vOTU vOTU-137267

vOTU: vOTU-137267

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-137267
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans
Taxonomy (UHGV)	vFAM-00060 → vSUBFAM-02264 → vGENUS-02676 → vOTU-137267
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans
Host range breadth	Species
Lifestyle	temperate (Evidence: geNomad)

Representative genome
Genome ID	UHGV-0044145
Biosample ID	N/A
Genome length (bp)	19,813 bps
CheckV completeness	52.70% (Medium-quality)
CDS count	32
CDS density	95.47%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans	Total connections	1	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans	Total connections	1045	Host agreement	97.03

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 52.7)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0044145_1	phrog_581	326.3	0	minor head protein	head and packaging
UniRef90	UHGV-0044145_1	UniRef90_W0U9J3	1078.0	0	Phage minor capsid protein (Glycoside Hydrolase Family 25 protein )	N/A
eggNOG-mapper	UHGV-0044145_1	1160721.RBI_II00541	1078.0	0	N/A	N/A
Pfam	UHGV-0044145_1	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0044145_1	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0044145_1	PF06152,PF12636	N/A	N/A	N/A	N/A
PHROG	UHGV-0044145_4	phrog_194	105.3	6.7e-31	head scaffolding protein	head and packaging
UniRef90	UHGV-0044145_4	UniRef90_W0U9H1	328.0	0	Phage minor structural protein	N/A
eggNOG-mapper	UHGV-0044145_4	1408437.JNJN01000045_gene593	83.2	2.27e-17	Phage minor structural protein GP20	N/A
Pfam	UHGV-0044145_4	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0044145_4	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0044145_5	phrog_422	242.7	0	major head protein	head and packaging
UniRef90	UHGV-0044145_5	UniRef90_W0U896	575.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0044145_5	1160721.RBI_II00538	575.0	0	N/A	N/A
structural_annotation	UHGV-0044145_5	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0044145_6	phrog_3281	40.2	0.000000000064	endonuclease VII	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0044145_6	UniRef90_W0U8Z9	151.0	0	Rho_N domain-containing protein	N/A
Pfam	UHGV-0044145_6	PF07498	N/A	N/A	Rho termination factor, N-terminal domain	Rho_N
PHROG	UHGV-0044145_7	phrog_541	65.0	1.1e-18	head-tail adaptor	connector
UniRef90	UHGV-0044145_7	UniRef90_A0A371AQT0	60.8	0.00000000111	N/A	N/A
Pfam	UHGV-0044145_8	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0044145_8	PF20536,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0044145_9	phrog_556	103.6	1.3e-30	minor head protein	head and packaging
UniRef90	UHGV-0044145_9	UniRef90_UPI000F52DD2A	217.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0044145_9	1160721.RBI_II00534	253.0	0	Minor capsid protein	N/A
Pfam	UHGV-0044145_9	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0044145_9	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0044145_10	phrog_3266	90.8	1.2e-26	tail completion	connector
eggNOG-mapper	UHGV-0044145_10	1160721.RBI_II00533	292.0	0	N/A	N/A
structural_annotation	UHGV-0044145_10	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0044145_11	phrog_3099	136.5	1.4e-40	N/A	unknown function
eggNOG-mapper	UHGV-0044145_11	1160721.RBI_II00532	340.0	0	N/A	N/A
structural_annotation	UHGV-0044145_11	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0044145_12	phrog_11299	84.4	1.1e-24	N/A	unknown function
eggNOG-mapper	UHGV-0044145_12	1160721.RBI_II00531	323.0	0	N/A	N/A
structural_annotation	UHGV-0044145_12	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0044145_13	phrog_706	120.0	2e-35	N/A	unknown function
