vOTU vOTU-138638

vOTU: vOTU-138638

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-138638
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Lacticaseibacillus → Lacticaseibacillus paracasei
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-01575 → vGENUS-02682 → vOTU-138638
Host lineage	Bacteria → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Lacticaseibacillus → Lacticaseibacillus paracasei
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0356870
Biosample ID	N/A
Genome length (bp)	24,187 bps
CheckV completeness	69.85% (Medium-quality)
CDS count	30
CDS density	91.80%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Lacticaseibacillus	Total connections	17	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Lacticaseibacillus → Lacticaseibacillus paracasei	Total connections	115	Host agreement	99.13

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 69.85)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0356870_1	phrog_10091	264.4	0	holin	lysis
UniRef90	UHGV-0356870_1	UniRef90_UPI0009C2B34A	223.0	0	phage holin	N/A
eggNOG-mapper	UHGV-0356870_1	543734.LCABL_10000	204.0	0	Bacteriophage holin	N/A
Pfam	UHGV-0356870_1	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-0356870_1	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-0356870_1	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0356870_1	PF04531,TIGR01598	N/A	N/A	N/A	N/A
PHROG	UHGV-0356870_2	phrog_1009	68.0	1e-19	N/A	unknown function
UniRef90	UHGV-0356870_2	UniRef90_S2NA97	131.0	3.25e-38	N/A	N/A
eggNOG-mapper	UHGV-0356870_2	543734.LCABL_09990	176.0	0	N/A	N/A
PHROG	UHGV-0356870_3	phrog_2566	113.1	9.4e-34	N/A	unknown function
UniRef90	UHGV-0356870_3	UniRef90_A8U7X4	64.3	0.0000000000104	Lj965 prophage protein	N/A
eggNOG-mapper	UHGV-0356870_3	543734.LCABL_09980	158.0	0	N/A	N/A
PHROG	UHGV-0356870_4	phrog_1401	170.7	0	N/A	unknown function
UniRef90	UHGV-0356870_4	UniRef90_UPI000F775C84	122.0	6.47e-33	N/A	N/A
eggNOG-mapper	UHGV-0356870_4	543734.LCABL_09970	272.0	0	N/A	N/A
Pfam	UHGV-0356870_4	PF07761	N/A	N/A	N/A	DUF1617
structural_annotation	UHGV-0356870_4	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0356870_5	phrog_1330	839.6	0	tail protein	tail
UniRef90	UHGV-0356870_5	UniRef90_UPI000BC36176	2493.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0356870_5	543734.LCABL_11220	1806.0	0	gp58-like protein	N/A
Pfam	UHGV-0356870_5	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0356870_5	PF02018	N/A	N/A	Carbohydrate binding domain	CBM_4_9
Pfam	UHGV-0356870_5	PF07902	N/A	N/A	gp58-like protein	Gp58
NCBIFam	UHGV-0356870_5	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0356870_5	COG0497	N/A	N/A	DNA repair ATPase RecN	N/A
structural_annotation	UHGV-0356870_5	PF14594,PF18957,MF_04116,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0356870_6	phrog_33	76.8	4.8e-22	distal tail protein Dit	tail
UniRef90	UHGV-0356870_6	UniRef90_K0N3Q3	452.0	0	Tail protein	N/A
eggNOG-mapper	UHGV-0356870_6	543734.LCABL_09950	451.0	0	phage tail	N/A
COG	UHGV-0356870_6	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0356870_6	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0356870_7	K10396	43.1	0.0000000000029	KIF5; kinesin family member 5	N/A
PHROG	UHGV-0356870_7	phrog_58	368.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0356870_7	UniRef90_K0N3P8	1211.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0356870_7	543734.LCABL_11200	1213.0	0	Phage tail tape measure protein	N/A
Pfam	UHGV-0356870_7	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0356870_7	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0356870_7	PF10145,MF_04138,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0356870_8	phrog_4888	222.2	0	tail assembly chaperone	tail
UniRef90	UHGV-0356870_8	UniRef90_K0MTV4	238.0	0	N/A	N/A
eggNOG-mapper	UHGV-0356870_8	543734.LCABL_09920	238.0	0	N/A	N/A
