vOTU vOTU-137359

vOTU: vOTU-137359

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-137359
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00087 → vGENUS-03167 → vOTU-137359
Host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Coprobacillaceae → Erysipelatoclostridium → Erysipelatoclostridium ramosum
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0149683
Biosample ID	N/A
Genome length (bp)	34,112 bps
CheckV completeness	88.08% (Medium-quality)
CDS count	48
CDS density	92.98%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Coprobacillaceae → Erysipelatoclostridium → Erysipelatoclostridium ramosum	Total connections	7	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Coprobacillaceae → Erysipelatoclostridium → Erysipelatoclostridium ramosum	Total connections	121	Host agreement	95.87

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 88.08)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0149683_1	K16628	63.8	9.3e-19	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-0149683_1	phrog_819	432.4	0	tail protein	tail
UniRef90	UHGV-0149683_1	UniRef90_G9QXA6	1574.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0149683_1	445974.CLORAM_02919	1618.0	0	cellulase activity	N/A
Pfam	UHGV-0149683_1	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0149683_1	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
PHROG	UHGV-0149683_2	phrog_1194	96.2	2.6e-28	N/A	unknown function
eggNOG-mapper	UHGV-0149683_2	445974.CLORAM_02920	235.0	0	N/A	N/A
Pfam	UHGV-0149683_2	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0149683_2	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0149683_3	phrog_1535	433.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0149683_3	UniRef90_A0A1C5TVU6	670.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-0149683_3	445974.CLORAM_02921	1331.0	0	tape measure	N/A
COG	UHGV-0149683_3	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0149683_3	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0149683_4	445974.CLORAM_02922	159.0	0	N/A	N/A
PHROG	UHGV-0149683_5	phrog_183	69.5	5.3e-20	tail chaperone protein	tail
UniRef90	UHGV-0149683_5	UniRef90_UPI000487273D	148.0	2.00386e-43	N/A	N/A
eggNOG-mapper	UHGV-0149683_5	445974.CLORAM_02923	249.0	0	N/A	N/A
Pfam	UHGV-0149683_5	PF19591	N/A	N/A	N/A	DUF6096
structural_annotation	UHGV-0149683_5	PF19591	N/A	N/A	N/A	N/A
PHROG	UHGV-0149683_6	phrog_158	77.1	3.3e-22	major tail protein	tail
UniRef90	UHGV-0149683_6	UniRef90_A0A1C5TB95	220.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0149683_6	445974.CLORAM_02924	274.0	0	Phage tail tube protein, TTP	N/A
Pfam	UHGV-0149683_6	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-0149683_6	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0149683_7	phrog_78	50.0	0.000000000000058	tail terminator	connector
eggNOG-mapper	UHGV-0149683_7	445974.CLORAM_02925	243.0	0	N/A	N/A
structural_annotation	UHGV-0149683_7	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0149683_8	phrog_5	85.3	9e-25	tail completion or Neck1 protein	connector
UniRef90	UHGV-0149683_8	UniRef90_B0N8J2	348.0	0	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0149683_8	445974.CLORAM_02926	348.0	0	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0149683_8	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0149683_8	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0149683_8	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0149683_9	phrog_2168	115.2	3.1e-34	N/A	unknown function
eggNOG-mapper	UHGV-0149683_9	445974.CLORAM_02927	197.0	0	N/A	N/A
structural_annotation	UHGV-0149683_9	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0149683_10	phrog_132	59.7	4.7e-17	head-tail adaptor	connector
UniRef90	UHGV-0149683_10	UniRef90_A0A1C6BLH2	106.0	9.95e-28	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0149683_10	445974.CLORAM_02928	203.0	0	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0149683_10	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0149683_10	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0149683_11	phrog_2724	68.1	1.4e-19	N/A	unknown function
UniRef90	UHGV-0149683_11	UniRef90_A0A1C5TV19	53.5	0.000000148	Transcription termination factor Rho	N/A
PHROG	UHGV-0149683_12	phrog_422	302.5	0	major head protein	head and packaging
UniRef90	UHGV-0149683_12	UniRef90_A0A2H4JCM6	437.0	0	Putative capsid protein	N/A
eggNOG-mapper	UHGV-0149683_12	445974.CLORAM_02930	614.0	0	N/A	N/A
structural_annotation	UHGV-0149683_12	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0149683_13	phrog_172	172.4	0	head scaffolding protein	head and packaging
UniRef90	UHGV-0149683_13	UniRef90_UPI0004868D22	231.0	0	N/A	N/A
eggNOG-mapper	UHGV-0149683_13	445974.CLORAM_02931	362.0	0	N/A	N/A
Pfam	UHGV-0149683_13	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0149683_13	PF14265	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0149683_15	445974.CLORAM_02933	208.0	0	N/A	N/A
structural_annotation	UHGV-0149683_15	PF20111	N/A	N/A	N/A	N/A
PHROG	UHGV-0149683_16	phrog_115	315.2	0	minor head protein	head and packaging
UniRef90	UHGV-0149683_16	UniRef90_G9QX91	993.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0149683_16	445974.CLORAM_02934	998.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-0149683_16	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0149683_16	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0149683_16	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0149683_16	PF21814,PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0149683_17	phrog_64	406.8	0	portal protein	head and packaging
UniRef90	UHGV-0149683_17	UniRef90_B0N8K1	913.0	0	Phage portal protein, SPP1 family	N/A
eggNOG-mapper	UHGV-0149683_17	445974.CLORAM_02935	913.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0149683_17	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0149683_17	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0149683_17	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0149683_18	K06909	369.5	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0149683_18	phrog_5653	161.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0149683_18	UniRef90_B0N8K2	884.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0149683_18	445974.CLORAM_02936	884.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0149683_18	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0149683_18	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0149683_18	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0149683_18	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0149683_18	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0149683_19	K07474	98.8	1.2e-28	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0149683_19	phrog_51	117.7	1.1e-34	terminase small subunit	head and packaging
