vOTU vOTU-135848

vOTU: vOTU-135848

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-135848
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00089 → vGENUS-00825 → vOTU-135848
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0018254
Biosample ID	SAMEA4765908
Genome length (bp)	21,448 bps
CheckV completeness	60.61% (Medium-quality)
CDS count	27
CDS density	93.14%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans	Total connections	61	Host agreement	98.36
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D	Total connections	4	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 60.61)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0018254_1	UniRef90_A0A5R9MHA3	221.0	0	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0018254_1	875454.BAEW01000002_gene486	50.1	0.00000461	N/A	N/A
structural_annotation	UHGV-0018254_1	PF07374	N/A	N/A	N/A	N/A
Pfam	UHGV-0018254_2	PF20505	N/A	N/A	N/A	DUF6731
structural_annotation	UHGV-0018254_2	PF20505	N/A	N/A	N/A	N/A
KOfam	UHGV-0018254_4	K06909	418.5	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0018254_4	phrog_18557	160.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0018254_4	UniRef90_A0A1C6IMR2	1087.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0018254_4	411461.DORFOR_01162	661.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0018254_4	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0018254_4	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0018254_4	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0018254_4	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0018254_4	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0018254_5	phrog_533	348.8	0	portal protein	head and packaging
UniRef90	UHGV-0018254_5	UniRef90_R6TDI6	874.0	0	Phage portal protein SPP1 Gp6-like	N/A
eggNOG-mapper	UHGV-0018254_5	1304866.K413DRAFT_3035	437.0	0	N/A	N/A
structural_annotation	UHGV-0018254_5	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0018254_6	phrog_581	335.3	0	minor head protein	head and packaging
UniRef90	UHGV-0018254_6	UniRef90_R6SXL7	989.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0018254_6	658655.HMPREF0988_02563	405.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0018254_6	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0018254_6	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0018254_6	PF06152	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0018254_7	PF12305	N/A	N/A	N/A	N/A
PHROG	UHGV-0018254_8	phrog_194	98.1	1e-28	head scaffolding protein	head and packaging
UniRef90	UHGV-0018254_8	UniRef90_R6U550	366.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0018254_8	742765.HMPREF9457_02126	149.0	7.48293e-43	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0018254_8	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0018254_8	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0018254_9	phrog_544	344.0	0	major head protein	head and packaging
UniRef90	UHGV-0018254_9	UniRef90_R6T873	659.0	0	Major head protein	N/A
eggNOG-mapper	UHGV-0018254_9	936580.HMPREF1516_0718	318.0	0	N/A	N/A
NCBIFam	UHGV-0018254_9	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0018254_9	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0018254_10	phrog_541	93.2	1.9e-27	head-tail adaptor	connector
UniRef90	UHGV-0018254_10	UniRef90_A0A371AQT0	103.0	4.98e-26	N/A	N/A
eggNOG-mapper	UHGV-0018254_10	1304866.K413DRAFT_3039	94.7	2e-23	N/A	N/A
PHROG	UHGV-0018254_11	phrog_3366	75.6	6.1e-23	N/A	unknown function
eggNOG-mapper	UHGV-0018254_11	1449050.JNLE01000003_gene3887	80.5	1.03e-17	N/A	N/A
Pfam	UHGV-0018254_11	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0018254_11	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0018254_12	phrog_556	124.1	4.5e-37	minor head protein	head and packaging
UniRef90	UHGV-0018254_12	UniRef90_A0A1M7NJ72	124.0	1.39e-33	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0018254_12	1449050.JNLE01000003_gene3886	108.0	2.25e-28	N/A	N/A
Pfam	UHGV-0018254_12	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0018254_12	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0018254_13	phrog_3266	124.9	3.4e-37	tail completion	connector
eggNOG-mapper	UHGV-0018254_13	411902.CLOBOL_00130	111.0	3.08e-29	N/A	N/A
structural_annotation	UHGV-0018254_13	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0018254_14	phrog_3099	148.3	3.36312e-44	N/A	unknown function
eggNOG-mapper	UHGV-0018254_14	1160721.RBI_II00532	207.0	0	N/A	N/A
structural_annotation	UHGV-0018254_14	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0018254_15	phrog_11299	181.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0018254_15	1449050.JNLE01000003_gene3883	69.3	0.00000000000178	N/A	N/A
structural_annotation	UHGV-0018254_15	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0018254_16	phrog_706	145.5	2.70451e-43	N/A	unknown function
UniRef90	UHGV-0018254_16	UniRef90_A0A1I0K8S4	214.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0018254_16	1449050.JNLE01000003_gene3882	197.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0018254_16	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0018254_16	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0018254_17	phrog_1535	603.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0018254_17	UniRef90_R6TDK7	712.0	0	Phage-related protein-like protein	N/A
eggNOG-mapper	UHGV-0018254_17	1160721.RBI_II00528	448.0	0	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-0018254_17	COG1006	N/A	N/A	Multisubunit Na+/H+ antiporter, MnhC subunit	N/A
structural_annotation	UHGV-0018254_17	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0018254_18	phrog_1194	90.7	1.1e-26	N/A	unknown function
eggNOG-mapper	UHGV-0018254_18	1160721.RBI_II00527	207.0	0	N/A	N/A
structural_annotation	UHGV-0018254_18	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0018254_19	phrog_6616	54.1	2.2e-25	tail protein	tail
eggNOG-mapper	UHGV-0018254_19	1160721.RBI_II00526	658.0	0	N/A	N/A
structural_annotation	UHGV-0018254_19	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0018254_23	phrog_199	85.0	7.4e-25	holin	lysis
UniRef90	UHGV-0018254_23	UniRef90_A0A5R9MH90	266.0	0	Phage holin family protein	N/A
eggNOG-mapper	UHGV-0018254_23	887325.HMPREF0381_0407	171.0	0	toxin secretion phage lysis holin	N/A
Pfam	UHGV-0018254_23	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0018254_23	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0018254_23	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0018254_23	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0018254_24	K01447	58.4	1.3e-16	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0018254_24	phrog_7698	164.5	0	endolysin	lysis
UniRef90	UHGV-0018254_24	UniRef90_A0A5R9MKH3	520.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0018254_24	877411.JMMA01000002_gene2384	192.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0018254_24	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0018254_24	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0018254_24	PF01510,PF18342,MF_04111,NF008758,COG3023,COG3807	N/A	N/A	N/A	N/A
KOfam	UHGV-0018254_25	K03071	47.4	0.00000000000027	secB; preprotein translocase subunit SecB	N/A
PHROG	UHGV-0018254_25	phrog_21664	48.1	0.00000000000022	N/A	unknown function
UniRef90	UHGV-0018254_25	UniRef90_UPI001AE7FA25	92.4	1.94e-21	protein-export chaperone SecB	N/A
eggNOG-mapper	UHGV-0018254_25	397290.C810_04111	71.2	0.000000000000053	Preprotein translocase subunit SecB	N/A
Pfam	UHGV-0018254_25	PF02556	N/A	N/A	Preprotein translocase subunit SecB	SecB
structural_annotation	UHGV-0018254_25	PF02556,MF_00821,NF004391,COG1952	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0018254	Yes	21,448	44	61	1