structural_annotation	UHGV-0356870_8	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0356870_9	phrog_11502	118.2	5.8e-35	tail protein	tail
UniRef90	UHGV-0356870_9	UniRef90_A0A6H3FTM3	426.0	0	Major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0356870_9	543734.LCABL_09910	426.0	0	N/A	N/A
structural_annotation	UHGV-0356870_9	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0356870_10	phrog_5	49.7	0.000000000000099	tail completion or Neck1 protein	connector
UniRef90	UHGV-0356870_10	UniRef90_UPI001C8BC514	83.6	2.89e-18	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0356870_10	543734.LCABL_09900	256.0	0	N/A	N/A
Pfam	UHGV-0356870_10	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0356870_10	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0356870_10	TIGR01725,COG5005	N/A	N/A	N/A	N/A
UniRef90	UHGV-0356870_11	UniRef90_K0N3E7	218.0	0	N/A	N/A
eggNOG-mapper	UHGV-0356870_11	543734.LCABL_09890	220.0	0	N/A	N/A
structural_annotation	UHGV-0356870_11	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0356870_12	phrog_4014	166.3	0	head-tail adaptor	connector
UniRef90	UHGV-0356870_12	UniRef90_K0N392	227.0	0	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0356870_12	543734.LCABL_09880	227.0	0	Phage head-tail joining protein	N/A
Pfam	UHGV-0356870_12	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0356870_12	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0356870_12	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0356870_13	phrog_4609	148.3	9.80909e-45	N/A	unknown function
UniRef90	UHGV-0356870_13	UniRef90_K6RR14	210.0	0	N/A	N/A
eggNOG-mapper	UHGV-0356870_13	543734.LCABL_09870	212.0	0	N/A	N/A
Pfam	UHGV-0356870_13	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-0356870_13	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
PHROG	UHGV-0356870_15	phrog_10	140.0	2.09999e-41	major head protein	head and packaging
UniRef90	UHGV-0356870_15	UniRef90_A0A0P0IV50	786.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0356870_15	543734.LCABL_11110	788.0	0	Phage capsid family	N/A
Pfam	UHGV-0356870_15	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0356870_15	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0356870_15	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0356870_15	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0356870_16	K01358	134.8	8.9e-40	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0356870_16	phrog_94	221.8	0	head maturation protease	head and packaging
UniRef90	UHGV-0356870_16	UniRef90_A0A6H3FSE6	456.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0356870_16	543734.LCABL_11100	459.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0356870_16	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0356870_16	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0356870_16	PF00574,MF_00444,NF011091,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0356870_17	phrog_12	179.1	0	portal protein	head and packaging
UniRef90	UHGV-0356870_17	UniRef90_K6S8Y6	801.0	0	Phage-associated portal protein	N/A
eggNOG-mapper	UHGV-0356870_17	543734.LCABL_11090	809.0	0	Phage portal protein	N/A
Pfam	UHGV-0356870_17	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0356870_17	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0356870_17	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0356870_18	phrog_9	397.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0356870_18	UniRef90_K0MU46	1161.0	0	Phage terminase-like protein, large subunit	N/A
eggNOG-mapper	UHGV-0356870_18	543734.LCABL_09820	1166.0	0	overlaps another CDS with the same product name	N/A
Pfam	UHGV-0356870_18	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0356870_18	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0356870_18	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0356870_18	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0356870_19	phrog_1066	122.2	1.9e-36	N/A	unknown function
eggNOG-mapper	UHGV-0356870_19	543734.LCABL_09810	237.0	0	N/A	N/A
