vOTU vOTU-139235

vOTU: vOTU-139235

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-139235
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-02146 → vGENUS-06870 → vOTU-139235
Host lineage	Bacteria → Firmicutes → Bacilli → Staphylococcales → Gemellaceae → Gemella → Gemella morbillorum
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1427702
Biosample ID	SAMEA2738017
Genome length (bp)	21,043 bps
CheckV completeness	60.76% (Medium-quality)
CDS count	28
CDS density	91.51%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Staphylococcales → Gemellaceae → Gemella → Gemella morbillorum	Total connections	2	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 60.76)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1427702_1	phrog_998	243.6	0	endolysin	lysis
UniRef90	UHGV-1427702_1	UniRef90_A0A4D6AB26	369.0	0	Lysin	N/A
eggNOG-mapper	UHGV-1427702_1	873448.STRPO_0302	337.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-1427702_1	PF05382	N/A	N/A	Bacteriophage peptidoglycan hydrolase	Amidase_5
COG	UHGV-1427702_1	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-1427702_1	PF05382,PF18341,NF033742,COG0791,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-1427702_2	phrog_962	80.9	1.7e-23	holin	lysis
UniRef90	UHGV-1427702_2	UniRef90_A0A2N6SFH9	97.4	8.99e-25	Phage holin	N/A
eggNOG-mapper	UHGV-1427702_2	1234679.BN424_2123	87.4	1.41e-21	Holin, phage phi LC3 family	N/A
Pfam	UHGV-1427702_2	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-1427702_2	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-1427702_2	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1427702_2	COG5546	N/A	N/A	N/A	N/A
PHROG	UHGV-1427702_3	phrog_4257	77.3	1.8e-22	N/A	unknown function
eggNOG-mapper	UHGV-1427702_3	59241.O03977_BPDP1	65.1	0.00000000000864	N/A	N/A
PHROG	UHGV-1427702_4	phrog_1382	65.5	4.2e-19	N/A	unknown function
eggNOG-mapper	UHGV-1427702_4	665950.HMPREF1025_01332	48.1	0.000000419	N/A	N/A
NCBIFam	UHGV-1427702_4	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-1427702_4	NF040910	N/A	N/A	N/A	N/A
PHROG	UHGV-1427702_5	phrog_1060	64.9	9e-19	N/A	unknown function
UniRef90	UHGV-1427702_5	UniRef90_UPI00195AF2AB	123.0	2.55e-33	N/A	N/A
eggNOG-mapper	UHGV-1427702_5	562981.HMPREF0428_01807	120.0	6.39e-33	N/A	N/A
Pfam	UHGV-1427702_5	PF07104	N/A	N/A	N/A	DUF1366
structural_annotation	UHGV-1427702_5	PF07104	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1427702_6	562981.HMPREF0428_01808	63.9	0.00000000000115	N/A	N/A
PHROG	UHGV-1427702_7	phrog_2270	488.3	0	N/A	unknown function
UniRef90	UHGV-1427702_7	UniRef90_A0A420YQM7	800.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1427702_7	1321820.HMPREF1983_00922	503.0	0	N/A	N/A
Pfam	UHGV-1427702_7	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1427702_7	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1427702_7	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1427702_7	PF14594,PF03422,PF17994,MF_00813,TIGR01665,NF033675,TIGR03511,TIGR02961,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1427702_8	phrog_33	57.7	3.3e-16	distal tail protein Dit	tail
UniRef90	UHGV-1427702_8	UniRef90_A0A420YQT5	312.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1427702_8	1321820.HMPREF1983_00923	306.0	0	tail component	N/A
COG	UHGV-1427702_8	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1427702_8	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1427702_9	phrog_58	364.9	0	tail length tape measure protein	tail
UniRef90	UHGV-1427702_9	UniRef90_U2QMT3	926.0	0	Cation diffusion facilitator family transporter	N/A
eggNOG-mapper	UHGV-1427702_9	1321820.HMPREF1983_00924	926.0	0	Phage tail tape measure protein	N/A
COG	UHGV-1427702_9	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1427702_9	PF20155	N/A	N/A	N/A	N/A
PHROG	UHGV-1427702_10	phrog_1633	166.3	0	N/A	unknown function
UniRef90	UHGV-1427702_10	UniRef90_A0A139NAW5	146.0	5.22684e-43	N/A	N/A
eggNOG-mapper	UHGV-1427702_10	1321820.HMPREF1983_00925	182.0	0	N/A	N/A
Pfam	UHGV-1427702_10	PF17318	N/A	N/A	N/A	DUF5361
structural_annotation	UHGV-1427702_10	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-1427702_11	phrog_1526	108.0	4.4e-32	N/A	unknown function
UniRef90	UHGV-1427702_11	UniRef90_D2BQF7	104.0	1.28e-27	N/A	N/A
