vOTU vOTU-140258

vOTU: vOTU-140258

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-140258
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-03745 → vOTU-140258
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Frisingicoccus → Frisingicoccus sp900549105
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0065013
Biosample ID	N/A
Genome length (bp)	20,179 bps
CheckV completeness	56.54% (Medium-quality)
CDS count	27
CDS density	93.25%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage		Total connections		Host agreement
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Frisingicoccus → Frisingicoccus sp900549105	Total connections	4	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 56.54)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0065013_1	411459.RUMOBE_03675	65.1	0.00000000000515	N/A	N/A
KOfam	UHGV-0065013_2	K03704	117.3	1.6e-34	cspA; cold shock protein	N/A
PHROG	UHGV-0065013_2	phrog_729	80.1	2.6e-23	cold shock protein	other
UniRef90	UHGV-0065013_2	UniRef90_C6LAK5	130.0	2.57e-38	Cold-shock DNA-binding domain protein	N/A
eggNOG-mapper	UHGV-0065013_2	537007.BLAHAN_06236	135.0	4.41003e-41	N/A	N/A
PADLOC	UHGV-0065013_2	retron_type_V_csd_cluster85_1	57.3	3.7e-16	N/A	Retron
Pfam	UHGV-0065013_2	PF00313	N/A	N/A	'Cold-shock' DNA-binding domain	CSD
COG	UHGV-0065013_2	COG1278	N/A	N/A	Cold shock protein, CspA family	N/A
structural_annotation	UHGV-0065013_2	PF00313,NF007062,COG1278	N/A	N/A	N/A	N/A
PHROG	UHGV-0065013_4	phrog_309	189.3	0	terminase small subunit	head and packaging
UniRef90	UHGV-0065013_4	UniRef90_A0A7V7QJ14	221.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0065013_4	357809.Cphy_2972	255.0	0	transposase activity	N/A
Pfam	UHGV-0065013_4	PF01527	N/A	N/A	Transposase	HTH_Tnp_1
COG	UHGV-0065013_4	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0065013_4	PF07141	N/A	N/A	N/A	N/A
PHROG	UHGV-0065013_5	phrog_38	147.3	9.24857e-44	terminase large subunit	head and packaging
UniRef90	UHGV-0065013_5	UniRef90_UPI00046F67CE	674.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0065013_5	1235792.C808_05331	690.0	0	N/A	N/A
structural_annotation	UHGV-0065013_5	PF17289,PF05876,MF_04147,NF033889,COG5323	N/A	N/A	N/A	N/A
PHROG	UHGV-0065013_6	phrog_64	397.7	0	portal protein	head and packaging
UniRef90	UHGV-0065013_6	UniRef90_R9JSE7	700.0	0	SPP1 family phage portal protein	N/A
eggNOG-mapper	UHGV-0065013_6	1235792.C808_05332	700.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0065013_6	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0065013_6	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0065013_6	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0065013_7	phrog_115	250.7	0	minor head protein	head and packaging
UniRef90	UHGV-0065013_7	UniRef90_UPI001AA1BAE0	471.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0065013_7	1235792.C808_05333	466.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-0065013_7	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0065013_7	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0065013_7	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0065013_7	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0065013_8	PF11344	N/A	N/A	N/A	N/A
PHROG	UHGV-0065013_9	phrog_1233	59.1	8.9e-17	N/A	unknown function
UniRef90	UHGV-0065013_9	UniRef90_A0A855HLY8	140.0	1.98003e-41	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-0065013_9	476272.RUMHYD_02850	138.0	2.42004e-41	N/A	N/A
Pfam	UHGV-0065013_9	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
structural_annotation	UHGV-0065013_9	PF06114	N/A	N/A	N/A	N/A
KOfam	UHGV-0065013_10	K03672	42.8	0.00000000001	trxC; thioredoxin 2 [EC:1.8.1.8]	N/A
UniRef90	UHGV-0065013_10	UniRef90_A0A7G5MY60	127.0	7.88e-37	Thioredoxin	N/A
eggNOG-mapper	UHGV-0065013_10	2002.JOEQ01000037_gene4264	58.5	0.00000000124	Thioredoxin	N/A
Pfam	UHGV-0065013_10	PF00085	N/A	N/A	Thioredoxin	Thioredoxin
COG	UHGV-0065013_10	COG3118	N/A	N/A	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	N/A
structural_annotation	UHGV-0065013_10	PF00085,MF_01835,TIGR01068,COG0526	N/A	N/A	N/A	N/A
KOfam	UHGV-0065013_11	K07584	80.6	2.4e-23	N/A	N/A
PHROG	UHGV-0065013_11	phrog_4478	88.3	5.9e-26	peptidase	other
UniRef90	UHGV-0065013_11	UniRef90_UPI000D6B6F7F	119.0	2.51e-33	ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0065013_11	1235798.C817_03478	114.0	5.71e-32	Pfam:Peptidase_C108	N/A
Pfam	UHGV-0065013_11	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0065013_11	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0065013_11	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0065013_12	phrog_172	158.5	0	head scaffolding protein	head and packaging
UniRef90	UHGV-0065013_12	UniRef90_A0A7X5EJ24	207.0	0	N/A	N/A
eggNOG-mapper	UHGV-0065013_12	476272.RUMHYD_02853	223.0	0	N/A	N/A
Pfam	UHGV-0065013_12	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0065013_12	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0065013_13	phrog_544	174.8	0	major head protein	head and packaging
