vOTU vOTU-139214

vOTU: vOTU-139214

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-139214
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger sp900539695
Taxonomy (UHGV)	vFAM-00001 → vSUBFAM-01250 → vGENUS-12114 → vOTU-139214
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger sp900539695
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0004894
Biosample ID	N/A
Genome length (bp)	32,133 bps
CheckV completeness	72.97% (Medium-quality)
CDS count	50
CDS density	92.09%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis	Total connections	1	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger sp900539695	Total connections	12	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 72.97)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0004894_1	phrog_706	91.8	7.5e-27	N/A	unknown function
UniRef90	UHGV-0004894_1	UniRef90_UPI0013141117	214.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0004894_1	665956.HMPREF1032_03058	221.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0004894_1	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0004894_1	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0004894_2	phrog_11299	92.0	3.6e-27	N/A	unknown function
eggNOG-mapper	UHGV-0004894_2	665956.HMPREF1032_03059	138.0	6.20999e-40	N/A	N/A
structural_annotation	UHGV-0004894_2	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0004894_3	phrog_3099	158.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0004894_3	411471.SUBVAR_06936	265.0	0	N/A	N/A
structural_annotation	UHGV-0004894_3	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0004894_4	phrog_3266	81.6	7.6e-24	tail completion	connector
eggNOG-mapper	UHGV-0004894_4	663278.Ethha_0098	58.5	0.00000000602	N/A	N/A
structural_annotation	UHGV-0004894_4	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0004894_5	phrog_556	87.0	1.7e-25	minor head protein	head and packaging
UniRef90	UHGV-0004894_5	UniRef90_UPI001958E7C1	106.0	4.61e-27	minor capsid protein	N/A
eggNOG-mapper	UHGV-0004894_5	525255.HMPREF0077_0381	84.7	1.23e-19	Minor capsid protein	N/A
Pfam	UHGV-0004894_5	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0004894_5	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0004894_6	phrog_3366	41.1	0.000000000000042	N/A	unknown function
Pfam	UHGV-0004894_6	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0004894_6	PF20536,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0004894_7	phrog_541	42.2	0.000000000014	head-tail adaptor	connector
PHROG	UHGV-0004894_8	phrog_247	186.5	0	major head protein	head and packaging
UniRef90	UHGV-0004894_8	UniRef90_A0A8J4H4L4	137.0	4.39e-34	Coat protein	N/A
eggNOG-mapper	UHGV-0004894_8	768710.DesyoDRAFT_1109	126.0	4.54e-31	N/A	N/A
structural_annotation	UHGV-0004894_8	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0004894_9	phrog_194	47.3	0.00000000000038	head scaffolding protein	head and packaging
UniRef90	UHGV-0004894_9	UniRef90_UPI001D080C73	55.5	0.00000418	phage scaffolding protein	N/A
structural_annotation	UHGV-0004894_9	PF06810,MF_02110	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0004894_10	PF10723	N/A	N/A	N/A	N/A
PHROG	UHGV-0004894_12	phrog_2443	218.3	0	amidoligase enzyme	other
UniRef90	UHGV-0004894_12	UniRef90_A0A174F0K6	285.0	0	Alpha-L-fucosidase	N/A
eggNOG-mapper	UHGV-0004894_12	457415.HMPREF1006_00457	293.0	0	N/A	N/A
AcrCatalog	UHGV-0004894_12	cluster_58247	77.4	5.68e-18	NA	N/A
Pfam	UHGV-0004894_12	PF12224	N/A	N/A	Putative amidoligase enzyme	Amidoligase_2
structural_annotation	UHGV-0004894_12	PF12224,MF_01609,NF010045,COG2170	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0004894_15	445972.ANACOL_00207	71.2	0.00000000000000128	N/A	N/A
KOfam	UHGV-0004894_17	K00682	61.5	1.2e-17	GGCT; gamma-glutamylcyclotransferase [EC:4.3.2.9]	N/A
PHROG	UHGV-0004894_17	phrog_2520	109.5	2.3e-32	gamma-glutamyl cyclotransferase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0004894_17	UniRef90_A0A367GJL1	272.0	0	Gamma-glutamylcyclotransferase	N/A
eggNOG-mapper	UHGV-0004894_17	1235800.C819_03970	145.0	1.63994e-41	Gamma-glutamyl cyclotransferase, AIG2-like	N/A
Pfam	UHGV-0004894_17	PF06094	N/A	N/A	Gamma-glutamyl cyclotransferase, AIG2-like	GGACT
