vOTU vOTU-136973

vOTU: vOTU-136973

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-136973
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00008 → vOTU-136973
Host lineage
Host range breadth
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0058829
Biosample ID	SAMEA2160616
Genome length (bp)	45,771 bps
CheckV completeness	68.19% (Medium-quality)
CDS count	72
CDS density	91.03%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method
CRISPR-predicted host lineage	Total connections	Host agreement
PHIST-predicted host lineage	Total connections	Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 68.19)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0058829_1	K01534	839.6	0	zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]	N/A
PHROG	UHGV-0058829_1	phrog_12316	252.4	0	ATPase	other
UniRef90	UHGV-0058829_1	UniRef90_A0A316S957	1310.0	0	Cadmium-translocating P-type ATPase	N/A
eggNOG-mapper	UHGV-0058829_1	1262915.BN574_01152	1327.0	0	cadmium-exporting ATPase	N/A
Pfam	UHGV-0058829_1	PF00403	N/A	N/A	Heavy-metal-associated domain	HMA
Pfam	UHGV-0058829_1	PF00122	N/A	N/A	E1-E2 ATPase	E1-E2_ATPase
Pfam	UHGV-0058829_1	PF00702	N/A	N/A	haloacid dehalogenase-like hydrolase	Hydrolase
NCBIFam	UHGV-0058829_1	TIGR01525.1	N/A	N/A	heavy metal translocating P-type ATPase	N/A
COG	UHGV-0058829_1	COG2217	N/A	N/A	Cation-transporting P-type ATPase	N/A
KOfam	UHGV-0058829_2	K14059	254.1	0	int; integrase	N/A
PHROG	UHGV-0058829_2	phrog_1	203.5	0	integrase	integration and excision
UniRef90	UHGV-0058829_2	UniRef90_R6IK00	323.0	0	Integrase family protein	N/A
eggNOG-mapper	UHGV-0058829_2	1262914.BN533_00811	323.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0058829_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0058829_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0058829_2	PF00589,PF14659,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0058829_5	phrog_87	60.3	2.4e-17	metallo-protease	other
UniRef90	UHGV-0058829_5	UniRef90_UPI001032CAF7	197.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0058829_5	679201.HMPREF9334_00293	128.0	1.48e-36	IrrE N-terminal-like domain	N/A
Pfam	UHGV-0058829_5	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0058829_5	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0058829_5	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0058829_6	K22299	48.4	0.00000000000021	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0058829_6	phrog_8	69.1	8.8e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0058829_6	UniRef90_A0A1V4GF99	104.0	4.34e-26	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0058829_6	742740.HMPREF9474_03481	81.6	1.08e-17	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0058829_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0058829_6	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
PHROG	UHGV-0058829_7	phrog_8	52.6	0.000000000000013	transcriptional regulator	transcription regulation
UniRef90	UHGV-0058829_7	UniRef90_UPI001105E3A0	89.4	3.58e-22	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0058829_7	1304866.K413DRAFT_0834	80.1	9.26e-19	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-0058829_7	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0058829_7	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0058829_7	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
Pfam	UHGV-0058829_9	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0058829_9	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
structural_annotation	UHGV-0058829_9	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
Pfam	UHGV-0058829_10	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0058829_10	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0058829_10	MF_02014,NF010723,COG1388	N/A	N/A	N/A	N/A
PHROG	UHGV-0058829_13	phrog_434	269.2	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0058829_13	UniRef90_UPI001CD20A9A	320.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-0058829_13	706434.HMPREF9429_00551	239.0	0	YqaJ viral recombinase family protein	N/A
Pfam	UHGV-0058829_13	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0058829_13	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0058829_13	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0058829_13	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-0058829_14	K07455	210.2	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0058829_14	phrog_148	206.8	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0058829_14	UniRef90_R6XVK6	238.0	0	Putative phage RecT family protein	N/A
