vOTU vOTU-136503

vOTU: vOTU-136503

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-136503
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00987 → vGENUS-00899 → vOTU-136503
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → CAG-217 → CAG-217 sp000436335
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0069488
Biosample ID	N/A
Genome length (bp)	28,778 bps
CheckV completeness	72.52% (Medium-quality)
CDS count	40
CDS density	96.05%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → CAG-217 → CAG-217 sp000436335	Total connections	142	Host agreement	98.59
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → CAG-217 → CAG-217 sp000436335	Total connections	235	Host agreement	99.57

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 72.52)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0069488_1	phrog_22978	1470.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0069488_1	1410650.JHWL01000003_gene2814	94.4	3.74e-16	N/A	N/A
Pfam	UHGV-0069488_1	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
PHROG	UHGV-0069488_5	phrog_511	375.3	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0069488_5	1410650.JHWL01000003_gene2827	249.0	0	N/A	N/A
structural_annotation	UHGV-0069488_5	PF11134,MF_01605,NF038128,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0069488_6	phrog_12105	148.5	2.10195e-44	N/A	unknown function
eggNOG-mapper	UHGV-0069488_6	1519439.JPJG01000060_gene1891	56.2	0.0000000202	N/A	N/A
PHROG	UHGV-0069488_8	phrog_1357	253.3	0	major head protein	head and packaging
UniRef90	UHGV-0069488_8	UniRef90_A0A1I0BH03	316.0	0	Major capsid protein, N4-gp56 family	N/A
eggNOG-mapper	UHGV-0069488_8	748224.HMPREF9436_02545	269.0	0	N/A	N/A
Pfam	UHGV-0069488_8	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0069488_8	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0069488_8	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0069488_9	phrog_13908	382.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0069488_9	1410650.JHWL01000003_gene2831	108.0	1.41e-24	N/A	N/A
KOfam	UHGV-0069488_10	K07584	44.1	0.0000000000042	N/A	N/A
PHROG	UHGV-0069488_10	phrog_4478	47.4	0.00000000000025	peptidase	other
Pfam	UHGV-0069488_10	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
structural_annotation	UHGV-0069488_10	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0069488_11	phrog_156	294.5	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0069488_11	1410650.JHWL01000003_gene2833	500.0	0	N/A	N/A
structural_annotation	UHGV-0069488_11	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0069488_12	K06909	153.6	1.4013e-45	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0069488_12	phrog_979	163.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0069488_12	UniRef90_R6IPR7	983.0	0	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0069488_12	1410650.JHWL01000003_gene2834	533.0	0	N/A	N/A
Pfam	UHGV-0069488_12	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0069488_12	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0069488_12	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0069488_13	phrog_1206	45.5	0.000000000000011	terminase small subunit	head and packaging
KOfam	UHGV-0069488_15	K01520	138.0	8.19998e-41	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0069488_15	phrog_135	114.8	6.5e-34	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0069488_15	UniRef90_R6ILQ3	252.0	0	Deoxyuridine 5'-triphosphate nucleotidohydrolase	N/A
eggNOG-mapper	UHGV-0069488_15	1282887.AUJG01000016_gene1113	142.0	1.48e-40	N/A	N/A
Pfam	UHGV-0069488_15	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0069488_15	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0069488_15	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0069488_15	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
PHROG	UHGV-0069488_16	phrog_355	70.2	2.9e-20	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0069488_16	UniRef90_UPI001E585BFA	181.0	0	N/A	N/A
eggNOG-mapper	UHGV-0069488_16	97138.C820_00250	130.0	9.32e-38	N/A	N/A
Pfam	UHGV-0069488_16	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0069488_16	PF14359,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0069488_19	phrog_7704	43.4	0.0000000000056	N/A	unknown function
Pfam	UHGV-0069488_19	PF04448	N/A	N/A	N/A	DUF551
COG	UHGV-0069488_19	COG0745	N/A	N/A	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	N/A
