vOTU vOTU-137222

vOTU: vOTU-137222

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-137222
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Peptostreptococcales → Peptostreptococcaceae → Romboutsia → Romboutsia timonensis
Taxonomy (UHGV)	vFAM-00026 → vSUBFAM-01032 → vOTU-137222
Host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0027773
Biosample ID	SAMEA4766094
Genome length (bp)	30,484 bps
CheckV completeness	79.24% (Medium-quality)
CDS count	45
CDS density	93.68%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium	Total connections	16	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Peptostreptococcales → Peptostreptococcaceae → Romboutsia → Romboutsia timonensis	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 79.24)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0027773_4	phrog_11032	99.1	2.8e-29	tail protein	tail
eggNOG-mapper	UHGV-0027773_4	279006.D9I6I2_9CAUD	82.8	0.0000000000000196	virus tail, fiber	N/A
Pfam	UHGV-0027773_4	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-0027773_4	PF02002,TIGR04176	N/A	N/A	N/A	N/A
PHROG	UHGV-0027773_6	phrog_16573	50.9	0.000000000000011	N/A	unknown function
UniRef90	UHGV-0027773_6	UniRef90_A0A120MKD8	73.9	0.0000000000782	BppU_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0027773_6	1321778.HMPREF1982_03560	108.0	8.28e-23	N/A	N/A
Pfam	UHGV-0027773_6	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
COG	UHGV-0027773_6	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
PHROG	UHGV-0027773_7	phrog_1067	299.0	0	minor head protein	head and packaging
UniRef90	UHGV-0027773_7	UniRef90_A0A0E1KW44	374.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0027773_7	1567011.A0A0A7RUI9_9VIRU	263.0	0	N-acetylmuramoyl-L-alanine amidase activity	N/A
Pfam	UHGV-0027773_7	PF18994	N/A	N/A	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
Pfam	UHGV-0027773_7	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0027773_7	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
structural_annotation	UHGV-0027773_7	PF14594,TIGR01665,NF041249,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0027773_8	phrog_33	91.9	1.2e-26	distal tail protein Dit	tail
UniRef90	UHGV-0027773_8	UniRef90_A0A0E1KYU8	187.0	0	Phage tail family protein	N/A
eggNOG-mapper	UHGV-0027773_8	1567011.A0A0A7RWN1_9VIRU	176.0	0	Phage tail protein	N/A
Pfam	UHGV-0027773_8	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0027773_8	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
structural_annotation	UHGV-0027773_8	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0027773_9	K20478	59.1	1.9e-18	GOLGB1; golgin subfamily B member 1	N/A
PHROG	UHGV-0027773_9	phrog_1533	708.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0027773_9	UniRef90_UPI0018AC3B12	753.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0027773_9	632245.CLP_1658	427.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0027773_9	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0027773_9	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0027773_9	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0027773_9	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0027773_10	536233.CLO_1369	73.9	0.00000000000000177	N/A	N/A
structural_annotation	UHGV-0027773_10	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0027773_11	phrog_88	106.4	2e-31	major tail protein	tail
UniRef90	UHGV-0027773_11	UniRef90_UPI001F22BC6F	139.0	2.55e-37	phage tail protein	N/A
eggNOG-mapper	UHGV-0027773_11	1111121.HMPREF1247_0016	75.9	0.000000000000028	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0027773_11	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0027773_11	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0027773_12	phrog_78	44.1	0.0000000000039	tail terminator	connector
eggNOG-mapper	UHGV-0027773_12	536233.CLO_1367	100.0	2.88e-26	N/A	N/A
structural_annotation	UHGV-0027773_12	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0027773_13	phrog_5	41.1	0.000000000037	tail completion or Neck1 protein	connector
eggNOG-mapper	UHGV-0027773_13	632245.CLP_2691	77.0	4.48e-16	N/A	N/A
structural_annotation	UHGV-0027773_13	TIGR01725	N/A	N/A	N/A	N/A
UniRef90	UHGV-0027773_14	UniRef90_A0A1I7G2Z2	80.5	2.62e-17	Head-tail adaptor	N/A
eggNOG-mapper	UHGV-0027773_14	632245.CLP_2692	63.5	0.0000000000184	Phage head-tail joining protein	N/A
Pfam	UHGV-0027773_14	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