eggNOG-mapper	UHGV-0058829_14	218284.CCDN010000001_gene901	225.0	0	RecT family	N/A
Pfam	UHGV-0058829_14	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0058829_14	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0058829_14	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0058829_14	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0058829_16	phrog_13246	80.3	2e-23	replisome organizer	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0058829_16	1196322.A370_04074	85.5	2.02e-16	DnaD domain protein	N/A
COG	UHGV-0058829_16	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0058829_16	PF12793,NF033788,COG0640	N/A	N/A	N/A	N/A
PHROG	UHGV-0058829_17	phrog_9804	68.0	1.3e-19	N/A	unknown function
eggNOG-mapper	UHGV-0058829_17	1280706.AUJE01000046_gene1152	75.9	0.0000000000000599	N/A	N/A
UniRef90	UHGV-0058829_19	UniRef90_UPI0010329B00	89.4	1.71e-20	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-0058829_19	PF13384	N/A	N/A	N/A	N/A
PHROG	UHGV-0058829_28	phrog_10714	43.3	0.0000000000063	N/A	unknown function
structural_annotation	UHGV-0058829_28	PF21173	N/A	N/A	N/A	N/A
PHROG	UHGV-0058829_30	phrog_599	46.3	0.00000000000092	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0058829_30	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0058829_30	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0058829_30	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
KOfam	UHGV-0058829_31	K01520	113.9	1.6e-33	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0058829_31	phrog_135	114.1	7.6e-34	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0058829_31	UniRef90_A0A847N878	122.0	9.53e-29	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0058829_31	1000569.HMPREF1040_0802	147.0	4.77997e-41	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	N/A
Pfam	UHGV-0058829_31	PF00692	N/A	N/A	dUTPase	dUTPase
COG	UHGV-0058829_31	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
KOfam	UHGV-0058829_33	K01160	43.9	0.0000000000058	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0058829_33	phrog_140	97.3	1.5e-28	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0058829_33	UniRef90_A0A316S9J1	98.2	4.21e-23	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0058829_33	1150626.PHAMO_180112	67.8	0.00000000000396	Holliday junction resolvase	N/A
Pfam	UHGV-0058829_33	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0058829_33	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0058829_33	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
UniRef90	UHGV-0058829_34	UniRef90_A0A1Q6R577	122.0	1.2e-31	N/A	N/A
PHROG	UHGV-0058829_37	phrog_1689	70.4	3.4e-20	nucleotide kinase	other
eggNOG-mapper	UHGV-0058829_37	411473.RUMCAL_00920	76.6	5.66e-16	N/A	N/A
Pfam	UHGV-0058829_37	PF11753	N/A	N/A	N/A	DUF3310
KOfam	UHGV-0058829_38	K03111	120.8	2.1e-35	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0058829_38	phrog_44	122.7	3.3e-36	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0058829_38	UniRef90_A0A644SYF3	119.0	3.81e-32	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0058829_38	484770.UFO1_4529	115.0	1.57e-31	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0058829_38	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0058829_38	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0058829_38	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0058829_38	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0058829_38	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
Pfam	UHGV-0058829_40	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0058829_40	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
UniRef90	UHGV-0058829_41	UniRef90_A1HR45	89.0	2.68e-19	Prophage LambdaCh01, phage transcriptional regulator, RinA family	N/A
eggNOG-mapper	UHGV-0058829_41	401526.TcarDRAFT_1279	89.0	4.49e-20	phage transcriptional regulator, RinA family	N/A
structural_annotation	UHGV-0058829_41	PF05263,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
COG	UHGV-0058829_42	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
UniRef90	UHGV-0058829_45	UniRef90_UPI000B4C39FC	63.5	0.0000000000561	type I restriction endonuclease subunit M	N/A
