458_35	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0000458_36	phrog_33	79.2	9.3e-23	distal tail protein Dit	tail
UniRef90	UHGV-0000458_36	UniRef90_A0A1G5CPA2	124.0	5.97e-31	Phage-related protein	N/A
eggNOG-mapper	UHGV-0000458_36	1160721.RBI_I01575	94.4	2.51e-20	Phage tail protein	N/A
COG	UHGV-0000458_36	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0000458_36	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0000458_37	phrog_1067	94.0	6.2e-28	minor head protein	head and packaging
UniRef90	UHGV-0000458_37	UniRef90_A0A1G5CPD2	145.0	2.85e-36	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-0000458_37	1462527.CCDM010000003_gene3730	62.0	0.000000201	gp58-like protein	N/A
NCBIFam	UHGV-0000458_37	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0000458_37	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0000458_37	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0000458_38	PF10651,PF15432,PF08931,TIGR03711	N/A	N/A	N/A	N/A
PHROG	UHGV-0000458_40	phrog_199	73.7	2.3e-21	holin	lysis
UniRef90	UHGV-0000458_40	UniRef90_A0A2N0ULW7	270.0	0	Holin	N/A
eggNOG-mapper	UHGV-0000458_40	1160721.RBI_I01565	140.0	7.09001e-41	Bacteriophage holin family	N/A
Pfam	UHGV-0000458_40	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0000458_40	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0000458_40	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0000458_40	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0000458_41	K01447	56.4	6.7e-16	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0000458_41	phrog_20388	308.6	0	endolysin	lysis
UniRef90	UHGV-0000458_41	UniRef90_A0A374N1L8	552.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0000458_41	1203606.HMPREF1526_00253	317.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0000458_41	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0000458_41	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0000458_41	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0000458_41	PF01510,PF01476,PF15591,MF_02014,MF_04111,MF_01354,NF008758,NF010723,TIGR00405,COG3023,COG5004,COG2139	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0000458	Yes	29,235	40	83	1