vOTU vOTU-137930

vOTU: vOTU-137930

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-137930
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00096 → vGENUS-03093 → vOTU-137930
Host lineage	Bacteria → Firmicutes → Bacilli → Lactobacillales → Aerococcaceae → Granulicatella → Granulicatella adiacens
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1468533
Biosample ID	SAMEA2738091
Genome length (bp)	30,833 bps
CheckV completeness	83.83% (Medium-quality)
CDS count	41
CDS density	95.33%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Lactobacillales → Aerococcaceae → Granulicatella → Granulicatella adiacens	Total connections	6	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 83.83)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1468533_1	phrog_253	143.2	1.19951e-42	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1468533_1	UniRef90_UPI00065FA7C8	216.0	0	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-1468533_1	1201292.DR75_1534	114.0	8.46e-31	Siphovirus Gp157	N/A
Pfam	UHGV-1468533_1	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-1468533_1	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-1468533_2	phrog_1341	76.1	4.3e-22	N/A	unknown function
UniRef90	UHGV-1468533_2	UniRef90_A0A139RN51	84.3	6.07e-19	N/A	N/A
eggNOG-mapper	UHGV-1468533_2	997830.HMPREF1124_0584	60.8	0.000000000164	N/A	N/A
PHROG	UHGV-1468533_3	phrog_1981	106.1	3.3e-31	N/A	unknown function
UniRef90	UHGV-1468533_3	UniRef90_A0A0U0KQN9	226.0	0	N/A	N/A
structural_annotation	UHGV-1468533_3	PF02075,MF_00034,NF000711,COG0816	N/A	N/A	N/A	N/A
PHROG	UHGV-1468533_4	phrog_62	111.6	3.6e-33	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1468533_4	UniRef90_A0A1X0WZ90	686.0	0	Type III restriction endonuclease subunit R	N/A
eggNOG-mapper	UHGV-1468533_4	566466.NOR53_299	58.5	0.00000238	Type III restriction protein res subunit	N/A
Pfam	UHGV-1468533_4	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
COG	UHGV-1468533_4	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-1468533_4	PF04851,PF16203,MF_01821,TIGR04095,COG0553	N/A	N/A	N/A	N/A
PHROG	UHGV-1468533_5	phrog_124	154.3	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1468533_5	UniRef90_UPI000660C4E3	515.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1468533_5	537874.B3GVY5_9CAUD	448.0	0	AAA domain	N/A
Pfam	UHGV-1468533_5	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1468533_5	PF13479,MF_00348,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-1468533_6	phrog_378	80.8	2e-23	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1468533_6	UniRef90_A0A7X2X3A2	220.0	0	N/A	N/A
eggNOG-mapper	UHGV-1468533_6	537874.B3GVY6_9CAUD	217.0	0	N/A	N/A
Pfam	UHGV-1468533_6	PF05037	N/A	N/A	N/A	DUF669
structural_annotation	UHGV-1468533_6	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-1468533_7	phrog_695	214.5	0	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1468533_7	UniRef90_UPI00065FF3E9	544.0	0	bifunctional DNA primase/polymerase	N/A
eggNOG-mapper	UHGV-1468533_7	1321372.AQQB01000060_gene51	393.0	0	N/A	N/A
Pfam	UHGV-1468533_7	PF09250	N/A	N/A	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
Pfam	UHGV-1468533_7	PF08708	N/A	N/A	Primase C terminal 1 (PriCT-1)	PriCT_1
COG	UHGV-1468533_7	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1468533_7	PF09250,PF08708,NF040561,COG4983	N/A	N/A	N/A	N/A
PHROG	UHGV-1468533_8	phrog_1313	460.6	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1468533_8	UniRef90_UPI00065FB22B	860.0	0	virulence-associated E family protein	N/A
eggNOG-mapper	UHGV-1468533_8	1461246.X2KU14_9VIRU	624.0	0	Virulence-associated protein E	N/A
Pfam	UHGV-1468533_8	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
structural_annotation	UHGV-1468533_8	PF05272,MF_04000,NF011296,COG5545	N/A	N/A	N/A	N/A
PHROG	UHGV-1468533_12	phrog_17088	51.1	0.000000000000026	N/A	unknown function
PHROG	UHGV-1468533_13	phrog_4960	55.6	6.2e-16	N/A	unknown function
structural_annotation	UHGV-1468533_13	PF06372,NF033216,COG4568	N/A	N/A	N/A	N/A
KOfam	UHGV-1468533_14	K06191	81.1	1.6e-23	nrdH; glutaredoxin-like protein NrdH	N/A
PHROG	UHGV-1468533_14	phrog_22	64.8	1.3e-18	thioredoxin domain	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1468533_14	UniRef90_UPI00065F7C56	141.0	1.66054e-42	glutaredoxin family protein	N/A
