vOTU vOTU-139253

vOTU: vOTU-139253

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-139253
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-04621 → vOTU-139253
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger sp900772715
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0176645
Biosample ID	N/A
Genome length (bp)	18,228 bps
CheckV completeness	51.80% (Medium-quality)
CDS count	35
CDS density	91.36%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger sp900772715	Total connections	23	Host agreement	95.65
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → UBA5884 → UBA5884 sp900551505	Total connections	13	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 51.8)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0176645_1	1120746.CCNL01000014_gene2105	102.0	9.22e-21	tape measure	N/A
Pfam	UHGV-0176645_1	PF05218	N/A	N/A	N/A	DUF713
COG	UHGV-0176645_1	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0176645_2	phrog_706	130.3	1.4e-38	N/A	unknown function
UniRef90	UHGV-0176645_2	UniRef90_UPI00051C36A4	191.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0176645_2	1449050.JNLE01000003_gene3882	190.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0176645_2	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0176645_2	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0176645_3	phrog_11299	65.2	1.2e-18	N/A	unknown function
structural_annotation	UHGV-0176645_3	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0176645_5	phrog_581	112.4	4e-33	minor head protein	head and packaging
UniRef90	UHGV-0176645_5	UniRef90_R6R6H1	177.0	0	Ntox50 domain-containing protein	N/A
eggNOG-mapper	UHGV-0176645_5	658655.HMPREF0988_02563	148.0	8.04e-37	Phage minor capsid protein 2	N/A
Pfam	UHGV-0176645_5	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0176645_5	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0176645_6	phrog_3099	70.3	3.5e-20	N/A	unknown function
eggNOG-mapper	UHGV-0176645_6	665956.HMPREF1032_03060	110.0	4.13e-28	N/A	N/A
structural_annotation	UHGV-0176645_6	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0176645_7	phrog_3266	71.6	2.4e-21	tail completion	connector
eggNOG-mapper	UHGV-0176645_7	1449050.JNLE01000003_gene3885	105.0	1.93e-27	N/A	N/A
structural_annotation	UHGV-0176645_7	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0176645_8	phrog_556	113.2	1.4e-33	minor head protein	head and packaging
UniRef90	UHGV-0176645_8	UniRef90_UPI000691B8FF	149.0	9.10844e-44	minor capsid protein	N/A
eggNOG-mapper	UHGV-0176645_8	1449050.JNLE01000003_gene3886	149.0	1.54143e-44	N/A	N/A
Pfam	UHGV-0176645_8	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0176645_8	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0176645_9	phrog_3366	59.0	4.2e-18	N/A	unknown function
eggNOG-mapper	UHGV-0176645_9	1449050.JNLE01000003_gene3887	76.3	4.47e-16	N/A	N/A
Pfam	UHGV-0176645_9	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0176645_9	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0176645_10	phrog_541	79.6	3.9e-23	head-tail adaptor	connector
eggNOG-mapper	UHGV-0176645_10	1449050.JNLE01000003_gene3888	93.2	7.6e-23	N/A	N/A
PHROG	UHGV-0176645_11	phrog_544	285.3	0	major head protein	head and packaging
UniRef90	UHGV-0176645_11	UniRef90_UPI000F53CC4F	478.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0176645_11	411490.ANACAC_00777	335.0	0	N/A	N/A
NCBIFam	UHGV-0176645_11	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0176645_11	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0176645_12	phrog_194	54.2	0.0000000000000032	head scaffolding protein	head and packaging
UniRef90	UHGV-0176645_12	UniRef90_R7FEY9	98.6	8.04e-23	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0176645_12	411473.RUMCAL_01929	98.6	1.35e-23	Phage minor structural protein GP20	N/A
Pfam	UHGV-0176645_12	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0176645_12	PF06810,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0176645_14	phrog_581	206.2	0	minor head protein	head and packaging
UniRef90	UHGV-0176645_14	UniRef90_UPI001897AC3D	310.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0176645_14	658655.HMPREF0988_02563	232.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0176645_14	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0176645_14	COG2369	N/A	N/A	N/A	N/A
KOfam	UHGV-0176645_15	K07481	320.6	0	K07481; transposase, IS5 family	N/A
PHROG	UHGV-0176645_15	phrog_3598	368.2	0	transposase	integration and excision
UniRef90	UHGV-0176645_15	UniRef90_UPI001D0130A9	613.0	0	IS5 family transposase	N/A
eggNOG-mapper	UHGV-0176645_15	1519439.JPJG01000012_gene172	474.0	0	Transposase DDE domain	N/A
Pfam	UHGV-0176645_15	PF05598	N/A	N/A	N/A	DUF772
Pfam	UHGV-0176645_15	PF01609	N/A	N/A	Transposase DDE domain	DDE_Tnp_1