UniRef90	UHGV-0149683_19	UniRef90_B0N8K3	271.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0149683_19	445974.CLORAM_02937	271.0	0	Terminase small subunit	N/A
Pfam	UHGV-0149683_19	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0149683_19	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0149683_19	PF03592,COG3728	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0149683_21	697281.Mahau_0080	82.4	0.00000000000000456	N/A	N/A
structural_annotation	UHGV-0149683_21	PF20505,MF_00194,NF001463,COG2974	N/A	N/A	N/A	N/A
PHROG	UHGV-0149683_22	phrog_36	54.7	0.0000000000000017	transcriptional regulator	transcription regulation
Pfam	UHGV-0149683_22	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0149683_22	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0149683_22	PF04545,TIGR01636,COG2739	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0149683_23	PF09032	N/A	N/A	N/A	N/A
KOfam	UHGV-0149683_28	K01160	46.0	0.0000000000015	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0149683_28	phrog_140	88.8	7.4e-26	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0149683_28	UniRef90_A0A2T3FZC6	196.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0149683_28	478749.BRYFOR_07588	169.0	0	endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0149683_28	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0149683_28	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0149683_28	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0149683_29	phrog_16687	137.2	2.59997e-41	N/A	unknown function
eggNOG-mapper	UHGV-0149683_29	1123511.KB905868_gene197	82.8	8.76e-20	N/A	N/A
KOfam	UHGV-0149683_30	K07505	422.9	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0149683_30	phrog_2597	1236.2	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0149683_30	UniRef90_G9QX77	1529.0	0	PriCT_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0149683_30	999413.HMPREF1094_00232	1056.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0149683_30	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0149683_30	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0149683_30	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0149683_30	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-0149683_31	K17677	340.0	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0149683_31	phrog_16	279.3	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0149683_31	UniRef90_A0A1Y4QSI3	966.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0149683_31	1232449.BAHV02000008_gene620	854.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0149683_31	mREase_IV_00005	126.6	2.3e-37	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0149683_31	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0149683_31	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0149683_31	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0149683_31	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0149683_32	phrog_2698	203.6	0	N/A	unknown function
UniRef90	UHGV-0149683_32	UniRef90_A0A416DTR4	203.0	0	N/A	N/A
eggNOG-mapper	UHGV-0149683_32	1232449.BAHV02000008_gene619	176.0	0	N/A	N/A
structural_annotation	UHGV-0149683_32	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0149683_33	phrog_124	251.4	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0149683_33	UniRef90_UPI001EDD2096	441.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0149683_33	552396.HMPREF0863_02438	449.0	0	AAA domain	N/A
Pfam	UHGV-0149683_33	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0149683_33	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-0149683_34	K03546	54.3	0.0000000000000017	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0149683_34	phrog_1499	506.8	0	N/A	unknown function
UniRef90	UHGV-0149683_34	UniRef90_G9QX73	843.0	0	AAA_23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0149683_34	1232449.BAHV02000010_gene2696	588.0	0	AAA domain	N/A
Pfam	UHGV-0149683_34	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0149683_34	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0149683_34	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
UniRef90	UHGV-0149683_40	UniRef90_A0A416DT94	67.0	0.00000000000171	DNA-binding protein	N/A
KOfam	UHGV-0149683_44	K07729	43.4	0.0000000000074	K07729; putative transcriptional regulator	N/A
UniRef90	UHGV-0149683_44	UniRef90_G9QX62	140.0	2.92031e-42	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0149683_44	642492.Clole_1473	50.8	0.00000123	sequence-specific DNA binding	N/A
Pfam	UHGV-0149683_44	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0149683_44	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0149683_44	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0149683_45	K01356	104.9	1.3e-30	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0149683_45	phrog_4	118.3	8.8e-35	transcriptional repressor	transcription regulation
UniRef90	UHGV-0149683_45	UniRef90_G9QX61	444.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0149683_45	552396.HMPREF0863_02447	162.0	0	Represses a number of genes involved in the response to DNA damage (SOS response)	N/A
Pfam	UHGV-0149683_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0149683_45	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0149683_45	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0149683_45	PF01381,PF00717,MF_00015,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0149683_47	phrog_5783	280.5	0	N/A	unknown function
UniRef90	UHGV-0149683_47	UniRef90_UPI001C2BDE86	475.0	0	NYN domain-containing protein	N/A
eggNOG-mapper	UHGV-0149683_47	864563.HMPREF9166_1292	283.0	0	NYN domain	N/A
Pfam	UHGV-0149683_47	PF01936	N/A	N/A	NYN domain	NYN
COG	UHGV-0149683_47	COG1432	N/A	N/A	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	N/A
structural_annotation	UHGV-0149683_47	PF01936,MF_04140,TIGR00288,COG1432	N/A	N/A	N/A	N/A
KOfam	UHGV-0149683_48	K14059	106.7	3.8e-31	int; integrase	N/A
PHROG	UHGV-0149683_48	phrog_1	119.2	4.6e-35	integrase	integration and excision
UniRef90	UHGV-0149683_48	UniRef90_G9QX55	739.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0149683_48	445974.CLORAM_02973	732.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0149683_48	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0149683_48	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0149683_48	PF00589,PF13495,MF_02055,TIGR02225,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0149683	Yes	34,112	35	88	1