eggNOG-mapper	UHGV-1468533_14	638301.HMPREF0444_1516	95.5	5.43e-25	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins	N/A
Pfam	UHGV-1468533_14	PF00462	N/A	N/A	Glutaredoxin	Glutaredoxin
COG	UHGV-1468533_14	COG0695	N/A	N/A	Glutaredoxin	N/A
structural_annotation	UHGV-1468533_14	PF00462,MF_01132,NF007657,COG0695	N/A	N/A	N/A	N/A
PHROG	UHGV-1468533_15	phrog_2882	376.8	0	DNA methyltransferase	other
UniRef90	UHGV-1468533_15	UniRef90_UPI0006611DD5	470.0	0	DNA methyltransferase	N/A
eggNOG-mapper	UHGV-1468533_15	565653.EGBG_01954	336.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
Pfam	UHGV-1468533_15	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1468533_15	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1468533_15	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
UniRef90	UHGV-1468533_16	UniRef90_A0A1H9IMX6	130.0	2.1e-36	Phage transcriptional activator, RinA family	N/A
NCBIFam	UHGV-1468533_16	TIGR01636.1	N/A	N/A	phage transcriptional regulator, RinA family	N/A
structural_annotation	UHGV-1468533_16	PF05263,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-1468533_17	K07474	115.7	7.5e-34	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1468533_17	phrog_51	130.0	1.5e-38	terminase small subunit	head and packaging
UniRef90	UHGV-1468533_17	UniRef90_UPI00066EF1F7	288.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-1468533_17	764299.STRIC_2128	165.0	0	Terminase small subunit	N/A
Pfam	UHGV-1468533_17	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1468533_17	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1468533_17	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-1468533_18	K06909	75.8	6.2e-22	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1468533_18	phrog_2	67.5	2.7e-19	terminase large subunit	head and packaging
UniRef90	UHGV-1468533_18	UniRef90_UPI00069F6A29	869.0	0	terminase	N/A
eggNOG-mapper	UHGV-1468533_18	1282664.H354_06621	701.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-1468533_18	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1468533_18	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1468533_19	phrog_533	281.8	0	portal protein	head and packaging
UniRef90	UHGV-1468533_19	UniRef90_UPI001EFBE2BA	956.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1468533_19	1282664.H354_06626	667.0	0	N/A	N/A
Pfam	UHGV-1468533_19	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1468533_19	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1468533_20	phrog_581	244.5	0	minor head protein	head and packaging
UniRef90	UHGV-1468533_20	UniRef90_A0A139R8H5	443.0	0	Phage putative head morphogenesis protein, SPP1 gp7 family	N/A
eggNOG-mapper	UHGV-1468533_20	1282664.H354_06636	440.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1468533_20	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-1468533_20	PF03496	N/A	N/A	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
structural_annotation	UHGV-1468533_20	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1468533_22	phrog_2303	121.7	7e-36	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-1468533_22	1282664.H354_06656	217.0	0	N/A	N/A
PHROG	UHGV-1468533_23	phrog_422	340.2	0	major head protein	head and packaging
UniRef90	UHGV-1468533_23	UniRef90_A0A4V0BQY3	442.0	0	Main capsid protein Gp34-like protein	N/A
eggNOG-mapper	UHGV-1468533_23	1282664.H354_06661	442.0	0	N/A	N/A
structural_annotation	UHGV-1468533_23	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1468533_24	phrog_1378	42.9	0.0000000000075	N/A	unknown function
PHROG	UHGV-1468533_25	phrog_541	70.9	1.7e-20	head-tail adaptor	connector
eggNOG-mapper	UHGV-1468533_25	1282664.H354_06671	141.0	9.01035e-42	N/A	N/A
PHROG	UHGV-1468533_26	phrog_8710	129.2	1.4e-38	N/A	unknown function
eggNOG-mapper	UHGV-1468533_26	1282664.H354_06676	156.0	0	N/A	N/A
structural_annotation	UHGV-1468533_26	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1468533_27	phrog_556	51.8	0.000000000000013	minor head protein	head and packaging
UniRef90	UHGV-1468533_27	UniRef90_UPI0018E07468	224.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1468533_27	1282664.H354_06681	175.0	0	N/A	N/A
PHROG	UHGV-1468533_28	phrog_2595	79.6	3.5e-23	head-tail connector protein	connector
UniRef90	UHGV-1468533_28	UniRef90_UPI001D0627B3	124.0	7.16e-34	minor capsid protein	N/A
eggNOG-mapper	UHGV-1468533_28	1282664.H354_06686	202.0	0	N/A	N/A