eggNOG-mapper	UHGV-1427702_11	1321820.HMPREF1983_00926	129.0	4e-38	N/A	N/A
PHROG	UHGV-1427702_12	phrog_117	189.4	0	major tail protein	tail
UniRef90	UHGV-1427702_12	UniRef90_U2QNN1	321.0	0	Prophage LambdaSa1, structural protein	N/A
eggNOG-mapper	UHGV-1427702_12	1321820.HMPREF1983_00927	321.0	0	domain, Protein	N/A
COG	UHGV-1427702_12	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1427702_12	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1427702_13	phrog_123	69.6	5.2e-20	tail terminator	connector
UniRef90	UHGV-1427702_13	UniRef90_A0A0E8ZUI3	131.0	2.05e-37	Gp45	N/A
eggNOG-mapper	UHGV-1427702_13	1321820.HMPREF1983_00928	175.0	0	N/A	N/A
structural_annotation	UHGV-1427702_13	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-1427702_14	phrog_387	85.1	5.4e-25	neck protein	connector
UniRef90	UHGV-1427702_14	UniRef90_A0A139NAV7	82.8	2.61e-19	Phage-associated protein	N/A
eggNOG-mapper	UHGV-1427702_14	1321820.HMPREF1983_00929	103.0	1.76e-28	N/A	N/A
PHROG	UHGV-1427702_15	phrog_501	106.0	2.3e-31	head closure Hc1	connector
UniRef90	UHGV-1427702_15	UniRef90_Q7Y4I1	166.0	0	Gp43	N/A
eggNOG-mapper	UHGV-1427702_15	1321820.HMPREF1983_00930	192.0	0	N/A	N/A
structural_annotation	UHGV-1427702_15	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1427702_16	phrog_137	110.8	6.9e-33	head-tail adaptor Ad1	connector
UniRef90	UHGV-1427702_16	UniRef90_U2RW81	215.0	0	Phage protein Gp19/Gp15/Gp42	N/A
eggNOG-mapper	UHGV-1427702_16	1321820.HMPREF1983_00931	215.0	0	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-1427702_16	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-1427702_16	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-1427702_18	phrog_32396	172.5	0	N/A	unknown function
UniRef90	UHGV-1427702_18	UniRef90_M1Q178	504.0	0	Putative phage capsid protein	N/A
eggNOG-mapper	UHGV-1427702_18	1214184.ALKY01000039_gene918	505.0	0	Phage capsid family	N/A
Pfam	UHGV-1427702_18	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1427702_18	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-1427702_18	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1427702_19	phrog_233	122.8	3.4e-36	head scaffolding protein	head and packaging
UniRef90	UHGV-1427702_19	UniRef90_A0A2N6SCG6	217.0	0	Phage scaffold protein	N/A
eggNOG-mapper	UHGV-1427702_19	1321820.HMPREF1983_00934	213.0	0	N/A	N/A
structural_annotation	UHGV-1427702_19	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1427702_20	phrog_17688	502.6	0	N/A	unknown function
UniRef90	UHGV-1427702_20	UniRef90_U2S4W8	884.0	0	Putative phage terminase, large subunit	N/A
eggNOG-mapper	UHGV-1427702_20	1321820.HMPREF1983_00935	884.0	0	phage terminase, large subunit	N/A
COG	UHGV-1427702_20	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1427702_20	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1427702_21	phrog_2494	327.6	0	minor head protein	head and packaging
UniRef90	UHGV-1427702_21	UniRef90_U2RW86	628.0	0	CdiA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1427702_21	1321820.HMPREF1983_00936	628.0	0	N/A	N/A
Pfam	UHGV-1427702_21	PF18451	N/A	N/A	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
structural_annotation	UHGV-1427702_21	PF18451	N/A	N/A	N/A	N/A
PHROG	UHGV-1427702_22	phrog_104	305.0	0	portal protein	head and packaging
UniRef90	UHGV-1427702_22	UniRef90_A0A4J1ZT89	709.0	0	Gp34	N/A
eggNOG-mapper	UHGV-1427702_22	1321820.HMPREF1983_00937	833.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-1427702_22	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1427702_23	phrog_36	44.3	0.0000000000033	transcriptional regulator	transcription regulation
UniRef90	UHGV-1427702_23	UniRef90_A0A533I0C4	121.0	2.45e-32	N/A	N/A
Pfam	UHGV-1427702_23	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-1427702_23	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1427702_23	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1427702_24	NF007260	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1427702_26	TIGR02338	N/A	N/A	N/A	N/A
UniRef90	UHGV-1427702_27	UniRef90_UPI001A470AE5	87.0	1.08e-17	med21 domain-containing protein	N/A
eggNOG-mapper	UHGV-1427702_27	1321820.HMPREF1983_00940	103.0	2.96e-25	N/A	N/A
structural_annotation	UHGV-1427702_27	PF20432,NF040507,COG2944	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1427702	Yes	21,043	33	61	1