vOTU vOTU-137229

vOTU: vOTU-137229

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-137229
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00840 → vGENUS-00721 → vOTU-137229
Host lineage
Host range breadth
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0205017
Biosample ID	SAMN00069455
Genome length (bp)	23,890 bps
CheckV completeness	72.10% (Medium-quality)
CDS count	36
CDS density	95.85%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method
CRISPR-predicted host lineage	Total connections	Host agreement
PHIST-predicted host lineage	Total connections	Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 72.1)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0205017_2	phrog_9	257.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0205017_2	UniRef90_A0A3D1VAR5	751.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0205017_2	1226322.HMPREF1545_00113	694.0	0	Phage Terminase	N/A
Pfam	UHGV-0205017_2	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
Pfam	UHGV-0205017_2	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0205017_2	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0205017_2	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0205017_2	PF03354,PF20441,PF05119,MF_04146,TIGR01547,TIGR01558,COG4626,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0205017_3	phrog_12	183.5	0	portal protein	head and packaging
UniRef90	UHGV-0205017_3	UniRef90_U2SKC6	575.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0205017_3	1226322.HMPREF1545_00114	575.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0205017_3	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0205017_3	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0205017_3	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0205017_3	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0205017_4	K06904	151.1	8.40779e-45	N/A	N/A
PHROG	UHGV-0205017_4	phrog_80	179.6	0	head maturation protease	head and packaging
UniRef90	UHGV-0205017_4	UniRef90_A0A1F2PDD9	244.0	0	Caudovirus prohead protease	N/A
eggNOG-mapper	UHGV-0205017_4	398512.JQKC01000009_gene450	225.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0205017_4	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0205017_4	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0205017_4	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0205017_4	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0205017_5	phrog_10	210.2	0	major head protein	head and packaging
UniRef90	UHGV-0205017_5	UniRef90_A0A1C6H720	691.0	0	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
eggNOG-mapper	UHGV-0205017_5	1226322.HMPREF1545_00116	650.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0205017_5	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0205017_5	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0205017_5	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0205017_5	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0205017_6	phrog_2550	56.8	2.5e-16	N/A	unknown function
UniRef90	UHGV-0205017_6	UniRef90_R5V091	83.2	8.62e-19	Phage related protein	N/A
eggNOG-mapper	UHGV-0205017_6	1226322.HMPREF1545_00117	91.3	9.37e-23	N/A	N/A
structural_annotation	UHGV-0205017_6	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0205017_7	phrog_19734	52.8	0.0000000000000076	N/A	unknown function
eggNOG-mapper	UHGV-0205017_7	33035.JPJF01000039_gene275	50.4	0.00000251	N/A	N/A
structural_annotation	UHGV-0205017_7	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0205017_8	phrog_78	42.1	0.000000000015	tail terminator	connector
eggNOG-mapper	UHGV-0205017_8	908340.HMPREF9406_2574	74.7	4.59e-16	N/A	N/A
structural_annotation	UHGV-0205017_8	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0205017_9	phrog_5	50.0	0.000000000000058	tail completion or Neck1 protein	connector
UniRef90	UHGV-0205017_9	UniRef90_A0A1C6FG30	149.0	3.82554e-43	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0205017_9	908340.HMPREF9406_2573	141.0	8.14e-41	N/A	N/A
NCBIFam	UHGV-0205017_9	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0205017_9	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0205017_10	phrog_88	106.4	1.6e-31	major tail protein	tail
UniRef90	UHGV-0205017_10	UniRef90_UPI0018771F27	289.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0205017_10	33035.JPJF01000039_gene278	127.0	3.07e-34	N/A	N/A
NCBIFam	UHGV-0205017_10	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0205017_10	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0205017_11	phrog_2115	44.4	0.0000000000032	tail protein	tail
eggNOG-mapper	UHGV-0205017_11	191610.CATYP_01040	53.5	0.000000302	N/A	N/A
structural_annotation	UHGV-0205017_11	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0205017_13	phrog_6900	263.0	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0205017_13	411470.RUMGNA_02076	285.0	0	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-0205017_13	COG5283	N/A	N/A	Phage-related tail protein	N/A
