vOTU vOTU-138039

vOTU: vOTU-138039

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-138039
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00134 → vGENUS-00673 → vOTU-138039
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0024827
Biosample ID	N/A
Genome length (bp)	20,349 bps
CheckV completeness	57.84% (Medium-quality)
CDS count	27
CDS density	93.75%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955	Total connections	346	Host agreement	80.06
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955	Total connections	147	Host agreement	89.12

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 57.84)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0024827_2	phrog_3584	156.0	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0024827_2	1235800.C819_00515	88.6	3.43e-18	N/A	N/A
structural_annotation	UHGV-0024827_2	PF21578,NF041486	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0024827_4	1304880.JAGB01000002_gene2225	53.1	0.000000494	N/A	N/A
structural_annotation	UHGV-0024827_4	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0024827_5	phrog_119	72.8	4.7e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024827_5	UniRef90_A0A412ULY9	182.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0024827_5	1405.DJ92_863	87.0	6.57e-21	HNH endonuclease	N/A
Pfam	UHGV-0024827_5	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0024827_5	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0024827_6	phrog_5110	82.8	2.9e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0024827_6	UniRef90_UPI00057D0A7C	113.0	1.2e-30	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0024827_6	86416.Clopa_0336	103.0	1.27e-27	N/A	N/A
Pfam	UHGV-0024827_6	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0024827_6	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0024827_7	phrog_9	286.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0024827_7	UniRef90_A0A412UM03	986.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0024827_7	86416.Clopa_0337	622.0	0	Phage Terminase	N/A
Pfam	UHGV-0024827_7	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0024827_7	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0024827_7	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0024827_7	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0024827_8	phrog_12	99.1	3.4e-29	portal protein	head and packaging
UniRef90	UHGV-0024827_8	UniRef90_A0A412ULV9	570.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0024827_8	1415774.U728_1254	269.0	0	Phage portal protein	N/A
Pfam	UHGV-0024827_8	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0024827_8	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0024827_8	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0024827_8	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0024827_9	K01358	144.3	1.10002e-42	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0024827_9	phrog_94	211.6	0	head maturation protease	head and packaging
UniRef90	UHGV-0024827_9	UniRef90_A0A412ULU1	393.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0024827_9	86416.Clopa_0340	171.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0024827_9	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0024827_9	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0024827_9	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0024827_10	phrog_10	112.7	3.6e-33	major head protein	head and packaging
UniRef90	UHGV-0024827_10	UniRef90_A0A412ULW9	576.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0024827_10	1211817.CCAT010000053_gene2132	325.0	0	Phage capsid family	N/A
Pfam	UHGV-0024827_10	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0024827_10	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0024827_10	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0024827_10	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0024827_11	phrog_749	51.0	0.000000000000022	N/A	unknown function
UniRef90	UHGV-0024827_11	UniRef90_A0A1G5CMX8	103.0	7.08e-27	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0024827_11	349161.Dred_2603	55.5	0.0000000128	N/A	N/A
PHROG	UHGV-0024827_12	phrog_19734	65.8	5.6e-19	N/A	unknown function
eggNOG-mapper	UHGV-0024827_12	86416.Clopa_0343	55.5	0.0000000266	N/A	N/A
structural_annotation	UHGV-0024827_12	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0024827_13	698758.AXY_02180	61.2	0.000000000111	N/A	N/A
structural_annotation	UHGV-0024827_13	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