UniRef90	UHGV-0044145_13	UniRef90_A0A2N0ULW2	215.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0044145_13	1160721.RBI_II00530	384.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0044145_13	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0044145_13	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0044145_14	phrog_2546	114.9	1.1e-34	N/A	unknown function
UniRef90	UHGV-0044145_14	UniRef90_A0A356CXM2	414.0	0	zinc_ribbon_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0044145_14	1160721.RBI_II00529	417.0	0	PFAM Tellurite resistance protein TerB	N/A
COG	UHGV-0044145_14	COG3793	N/A	N/A	Tellurite resistance protein TerB	N/A
structural_annotation	UHGV-0044145_14	PF13240	N/A	N/A	N/A	N/A
PHROG	UHGV-0044145_15	phrog_1535	490.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0044145_15	UniRef90_W0U887	1508.0	0	Putative minor tail protein	N/A
eggNOG-mapper	UHGV-0044145_15	1160721.RBI_II00528	1508.0	0	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-0044145_15	COG1006	N/A	N/A	Multisubunit Na+/H+ antiporter, MnhC subunit	N/A
structural_annotation	UHGV-0044145_15	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0044145_16	phrog_1194	75.6	6.1e-22	N/A	unknown function
eggNOG-mapper	UHGV-0044145_16	1160721.RBI_II00527	257.0	0	N/A	N/A
structural_annotation	UHGV-0044145_16	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0044145_17	phrog_6616	50.1	7.8e-24	tail protein	tail
eggNOG-mapper	UHGV-0044145_17	1160721.RBI_II00526	752.0	0	N/A	N/A
structural_annotation	UHGV-0044145_17	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0044145_21	phrog_13256	76.6	1.7e-22	N/A	unknown function
eggNOG-mapper	UHGV-0044145_21	1160721.RBI_II00522	127.0	6.58e-38	N/A	N/A
KOfam	UHGV-0044145_22	K07273	182.5	0	acm; lysozyme	N/A
PHROG	UHGV-0044145_22	phrog_291	148.2	6.44597e-44	endolysin	lysis
UniRef90	UHGV-0044145_22	UniRef90_W0U9I6	590.0	0	Endolysin (Glycoside Hydrolase Family 25 protein )	N/A
eggNOG-mapper	UHGV-0044145_22	1160721.RBI_II00521	590.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0044145_22	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0044145_22	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0044145_22	PF01183,PF01471,COG3757	N/A	N/A	N/A	N/A
KOfam	UHGV-0044145_24	K06223	227.1	0	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-0044145_24	phrog_56	211.2	0	DNA methyltransferase	other
UniRef90	UHGV-0044145_24	UniRef90_W0U9G5	505.0	0	Site-specific DNA-methyltransferase (adenine-specific)	N/A
eggNOG-mapper	UHGV-0044145_24	1160721.RBI_II00519	505.0	0	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-0044145_24	MTase_II_00039	140.1	3.20001e-41	Type II methyltransferase	RM
Pfam	UHGV-0044145_24	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
NCBIFam	UHGV-0044145_24	TIGR00571.1	N/A	N/A	Dam family site-specific DNA-(adenine-N6)-methyltransferase	N/A
COG	UHGV-0044145_24	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-0044145_24	PF02086,MF_00934,TIGR00571,COG0338	N/A	N/A	N/A	N/A
KOfam	UHGV-0044145_25	K07727	68.8	1.4e-19	K07727; putative transcriptional regulator	N/A
PHROG	UHGV-0044145_25	phrog_3	44.6	0.0000000000057	transcriptional repressor	transcription regulation
UniRef90	UHGV-0044145_25	UniRef90_W0U882	126.0	4.87e-37	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0044145_25	1160721.RBI_II00518	126.0	8.17e-38	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0044145_25	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0044145_25	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0044145_25	PF13443,NF000090,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0044145_26	1160721.RBI_I00641	338.0	0	N/A	N/A
eggNOG-mapper	UHGV-0044145_27	1160721.RBI_I00992	90.9	2.27e-22	N/A	N/A
eggNOG-mapper	UHGV-0044145_31	1160721.RBI_I00644	220.0	0	N/A	N/A
Pfam	UHGV-0044145_31	PF20194	N/A	N/A	N/A	DUF6557

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0044145	Yes	19,813	42	53	1