structural_annotation	UHGV-0027773_14	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0027773_15	phrog_40	41.5	0.000000000019	head-tail adaptor Ad1	connector
UniRef90	UHGV-0027773_15	UniRef90_A0A416J1B1	90.9	6.39e-22	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0027773_15	1414720.CBYM010000002_gene570	73.6	7.44e-16	Phage gp6-like head-tail connector protein	N/A
NCBIFam	UHGV-0027773_15	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0027773_15	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0027773_16	phrog_10	186.5	0	major head protein	head and packaging
UniRef90	UHGV-0027773_16	UniRef90_K6D6D8	348.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0027773_16	1414720.CBYM010000001_gene699	303.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0027773_16	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0027773_16	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0027773_16	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0027773_16	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0027773_17	phrog_918	123.0	8.4e-37	N/A	unknown function
UniRef90	UHGV-0027773_17	UniRef90_UPI00096A904F	171.0	0	N/A	N/A
eggNOG-mapper	UHGV-0027773_17	1499683.CCFF01000014_gene3910	174.0	0	N/A	N/A
Pfam	UHGV-0027773_17	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0027773_17	PF19791	N/A	N/A	N/A	N/A
KOfam	UHGV-0027773_18	K06904	98.1	1.3e-28	N/A	N/A
PHROG	UHGV-0027773_18	phrog_80	127.3	1.8e-37	head maturation protease	head and packaging
UniRef90	UHGV-0027773_18	UniRef90_UPI0009BAF53E	197.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0027773_18	1196031.ALEG01000039_gene1815	185.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0027773_18	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0027773_18	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0027773_18	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0027773_18	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0027773_19	phrog_12	234.3	0	portal protein	head and packaging
UniRef90	UHGV-0027773_19	UniRef90_UPI0018E4C584	341.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0027773_19	1285586.H131_21312	324.0	0	Portal protein	N/A
Pfam	UHGV-0027773_19	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0027773_19	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0027773_19	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0027773_19	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0027773_20	phrog_9	249.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0027773_20	UniRef90_K6DIF2	687.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0027773_20	1196031.ALEG01000039_gene1812	660.0	0	Terminase	N/A
Pfam	UHGV-0027773_20	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0027773_20	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0027773_20	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0027773_20	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0027773_21	phrog_83	79.3	5.8e-23	terminase small subunit	head and packaging
UniRef90	UHGV-0027773_21	UniRef90_A0A846JAK2	138.0	7.85e-39	Phage terminase small subunit P27 family	N/A
eggNOG-mapper	UHGV-0027773_21	1196031.ALEG01000039_gene1811	132.0	5.06e-37	Phage terminase, small subunit	N/A
Pfam	UHGV-0027773_21	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
NCBIFam	UHGV-0027773_21	TIGR01558.1	N/A	N/A	phage terminase small subunit P27 family	N/A
COG	UHGV-0027773_21	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0027773_21	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0027773_22	phrog_144	64.5	2e-18	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0027773_22	UniRef90_C3WAW7	83.6	7.13e-18	HNH endonuclease domain family protein	N/A
eggNOG-mapper	UHGV-0027773_22	632245.CLP_2922	110.0	4.33e-29	N/A	N/A
UniRef90	UHGV-0027773_23	UniRef90_A0A1C6JMI4	165.0	0	Alternative sigma factor RpoH	N/A
eggNOG-mapper	UHGV-0027773_23	1414720.CBYM010000002_gene578	165.0	0	N/A	N/A
structural_annotation	UHGV-0027773_23	PF04545,MF_00683,NF008895	N/A	N/A	N/A	N/A
KOfam	UHGV-0027773_25	K01160	45.9	0.0000000000014	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0027773_25	phrog_140	125.0	4.8e-37	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0027773_25	UniRef90_A0A1C6K6Q7	216.0	0	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0027773_25	1499683.CCFF01000014_gene3920	206.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0027773_25	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0027773_25	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0027773_25	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0027773_26	phrog_1389	48.3	0.00000000000017	N/A	unknown function