COG	UHGV-0004894_17	COG2105	N/A	N/A	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	N/A
structural_annotation	UHGV-0004894_17	PF06094,COG2105	N/A	N/A	N/A	N/A
PHROG	UHGV-0004894_18	phrog_581	270.2	0	minor head protein	head and packaging
UniRef90	UHGV-0004894_18	UniRef90_A0A1C6FYV4	252.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0004894_18	936375.HMPREF1152_1071	229.0	0	N/A	N/A
Pfam	UHGV-0004894_18	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0004894_18	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0004894_18	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0004894_20	phrog_533	279.0	0	portal protein	head and packaging
UniRef90	UHGV-0004894_20	UniRef90_A0A3E2XD02	616.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0004894_20	642492.Clole_0815	255.0	0	N/A	N/A
Pfam	UHGV-0004894_20	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0004894_20	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0004894_21	K06909	303.1	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0004894_21	phrog_3717	122.7	2.3e-36	terminase large subunit	head and packaging
UniRef90	UHGV-0004894_21	UniRef90_A0A367GIK4	861.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0004894_21	665956.HMPREF1032_02957	404.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0004894_21	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0004894_21	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
COG	UHGV-0004894_21	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0004894_21	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0004894_22	phrog_309	51.0	0.000000000000012	terminase small subunit	head and packaging
UniRef90	UHGV-0004894_22	UniRef90_A0A1C7FRC2	77.8	0.00000000000000183	Transposase	N/A
eggNOG-mapper	UHGV-0004894_22	1200557.JHWV01000001_gene278	64.3	0.0000000000517	transposase activity	N/A
COG	UHGV-0004894_22	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
KOfam	UHGV-0004894_23	K00571	122.7	4.4e-36	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0004894_23	phrog_498	446.4	0	DNA methyltransferase	other
UniRef90	UHGV-0004894_23	UniRef90_A0A367GIB5	815.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0004894_23	1423758.BN55_01455	420.0	0	DNA methylase	N/A
PADLOC	UHGV-0004894_23	MTase_II_00015	274.0	0	Type II methyltransferase	RM
Pfam	UHGV-0004894_23	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0004894_23	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0004894_23	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0004894_23	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-0004894_26	K23518	215.3	0	MACROD, ymdB; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106]	N/A
UniRef90	UHGV-0004894_26	UniRef90_A0A367GJM1	299.0	0	RNase III inhibitor	N/A
eggNOG-mapper	UHGV-0004894_26	383372.Rcas_0425	158.0	0	PFAM Appr-1-p processing domain protein	N/A
Pfam	UHGV-0004894_26	PF01661	N/A	N/A	Macro domain	Macro
COG	UHGV-0004894_26	COG2110	N/A	N/A	O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain	N/A
structural_annotation	UHGV-0004894_26	PF01661,MF_01205,NF001663,COG2110	N/A	N/A	N/A	N/A
PHROG	UHGV-0004894_28	phrog_3895	41.6	0.000000000017	ADP-ribosyltransferase exoenzyme toxin	moron, auxiliary metabolic gene and host takeover
COG	UHGV-0004894_28	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0004894_28	PF03496,MF_04142,NF041404	N/A	N/A	N/A	N/A
PHROG	UHGV-0004894_29	phrog_8680	196.0	0	N/A	unknown function
UniRef90	UHGV-0004894_29	UniRef90_A0A6L5T7C3	162.0	0	N/A	N/A
eggNOG-mapper	UHGV-0004894_29	1229517.AMFD01000023_gene1324	156.0	8.40779e-45	N/A	N/A
Pfam	UHGV-0004894_29	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0004894_29	PF14386,NF041059	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0004894_31	PF07374,TIGR01637	N/A	N/A	N/A	N/A
KOfam	UHGV-0004894_33	K14440	126.7	7.4e-38	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0004894_33	phrog_62	379.4	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004894_33	UniRef90_A0A367GJS6	806.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0004894_33	1385512.N784_13490	472.0	0	SNF2 family	N/A