NCBIFam	UHGV-0176645_15	NF033581.1	N/A	N/A	IS5 family transposase	N/A
COG	UHGV-0176645_15	COG3039	N/A	N/A	Transposase and inactivated derivatives, IS5 family	N/A
structural_annotation	UHGV-0176645_15	PF01609,PF05598,NF033581,COG5558	N/A	N/A	N/A	N/A
KOfam	UHGV-0176645_16	K05785	60.6	2.6e-17	rfaH; transcriptional antiterminator RfaH	N/A
PHROG	UHGV-0176645_16	phrog_6386	87.8	1.3e-25	transcription antiterminator	transcription regulation
UniRef90	UHGV-0176645_16	UniRef90_U2K8B7	79.3	0.00000000000000104	Transcription termination/antitermination factor NusG	N/A
eggNOG-mapper	UHGV-0176645_16	411473.RUMCAL_01920	79.3	1.75e-16	Transcription termination factor nusG	N/A
Pfam	UHGV-0176645_16	PF02357	N/A	N/A	Transcription termination factor nusG	NusG
COG	UHGV-0176645_16	COG0250	N/A	N/A	Transcription termination/antitermination protein NusG	N/A
structural_annotation	UHGV-0176645_16	PF02357,MF_00951,NF033641,COG0250	N/A	N/A	N/A	N/A
PHROG	UHGV-0176645_17	phrog_426	101.1	1.5e-29	terminase small subunit	head and packaging
UniRef90	UHGV-0176645_17	UniRef90_UPI000F520548	175.0	0	N/A	N/A
eggNOG-mapper	UHGV-0176645_17	411473.RUMCAL_01919	195.0	0	N/A	N/A
Pfam	UHGV-0176645_17	PF11985	N/A	N/A	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
structural_annotation	UHGV-0176645_17	PF11985	N/A	N/A	N/A	N/A
PHROG	UHGV-0176645_18	phrog_25462	116.0	1.8e-34	N/A	unknown function
UniRef90	UHGV-0176645_18	UniRef90_A0A349GP70	194.0	0	Type VI secretion protein	N/A
eggNOG-mapper	UHGV-0176645_18	1160721.RBI_II00547	119.0	1.4e-33	N/A	N/A
structural_annotation	UHGV-0176645_18	PF01638,MF_01819,NF002926,COG1733	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0176645_19	1160721.RBI_II00548	65.1	0.000000000000843	N/A	N/A
PHROG	UHGV-0176645_20	phrog_532	55.8	9.9e-16	late transcriptional activator	transcription regulation
UniRef90	UHGV-0176645_20	UniRef90_E6U5Z5	86.7	3.36e-20	Mor transcription activator domain protein	N/A
eggNOG-mapper	UHGV-0176645_20	663278.Ethha_0084	86.7	5.64e-21	Mor transcription activator	N/A
Pfam	UHGV-0176645_20	PF08765	N/A	N/A	Mor transcription activator family	Mor
COG	UHGV-0176645_20	COG5566	N/A	N/A	Transcriptional regulator, middle operon regulator (Mor) family	N/A
structural_annotation	UHGV-0176645_20	PF08765,NF040785,COG5566	N/A	N/A	N/A	N/A
PHROG	UHGV-0176645_21	phrog_286	54.4	0.0000000000000031	N/A	unknown function
UniRef90	UHGV-0176645_21	UniRef90_R6VAP3	102.0	1.19e-24	Voltage-dependent P/Q-type calcium channel subunit alpha-1A	N/A
eggNOG-mapper	UHGV-0176645_21	411473.RUMCAL_01915	100.0	1.36e-24	N/A	N/A
Pfam	UHGV-0176645_21	PF06252	N/A	N/A	Bacteriophage Mu, GemA protein	GemA
structural_annotation	UHGV-0176645_21	PF06252	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0176645_24	1160721.RBI_II00551	90.5	1.67e-19	N/A	N/A
UniRef90	UHGV-0176645_26	UniRef90_UPI0016510692	73.2	9.52e-16	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0176645_26	1430331.EP10_02425	54.7	0.00000000366	N/A	N/A
structural_annotation	UHGV-0176645_26	PF05339,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0176645_29	K07132	76.3	4.4e-22	MuB; ATP-dependent target DNA activator	N/A
PHROG	UHGV-0176645_29	phrog_296	125.6	5.5e-37	DNA transposition protein	integration and excision
UniRef90	UHGV-0176645_29	UniRef90_A0A355UY35	359.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0176645_29	411473.RUMCAL_01909	346.0	0	AAA domain	N/A
Pfam	UHGV-0176645_29	PF13401	N/A	N/A	AAA domain	AAA_22
COG	UHGV-0176645_29	COG2842	N/A	N/A	Bacteriophage DNA transposition protein, AAA+ family ATPase	N/A
structural_annotation	UHGV-0176645_29	PF13401,MF_01407,TIGR03015,COG2842	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0176645_31	1160721.RBI_II00555	54.7	0.0000000807	Mu transposase, C-terminal	N/A
COG	UHGV-0176645_31	COG2801	N/A	N/A	Transposase InsO and inactivated derivatives	N/A
UniRef90	UHGV-0176645_34	UniRef90_UPI0018ECC1A4	73.2	0.00000000000000209	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0176645_34	658086.HMPREF0994_04275	49.7	0.000000843	N/A	N/A
Pfam	UHGV-0176645_34	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0176645_34	PF01381,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0176645_35	K22300	57.7	2.8e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0176645_35	phrog_8	66.9	3.9e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0176645_35	UniRef90_A0A6S6QYT4	98.6	4.34e-24	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0176645_35	97138.C820_00275	87.0	3.92e-20	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0176645_35	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0176645_35	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0176645_35	PF12844,MF_00535,NF007257,COG3655	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0176645	Yes	18,228	40	52	1