eggNOG-mapper	UHGV-0058829_45	443144.GM21_0785	62.0	0.0000000000284	N/A	N/A
eggNOG-mapper	UHGV-0058829_48	1203606.HMPREF1526_00222	92.4	3.71e-22	N/A	N/A
UniRef90	UHGV-0058829_52	UniRef90_A0A523RS96	75.1	0.0000000000049	Glutamine amidotransferase type-2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0058829_52	1401067.HMPREF0872_03875	144.0	2.09e-38	N/A	N/A
structural_annotation	UHGV-0058829_52	MF_01931,TIGR01134,COG0034	N/A	N/A	N/A	N/A
PHROG	UHGV-0058829_53	phrog_16683	151.3	8.40779e-45	N/A	unknown function
UniRef90	UHGV-0058829_53	UniRef90_UPI0002E9775B	157.0	2.64e-40	amidoligase family protein	N/A
eggNOG-mapper	UHGV-0058829_53	1007096.BAGW01000006_gene1758	157.0	4.41998e-41	Putative amidoligase enzyme	N/A
Pfam	UHGV-0058829_53	PF12224	N/A	N/A	Putative amidoligase enzyme	Amidoligase_2
structural_annotation	UHGV-0058829_53	PF12224,PF15591,MF_01609,NF010044,COG2170,COG2139	N/A	N/A	N/A	N/A
PHROG	UHGV-0058829_56	phrog_606	64.1	2.2e-18	terminase small subunit	head and packaging
eggNOG-mapper	UHGV-0058829_56	485915.Dret_1613	68.6	0.00000000000462	DNA-packaging protein gp3	N/A
Pfam	UHGV-0058829_56	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
KOfam	UHGV-0058829_57	K06909	85.5	8.3e-25	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0058829_57	phrog_2	164.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0058829_57	UniRef90_UPI001D00EC11	560.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0058829_57	1401067.HMPREF0872_06820	518.0	0	Terminase-like family	N/A
Pfam	UHGV-0058829_57	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0058829_57	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0058829_57	PF03237,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0058829_58	PF21621,MF_01255,NF009806,COG4766	N/A	N/A	N/A	N/A
PHROG	UHGV-0058829_59	phrog_1216	313.1	0	portal protein	head and packaging
UniRef90	UHGV-0058829_59	UniRef90_A0A0U1L376	506.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0058829_59	1485543.JMME01000020_gene791	583.0	0	Membrane	N/A
COG	UHGV-0058829_59	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0058829_59	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0058829_61	1232428.CAVO010000067_gene424	126.0	5.61e-30	N/A	N/A
PHROG	UHGV-0058829_62	phrog_1328	135.0	2.4e-40	major head protein	head and packaging
UniRef90	UHGV-0058829_62	UniRef90_UPI000413677B	362.0	0	N/A	N/A
eggNOG-mapper	UHGV-0058829_62	1232428.CAVO010000067_gene423	362.0	0	N/A	N/A
Pfam	UHGV-0058829_62	PF17236	N/A	N/A	N/A	DUF5309
structural_annotation	UHGV-0058829_62	PF17236,MF_04133,NF033394,COG4834	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0058829_64	PF20387	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0058829_65	1485543.JMME01000020_gene785	138.0	9.81e-40	N/A	N/A
structural_annotation	UHGV-0058829_65	PF20387	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0058829_66	1232428.CAVO010000067_gene421	384.0	0	cellulase activity	N/A
COG	UHGV-0058829_66	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
structural_annotation	UHGV-0058829_66	PF18001,PF01828,PF16389,MF_01905,NF010681,COG3401,COG3506	N/A	N/A	N/A	N/A
PHROG	UHGV-0058829_67	phrog_5417	93.1	2.4e-27	N/A	unknown function
UniRef90	UHGV-0058829_67	UniRef90_H8FY63	172.0	0	Putative BcepGomrgp18	N/A
eggNOG-mapper	UHGV-0058829_67	1459636.NTE_01434	73.2	0.0000000000000527	N/A	N/A
structural_annotation	UHGV-0058829_67	PF12571	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0058829_68	1150626.PHAMO_80093	159.0	6.09004e-41	extracellular polysaccharide biosynthetic process	N/A
COG	UHGV-0058829_68	COG3206	N/A	N/A	Exopolysaccharide export protein/domain GumC/Wzc1	N/A
structural_annotation	UHGV-0058829_68	PF05660,NF012201	N/A	N/A	N/A	N/A
PHROG	UHGV-0058829_69	phrog_6465	78.5	1e-22	tail protein	tail
UniRef90	UHGV-0058829_69	UniRef90_K4F7V9	83.6	0.000000000000005	Putative structural protein	N/A
eggNOG-mapper	UHGV-0058829_69	1042156.CXIVA_07170	99.0	1.82e-20	tail collar domain protein	N/A
COG	UHGV-0058829_69	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-0058829_72	phrog_6465	97.9	1.2e-28	tail protein	tail
UniRef90	UHGV-0058829_72	UniRef90_UPI00195A57DE	133.0	3.2e-32	phage tail protein	N/A
eggNOG-mapper	UHGV-0058829_72	500635.MITSMUL_03163	103.0	9.86e-22	Membrane	N/A
COG	UHGV-0058829_72	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0058829	Yes	45,771	44	68	1