PADLOC	UHGV-0004894_33	ZorD1_00007	94.1	1.7e-27	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0004894_33	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0004894_33	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0004894_33	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0004894_33	PF13872,PF16203,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
PHROG	UHGV-0004894_34	phrog_93	54.7	0.0000000000000015	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004894_34	UniRef90_UPI0018F1F23F	159.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0004894_34	1235798.C817_04115	98.2	3.27e-25	VRR-NUC domain protein	N/A
structural_annotation	UHGV-0004894_34	PF08774,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-0004894_35	phrog_256	955.1	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004894_35	UniRef90_A0A367GI49	1139.0	0	Virulence-associated protein E	N/A
eggNOG-mapper	UHGV-0004894_35	1395587.P364_0122125	746.0	0	virulence-associated E family protein	N/A
Pfam	UHGV-0004894_35	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-0004894_35	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-0004894_35	PF05272,MF_04000,NF005477,NF040562,COG5545	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0004894_37	PF13451	N/A	N/A	N/A	N/A
PHROG	UHGV-0004894_38	phrog_2245	63.1	4.8e-18	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0004894_38	UniRef90_A0A1I0VIB3	56.2	0.0000000437	MazG nucleotide pyrophosphohydrolase domain-containing protein	N/A
structural_annotation	UHGV-0004894_38	PF02888,COG1694	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0004894_41	760568.Desku_0919	84.0	2.78e-17	N/A	N/A
structural_annotation	UHGV-0004894_41	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
KOfam	UHGV-0004894_42	K02334	770.1	0	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	N/A
PHROG	UHGV-0004894_42	phrog_17	356.7	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004894_42	UniRef90_A0A367GJN4	1172.0	0	POLAc domain-containing protein	N/A
eggNOG-mapper	UHGV-0004894_42	693746.OBV_43170	672.0	0	DNA polymerase	N/A
Pfam	UHGV-0004894_42	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
COG	UHGV-0004894_42	COG0749	N/A	N/A	DNA polymerase I, 3'-5' exonuclease and polymerase domains	N/A
structural_annotation	UHGV-0004894_42	PF00476,MF_04101,NF011540,COG0749	N/A	N/A	N/A	N/A
PHROG	UHGV-0004894_43	phrog_112	164.4	0	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004894_43	UniRef90_A0A367GK15	320.0	0	N/A	N/A
eggNOG-mapper	UHGV-0004894_43	1408422.JHYF01000003_gene949	154.0	4.2039e-44	N/A	N/A
Pfam	UHGV-0004894_43	PF10991	N/A	N/A	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
structural_annotation	UHGV-0004894_43	PF10991,MF_04153	N/A	N/A	N/A	N/A
KOfam	UHGV-0004894_45	K07465	48.9	0.000000000000091	K07465; putative RecB family exonuclease	N/A
PHROG	UHGV-0004894_45	phrog_69	325.9	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004894_45	UniRef90_A0A367GI90	651.0	0	N/A	N/A
eggNOG-mapper	UHGV-0004894_45	1408437.JNJN01000081_gene1518	329.0	0	N/A	N/A
Pfam	UHGV-0004894_45	PF10926	N/A	N/A	N/A	DUF2800
COG	UHGV-0004894_45	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-0004894_45	PF10926,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0004894_47	PF01157,MF_01354,NF002745,COG2139	N/A	N/A	N/A	N/A
PHROG	UHGV-0004894_48	phrog_18562	49.3	0.00000000000012	N/A	unknown function
KOfam	UHGV-0004894_49	K07171	60.5	4.5e-17	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	N/A
PHROG	UHGV-0004894_49	phrog_1936	65.0	1.4e-18	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0004894_49	UniRef90_A0A3E2XCI4	65.1	0.0000000000401	Type II toxin-antitoxin system PemK/MazF family toxin	N/A
eggNOG-mapper	UHGV-0004894_49	1280679.ATVX01000013_gene2601	52.4	0.000000636	PemK-like, MazF-like toxin of type II toxin-antitoxin system	N/A
Pfam	UHGV-0004894_49	PF02452	N/A	N/A	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
COG	UHGV-0004894_49	COG2337	N/A	N/A	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	N/A
structural_annotation	UHGV-0004894_49	PF02452,NF007386,COG2337	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0004894	Yes	32,133	59	73	1