KOfam	UHGV-0069488_22	K01160	57.5	3.9e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0069488_22	phrog_140	128.4	4e-38	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0069488_22	UniRef90_A0A0L0WED4	129.0	8.82e-36	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0069488_22	1123263.AUKY01000072_gene2102	122.0	1.03e-33	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0069488_22	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0069488_22	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0069488_22	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0069488_24	phrog_2514	92.1	6.4e-27	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0069488_24	428127.EUBDOL_01512	110.0	2.72e-26	DnaD domain protein	N/A
COG	UHGV-0069488_24	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0069488_24	PF12793,NF033788,COG0640	N/A	N/A	N/A	N/A
KOfam	UHGV-0069488_25	K03111	146.1	3.60134e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0069488_25	phrog_44	148.3	4.34403e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0069488_25	UniRef90_R6JMM3	262.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0069488_25	718252.FP2_06770	160.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0069488_25	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0069488_25	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0069488_25	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0069488_25	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0069488_25	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0069488_26	phrog_7566	119.6	1e-35	N/A	unknown function
UniRef90	UHGV-0069488_26	UniRef90_A0A8D9UHC0	69.7	0.000000000000128	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-0069488_26	1007096.BAGW01000031_gene114	82.0	5.29e-19	N/A	N/A
PHROG	UHGV-0069488_27	phrog_72	75.9	5.3e-22	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0069488_27	UniRef90_UPI001F3F3E5C	112.0	2.02e-28	recombination protein NinB	N/A
eggNOG-mapper	UHGV-0069488_27	445972.ANACOL_01825	97.4	3.69e-23	N/A	N/A
structural_annotation	UHGV-0069488_27	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0069488_28	phrog_14970	229.7	0	N/A	unknown function
UniRef90	UHGV-0069488_28	UniRef90_UPI00164BFA28	201.0	0	Rad52/Rad22 family DNA repair protein	N/A
eggNOG-mapper	UHGV-0069488_28	411468.CLOSCI_00315	176.0	0	double-strand break repair protein	N/A
Pfam	UHGV-0069488_28	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-0069488_28	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0069488_28	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0069488_29	phrog_253	129.6	2.1e-38	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0069488_29	UniRef90_R6J0Q7	290.0	0	N/A	N/A
eggNOG-mapper	UHGV-0069488_29	1227360.C176_12583	87.0	1.69e-19	Siphovirus Gp157	N/A
Pfam	UHGV-0069488_29	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0069488_29	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-0069488_33	phrog_33952	200.8	0	N/A	unknown function
PHROG	UHGV-0069488_34	phrog_26314	119.2	1e-35	N/A	unknown function
KOfam	UHGV-0069488_35	K22300	48.7	0.00000000000017	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0069488_35	phrog_3	51.2	0.000000000000059	transcriptional repressor	transcription regulation
UniRef90	UHGV-0069488_35	UniRef90_UPI001F201451	78.2	1.66e-17	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0069488_35	1321782.HMPREF1986_02244	62.8	0.00000000000405	Helix-turn-helix domain	N/A
Pfam	UHGV-0069488_35	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0069488_35	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0069488_35	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0069488_36	K01356	103.7	3.1e-30	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0069488_36	phrog_4	119.2	4.4e-35	transcriptional repressor	transcription regulation
UniRef90	UHGV-0069488_36	UniRef90_A0A6N9NXR9	246.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0069488_36	938278.CAJO01000051_gene819	111.0	1.46e-27	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0069488_36	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0069488_36	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0069488_36	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0069488_36	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
KOfam	UHGV-0069488_40	K06400	194.3	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0069488_40	phrog_95	186.4	0	integrase	integration and excision
UniRef90	UHGV-0069488_40	UniRef90_A0A843H3J5	216.0	0	Recombinase family protein (Fragment)	N/A
eggNOG-mapper	UHGV-0069488_40	1105031.HMPREF1141_2502	236.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0069488_40	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0069488_40	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-0069488_40	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0069488	Yes	28,778	50	73	1
UHGV-1405905	No	28,778	50	73	1