Pfam	UHGV-1468533_28	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-1468533_28	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-1468533_29	phrog_820	118.9	2.8e-35	major tail protein	tail
eggNOG-mapper	UHGV-1468533_29	1282664.H354_06691	232.0	0	N/A	N/A
structural_annotation	UHGV-1468533_29	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1468533_31	phrog_8300	71.0	1.6e-20	N/A	unknown function
eggNOG-mapper	UHGV-1468533_31	1282664.H354_06701	87.8	2.39e-21	N/A	N/A
structural_annotation	UHGV-1468533_31	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1468533_32	phrog_8355	109.4	1e-32	N/A	unknown function
UniRef90	UHGV-1468533_32	UniRef90_UPI0009E34DBA	182.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1468533_32	1282664.H354_06706	110.0	8.01e-31	N/A	N/A
Pfam	UHGV-1468533_32	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1468533_32	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1468533_33	phrog_1535	545.4	0	tail length tape measure protein	tail
UniRef90	UHGV-1468533_33	UniRef90_A0A139R8H3	788.0	0	Phage tail length tape-measure protein	N/A
eggNOG-mapper	UHGV-1468533_33	1282664.H354_06711	773.0	0	Phage-related minor tail protein	N/A
COG	UHGV-1468533_33	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1468533_33	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1468533_34	phrog_1194	59.8	1.2e-17	N/A	unknown function
eggNOG-mapper	UHGV-1468533_34	1282664.H354_06716	131.0	3.8e-38	N/A	N/A
structural_annotation	UHGV-1468533_34	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1468533_35	phrog_588	228.2	0	tail fiber protein and host specificity	tail
UniRef90	UHGV-1468533_35	UniRef90_UPI0018E9B800	496.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-1468533_35	1282664.H354_06721	494.0	0	outer membrane autotransporter barrel domain protein	N/A
Pfam	UHGV-1468533_35	PF01259	N/A	N/A	SAICAR synthetase	SAICAR_synt
COG	UHGV-1468533_35	COG3468	N/A	N/A	Autotransporter adhesin AidA	N/A
PHROG	UHGV-1468533_36	phrog_372	345.3	0	tail protein	tail
UniRef90	UHGV-1468533_36	UniRef90_UPI00065F928E	1154.0	0	N/A	N/A
eggNOG-mapper	UHGV-1468533_36	1282664.H354_07750	372.0	0	N/A	N/A
Pfam	UHGV-1468533_36	PF05895	N/A	N/A	N/A	DUF859
structural_annotation	UHGV-1468533_36	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
PHROG	UHGV-1468533_38	phrog_199	65.6	6.1e-19	holin	lysis
UniRef90	UHGV-1468533_38	UniRef90_UPI00066B4B9C	253.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-1468533_38	638301.HMPREF0444_1493	195.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-1468533_38	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1468533_38	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
structural_annotation	UHGV-1468533_38	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-1468533_39	phrog_608	64.4	8.3e-19	holin	lysis
UniRef90	UHGV-1468533_39	UniRef90_UPI00066CB494	206.0	0	phage holin, LLH family	N/A
eggNOG-mapper	UHGV-1468533_39	1336234.JAGN01000004_gene510	76.6	1.99e-16	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-1468533_39	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-1468533_39	PF09682,TIGR01673	N/A	N/A	N/A	N/A
KOfam	UHGV-1468533_40	K06558	73.1	2.4e-21	MSR1, CD204; macrophage scavenger receptor 1	N/A
PHROG	UHGV-1468533_40	phrog_32123	859.5	0	N/A	unknown function
UniRef90	UHGV-1468533_40	UniRef90_UPI0009E45001	642.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-1468533_40	1005705.HMPREF9967_1058	599.0	0	domain, Protein	N/A
Pfam	UHGV-1468533_40	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1468533_40	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
structural_annotation	UHGV-1468533_40	PF10651,NF032891	N/A	N/A	N/A	N/A
PHROG	UHGV-1468533_41	phrog_1309	171.2	0	endolysin	lysis
UniRef90	UHGV-1468533_41	UniRef90_UPI00128D03D8	459.0	0	CHAP domain-containing protein	N/A
eggNOG-mapper	UHGV-1468533_41	997830.HMPREF1124_0615	213.0	0	CHAP domain	N/A
Pfam	UHGV-1468533_41	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-1468533_41	PF19127	N/A	N/A	Choline-binding repeat	Choline_bind_3
COG	UHGV-1468533_41	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
structural_annotation	UHGV-1468533_41	PF19127,PF05257,TIGR04035,TIGR02594,COG5263	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1468533	Yes	30,833	41	84	1