eggNOG-mapper	UHGV-0205017_14	1235797.C816_02660	107.0	3.35e-28	N/A	N/A
structural_annotation	UHGV-0205017_14	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0205017_15	phrog_13879	541.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0205017_15	1235797.C816_02659	703.0	0	N/A	N/A
structural_annotation	UHGV-0205017_15	PF14594,PF06588,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0205017_16	phrog_18725	106.0	2e-31	N/A	unknown function
eggNOG-mapper	UHGV-0205017_16	693746.OBV_18220	144.0	7.19987e-42	N/A	N/A
UniRef90	UHGV-0205017_17	UniRef90_A0A096B066	146.0	1.11e-36	Mtd_N domain-containing protein	N/A
PHROG	UHGV-0205017_18	phrog_22773	40.6	0.000000000039	N/A	unknown function
eggNOG-mapper	UHGV-0205017_18	657322.FPR_21910	51.2	0.00000233	N/A	N/A
UniRef90	UHGV-0205017_19	UniRef90_A0A1Y3Z0U4	55.5	0.00000000185	XkdX family protein (Fragment)	N/A
structural_annotation	UHGV-0205017_19	PF09693,TIGR01669	N/A	N/A	N/A	N/A
PHROG	UHGV-0205017_20	phrog_4105	73.8	2.1e-21	N/A	unknown function
eggNOG-mapper	UHGV-0205017_20	1321782.HMPREF1986_02281	55.5	0.0000000235	N/A	N/A
PHROG	UHGV-0205017_22	phrog_1129	69.9	2.5e-20	holin	lysis
UniRef90	UHGV-0205017_22	UniRef90_UPI001EDED0D7	123.0	6.56e-35	phage holin family protein	N/A
eggNOG-mapper	UHGV-0205017_22	693746.OBV_13280	122.0	3.44e-35	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0205017_22	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0205017_22	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-0205017_23	K01448	126.8	2.2e-37	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0205017_23	phrog_435	128.7	4.7e-38	endolysin	lysis
UniRef90	UHGV-0205017_23	UniRef90_A0A329MTH0	88.6	0.00000000000000113	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0205017_23	66692.ABC2815	115.0	1.57e-25	Ami_3	N/A
Pfam	UHGV-0205017_23	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0205017_23	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
Pfam	UHGV-0205017_23	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0205017_23	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0205017_23	PF01520,PF09992,PF01471,MF_00562,TIGR02883,COG0860,COG4632,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0205017_24	phrog_25567	57.1	2.4e-16	N/A	unknown function
UniRef90	UHGV-0205017_24	UniRef90_UPI00164AED9E	121.0	1.32e-33	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0205017_24	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0205017_24	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0205017_24	NF040522,COG2944	N/A	N/A	N/A	N/A
KOfam	UHGV-0205017_26	K14059	181.7	0	int; integrase	N/A
PHROG	UHGV-0205017_26	phrog_1	168.6	0	integrase	integration and excision
UniRef90	UHGV-0205017_26	UniRef90_A0A174HFN7	365.0	0	Site-specific tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-0205017_26	1226322.HMPREF1545_00144	202.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0205017_26	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0205017_26	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0205017_26	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0205017_27	UniRef90_A0A6J6I5H7	73.9	2.05e-16	Unannotated protein	N/A
eggNOG-mapper	UHGV-0205017_27	483216.BACEGG_01163	56.6	0.000000000223	N/A	N/A
UniRef90	UHGV-0205017_28	UniRef90_UPI001956EF77	152.0	1.54143e-44	stalk domain-containing protein	N/A
eggNOG-mapper	UHGV-0205017_28	509191.AEDB02000084_gene5185	71.2	0.00000000000185	Right handed beta helix region	N/A
Pfam	UHGV-0205017_28	PF07833	N/A	N/A	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
COG	UHGV-0205017_28	COG0760	N/A	N/A	Peptidyl-prolyl isomerase, parvulin family	N/A
structural_annotation	UHGV-0205017_29	PF12844,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0205017_31	PF09202,MF_01819,NF002926,COG3432	N/A	N/A	N/A	N/A
KOfam	UHGV-0205017_33	K22300	65.3	1.2e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0205017_33	phrog_8	57.6	3.3e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0205017_33	UniRef90_A0A1Y3ZNM0	84.7	2.55e-20	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0205017_33	693746.OBV_25500	80.9	1.51e-19	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0205017_33	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0205017_33	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0205017_33	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0205017_34	PF13560,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0205017_36	phrog_4433	195.6	0	N/A	unknown function
UniRef90	UHGV-0205017_36	UniRef90_UPI00045B9709	100.0	1.31e-23	collagen-like protein	N/A
eggNOG-mapper	UHGV-0205017_36	439375.Oant_2324	107.0	2.25e-25	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0205017_36	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0205017	Yes	23,890	60	72	1