UniRef90	UHGV-0024827_14	UniRef90_UPI000E5564A4	171.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0024827_14	1118057.CAGX01000043_gene486	67.4	0.00000000000173	Bacteriophage HK97-gp10, putative tail-component	N/A
structural_annotation	UHGV-0024827_14	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0024827_15	phrog_88	62.2	7.8e-18	major tail protein	tail
UniRef90	UHGV-0024827_15	UniRef90_A0A1G5CNS8	173.0	0	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0024827_15	411470.RUMGNA_02319	60.8	0.00000000986	COG NOG11304 non supervised orthologous group	N/A
NCBIFam	UHGV-0024827_15	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0024827_15	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024827_16	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-0024827_18	K20283	49.1	0.000000000000014	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-0024827_18	phrog_5218	247.3	0	N/A	unknown function
UniRef90	UHGV-0024827_18	UniRef90_UPI000E474EFE	649.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0024827_18	1235792.C808_03050	254.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0024827_18	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0024827_18	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0024827_18	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0024827_19	phrog_33	66.0	8.8e-19	distal tail protein Dit	tail
UniRef90	UHGV-0024827_19	UniRef90_A0A0A8WHP7	71.6	0.0000000000338	Putative Tail component protein	N/A
eggNOG-mapper	UHGV-0024827_19	1582149.A0A0A8WHP7_9CAUD	71.6	0.00000000000567	Phage tail protein	N/A
structural_annotation	UHGV-0024827_19	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0024827_20	phrog_1067	103.3	2.3e-30	minor head protein	head and packaging
UniRef90	UHGV-0024827_20	UniRef90_A0A1G5CPD2	161.0	3.37012e-42	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-0024827_20	1567011.A0A0A7RUI9_9VIRU	81.3	0.0000000000000822	N-acetylmuramoyl-L-alanine amidase activity	N/A
NCBIFam	UHGV-0024827_20	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
structural_annotation	UHGV-0024827_20	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024827_21	PF10651,PF00541,NF040788	N/A	N/A	N/A	N/A
KOfam	UHGV-0024827_23	K01447	118.2	8e-35	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0024827_23	phrog_833	182.4	0	endolysin	lysis
UniRef90	UHGV-0024827_23	UniRef90_R6MSP5	618.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0024827_23	428125.CLOLEP_01782	182.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0024827_23	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0024827_23	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0024827_23	PF01510,PF01471,MF_04111,NF008758,COG5632,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0024827_24	phrog_1863	41.1	0.0000000000051	N/A	unknown function
UniRef90	UHGV-0024827_24	UniRef90_UPI001E345E1F	62.4	0.000000000066	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0024827_24	1226322.HMPREF1545_04027	63.9	0.00000000000242	N/A	N/A
PHROG	UHGV-0024827_25	phrog_443	55.8	0.0000000000000013	holin	lysis
UniRef90	UHGV-0024827_25	UniRef90_R6MWB0	124.0	8.65e-36	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0024827_25	1235797.C816_04172	81.3	1.18e-19	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0024827_25	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0024827_25	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-0024827_26	K22300	60.3	4e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0024827_26	phrog_8	50.9	0.000000000000031	transcriptional regulator	transcription regulation
UniRef90	UHGV-0024827_26	UniRef90_A0A3C1CUP1	242.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0024827_26	588581.Cpap_0877	62.8	0.000000000088	helix-turn-helix	N/A
Pfam	UHGV-0024827_26	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0024827_26	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0024827_26	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0024827_27	K02956	144.3	9.5008e-43	RP-S15, MRPS15, rpsO; small subunit ribosomal protein S15	N/A
UniRef90	UHGV-0024827_27	UniRef90_R6MU57	169.0	0	30S ribosomal protein S15	N/A
eggNOG-mapper	UHGV-0024827_27	428125.CLOLEP_01061	155.0	0	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome	N/A
Pfam	UHGV-0024827_27	PF00312	N/A	N/A	Ribosomal protein S15	Ribosomal_S15
NCBIFam	UHGV-0024827_27	TIGR00952.1	N/A	N/A	30S ribosomal protein S15	N/A
COG	UHGV-0024827_27	COG0184	N/A	N/A	Ribosomal protein S15P/S13E	N/A
HAMAP	UHGV-0024827_27	MF_01343_B	N/A	N/A	Small ribosomal subunit protein uS15 [rpsO]	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0024827	Yes	20,349	37	58	1