structural_annotation	UHGV-0356870_19	PF05119,TIGR01558	N/A	N/A	N/A	N/A
PHROG	UHGV-0356870_20	phrog_119	83.7	2.5e-24	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0356870_20	UniRef90_K0N9P0	251.0	0	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0356870_20	543734.LCABL_09800	255.0	0	HNH endonuclease	N/A
Pfam	UHGV-0356870_20	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0356870_20	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0356870_21	phrog_7312	91.4	9.2e-27	N/A	unknown function
eggNOG-mapper	UHGV-0356870_21	1449338.JQLU01000005_gene3790	83.6	1.25e-17	N/A	N/A
PADLOC	UHGV-0356870_21	KwaA_00002	113.0	3.8e-33	N/A	Kiwa
structural_annotation	UHGV-0356870_21	NF041622	N/A	N/A	N/A	N/A
PHROG	UHGV-0356870_22	phrog_11123	71.5	1.1e-20	N/A	unknown function
UniRef90	UHGV-0356870_22	UniRef90_UPI0010AE9D4A	198.0	0	N/A	N/A
eggNOG-mapper	UHGV-0356870_22	1401067.HMPREF0872_06375	72.0	0.0000000000201	N/A	N/A
PADLOC	UHGV-0356870_22	KwaB_00010	111.0	2e-32	N/A	Kiwa
Pfam	UHGV-0356870_22	PF16162	N/A	N/A	Kiwa protein KwaB-like	KwaB
structural_annotation	UHGV-0356870_22	PF16162,NF041623	N/A	N/A	N/A	N/A
PHROG	UHGV-0356870_23	phrog_248	130.5	9.9e-39	transcriptional activator	transcription regulation
UniRef90	UHGV-0356870_23	UniRef90_C2JVI1	284.0	0	Phage transcriptional regulator, ArpU family	N/A
eggNOG-mapper	UHGV-0356870_23	543734.LCABL_05720	205.0	0	N/A	N/A
NCBIFam	UHGV-0356870_23	TIGR01637.1	N/A	N/A	ArpU family phage packaging/lysis transcriptional regulator	N/A
structural_annotation	UHGV-0356870_23	PF05263,MF_00674,TIGR01637,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-0356870_24	phrog_4583	42.8	0.0000000000073	transcriptional repressor	transcription regulation
UniRef90	UHGV-0356870_24	UniRef90_UPI000F4E1EBF	139.0	5.88966e-42	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0356870_24	323098.Nwi_0843	48.9	0.000000881	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0356870_24	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0356870_24	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0356870_24	PF13443,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0356870_25	phrog_98	99.5	2.7e-29	N/A	unknown function
UniRef90	UHGV-0356870_25	UniRef90_UPI000F43A43E	280.0	0	YopX family protein	N/A
eggNOG-mapper	UHGV-0356870_25	1423732.BALS01000114_gene23	198.0	0	YopX protein	N/A
Pfam	UHGV-0356870_25	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0356870_25	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0356870_25	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0356870_26	phrog_37878	51.5	0.000000000000016	N/A	unknown function
PHROG	UHGV-0356870_27	phrog_5222	99.4	1.8e-29	N/A	unknown function
UniRef90	UHGV-0356870_27	UniRef90_A0A0E2BWQ8	81.3	1.48e-18	N/A	N/A
KOfam	UHGV-0356870_28	K01160	64.6	2.6e-18	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0356870_28	phrog_140	117.9	7.5e-35	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0356870_28	UniRef90_A0A853KJH5	216.0	0	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0356870_28	568703.LGG_01112	218.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0356870_28	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0356870_28	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0356870_28	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0356870_29	phrog_8182	259.8	0	N/A	unknown function
UniRef90	UHGV-0356870_29	UniRef90_A0A0N7IR79	232.0	0	Helicase IV	N/A
KOfam	UHGV-0356870_30	K02314	93.0	3.7e-27	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0356870_30	phrog_11530	75.3	9e-22	N/A	unknown function
UniRef90	UHGV-0356870_30	UniRef90_UPI00161E174E	179.0	0	DnaB-like helicase C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0356870_30	39103.U5U3Y9_9CAUD	179.0	0	DNA helicase activity	N/A
Pfam	UHGV-0356870_30	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0356870	Yes	24,187	45	70	1