eggNOG-mapper	UHGV-0065013_13	476272.RUMHYD_02854	317.0	0	N/A	N/A
structural_annotation	UHGV-0065013_13	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0065013_14	phrog_132	62.3	7.9e-18	head-tail adaptor	connector
UniRef90	UHGV-0065013_14	UniRef90_UPI001CF82054	124.0	1.21e-34	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0065013_14	1235792.C808_05341	150.0	0	N/A	N/A
Pfam	UHGV-0065013_14	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0065013_14	PF05135	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0065013_15	272558.10176148	53.5	0.000000101	N/A	N/A
structural_annotation	UHGV-0065013_15	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0065013_16	UniRef90_UPI00085C141C	158.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0065013_16	1235792.C808_05343	191.0	0	N/A	N/A
structural_annotation	UHGV-0065013_16	PF17395,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0065013_17	phrog_176	70.1	3.2e-20	tail terminator	connector
UniRef90	UHGV-0065013_17	UniRef90_A0A7X5EGP2	219.0	0	N/A	N/A
eggNOG-mapper	UHGV-0065013_17	1235792.C808_05344	229.0	0	N/A	N/A
Pfam	UHGV-0065013_17	PF16807	N/A	N/A	N/A	DUF5072
structural_annotation	UHGV-0065013_17	PF16807,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0065013_18	phrog_1407	162.1	0	major tail protein	tail
UniRef90	UHGV-0065013_18	UniRef90_A0A7G5N370	266.0	0	Phage major tail protein, TP901-1 family	N/A
eggNOG-mapper	UHGV-0065013_18	1235792.C808_05345	254.0	0	Phage tail tube protein	N/A
Pfam	UHGV-0065013_18	PF06199	N/A	N/A	Phage tail tube protein	Phage_tail_2
NCBIFam	UHGV-0065013_18	TIGR02126.1	N/A	N/A	phage major tail protein, TP901-1 family	N/A
COG	UHGV-0065013_18	COG5437	N/A	N/A	Phage tail protein, TP901-1 family	N/A
structural_annotation	UHGV-0065013_18	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0065013_19	phrog_2115	40.7	0.000000000053	tail protein	tail
UniRef90	UHGV-0065013_19	UniRef90_C5WIA0	64.3	0.0000000000306	N/A	N/A
eggNOG-mapper	UHGV-0065013_19	1235792.C808_05346	161.0	0	N/A	N/A
structural_annotation	UHGV-0065013_19	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0065013_20	phrog_7423	152.9	0	N/A	unknown function
UniRef90	UHGV-0065013_20	UniRef90_A0A7Z8ZWF9	131.0	3.15e-36	N/A	N/A
eggNOG-mapper	UHGV-0065013_20	1235792.C808_05347	155.0	0	N/A	N/A
PHROG	UHGV-0065013_21	phrog_3981	169.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0065013_21	UniRef90_UPI00193AACA2	385.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0065013_21	1280689.AUJC01000011_gene1530	285.0	0	tape measure	N/A
NCBIFam	UHGV-0065013_21	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0065013_21	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
structural_annotation	UHGV-0065013_21	PF20155,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0065013_22	phrog_33	72.1	1.2e-20	distal tail protein Dit	tail
UniRef90	UHGV-0065013_22	UniRef90_A0A412AXU0	254.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0065013_22	1235798.C817_04593	161.0	0	phage tail	N/A
COG	UHGV-0065013_22	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0065013_22	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0065013_23	phrog_13289	429.6	0	tail protein	tail
UniRef90	UHGV-0065013_23	UniRef90_A0A412C574	674.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0065013_23	1235798.C817_02568	473.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0065013_23	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0065013_23	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0065013_23	COG2885	N/A	N/A	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	N/A
structural_annotation	UHGV-0065013_23	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0065013_24	phrog_11037	103.8	2.5e-30	N/A	unknown function
UniRef90	UHGV-0065013_24	UniRef90_A0A174CDT6	110.0	8.79e-24	Bacteriophage peptidoglycan hydrolase	N/A
eggNOG-mapper	UHGV-0065013_24	1235796.C815_01287	113.0	1.18e-25	pathogenesis	N/A
Pfam	UHGV-0065013_24	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0065013_24	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-0065013_24	COG3942	N/A	N/A	Surface antigen	N/A
structural_annotation	UHGV-0065013_24	PF18013,PF00877,NF006360,COG3942	N/A	N/A	N/A	N/A
UniRef90	UHGV-0065013_25	UniRef90_A0A374E9Q0	100.0	1.05e-21	Collagen-like protein	N/A
eggNOG-mapper	UHGV-0065013_25	563192.HMPREF0179_00194	55.8	0.00000362	N/A	N/A
KOfam	UHGV-0065013_27	K03733	232.7	0	xerC; integrase/recombinase XerC	N/A
PHROG	UHGV-0065013_27	phrog_1	169.2	0	integrase	integration and excision
UniRef90	UHGV-0065013_27	UniRef90_A0A7U9RVH1	332.0	0	Tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-0065013_27	1235793.C809_01951	342.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0065013_27	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0065013_27	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0065013_27	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0065013_27	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0065013	Yes	20,179	43	57	1