eggNOG-mapper	UHGV-0027773_26	1033737.CAEV01000076_gene535	53.1	0.000000221	N/A	N/A
structural_annotation	UHGV-0027773_26	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
PHROG	UHGV-0027773_27	phrog_2205	123.6	1.1e-36	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0027773_27	UniRef90_A0A4U9RDS0	156.0	1.4013e-45	N/A	N/A
eggNOG-mapper	UHGV-0027773_27	1415774.U728_1122	151.0	2.52234e-44	Bacteriophage Mu Gam like protein	N/A
Pfam	UHGV-0027773_27	PF07352	N/A	N/A	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
structural_annotation	UHGV-0027773_27	PF07352	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0027773_28	PF19849	N/A	N/A	N/A	N/A
PHROG	UHGV-0027773_29	phrog_14970	279.5	0	N/A	unknown function
UniRef90	UHGV-0027773_29	UniRef90_UPI00123F00F5	217.0	0	Rad52/Rad22 family DNA repair protein	N/A
eggNOG-mapper	UHGV-0027773_29	411470.RUMGNA_02193	198.0	0	double-strand break repair protein	N/A
Pfam	UHGV-0027773_29	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-0027773_29	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0027773_29	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0027773_31	phrog_14313	124.2	6.7e-37	N/A	unknown function
eggNOG-mapper	UHGV-0027773_31	1284352.AOIG01000022_gene3779	83.2	4.8e-18	N/A	N/A
structural_annotation	UHGV-0027773_35	PF13719	N/A	N/A	N/A	N/A
PHROG	UHGV-0027773_36	phrog_30408	75.8	6.8e-22	N/A	unknown function
UniRef90	UHGV-0027773_36	UniRef90_UPI00082E8B56	210.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0027773_36	1395513.P343_12785	98.6	3.47e-21	Helix-turn-helix domain	N/A
Pfam	UHGV-0027773_36	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0027773_36	COG0640	N/A	N/A	DNA-binding transcriptional regulator, ArsR family	N/A
structural_annotation	UHGV-0027773_36	PF02002,MF_01909,TIGR04176,COG5529	N/A	N/A	N/A	N/A
KOfam	UHGV-0027773_40	K07741	95.8	1.1e-27	antB; anti-repressor protein	N/A
PHROG	UHGV-0027773_40	phrog_130	220.4	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0027773_40	UniRef90_UPI0018A9A0C6	404.0	0	phage antirepressor	N/A
eggNOG-mapper	UHGV-0027773_40	536233.CLO_0955	261.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0027773_40	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0027773_40	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0027773_40	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0027773_40	PF03374,PF02498,TIGR02681,COG3645	N/A	N/A	N/A	N/A
UniRef90	UHGV-0027773_41	UniRef90_A0A6B4RLC1	106.0	1.08e-28	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0027773_41	1292035.H476_1036	79.7	5.41e-19	N/A	N/A
structural_annotation	UHGV-0027773_41	PF05339,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0027773_42	K22300	69.6	6.2e-20	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0027773_42	phrog_8	58.9	1.2e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0027773_42	UniRef90_UPI001A9B6B12	191.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0027773_42	632245.CLP_2722	131.0	9.83e-37	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0027773_42	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0027773_42	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0027773_42	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0027773_43	phrog_87	85.1	5.8e-25	metallo-protease	other
UniRef90	UHGV-0027773_43	UniRef90_UPI001F15A929	201.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0027773_43	1567012.A0A0A7RTF0_9VIRU	192.0	0	Pfam:Peptidase_M78	N/A
Pfam	UHGV-0027773_43	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
structural_annotation	UHGV-0027773_43	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0027773_44	K06400	315.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0027773_44	phrog_95	334.0	0	integrase	integration and excision
UniRef90	UHGV-0027773_44	UniRef90_A0A8I0A712	830.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0027773_44	1151292.QEW_0309	374.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0027773_44	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0027773_44	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0027773_44	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0027773_44	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0027773_44	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0027773	Yes	30,484	30	79	1