vOTU vOTU-140293

vOTU: vOTU-140293

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-140293
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00087 → vSUBFAM-00289 → vGENUS-01322 → vOTU-140293
Host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-138 → SFEL01 → SFEL01 sp004557245
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0163441
Biosample ID	N/A
Genome length (bp)	30,206 bps
CheckV completeness	67.87% (Medium-quality)
CDS count	64
CDS density	90.93%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-138 → SFEL01 → SFEL01 sp004557245	Total connections	646	Host agreement	92.72
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-138	Total connections	8	Host agreement	75

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 67.87)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0163441_1	K19721	202.3	0	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	N/A
PHROG	UHGV-0163441_1	phrog_6320	125.6	0	tail fiber protein	tail
eggNOG-mapper	UHGV-0163441_1	1519439.JPJG01000060_gene1892	83.6	0.000000000000104	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-0163441_1	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0163441_1	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
Pfam	UHGV-0163441_3	PF21722	N/A	N/A	Glycine-rich domain	Gly_rich_2
Pfam	UHGV-0163441_5	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0163441_5	PF14600,COG3979	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0163441_6	PF12988	N/A	N/A	N/A	N/A
KOfam	UHGV-0163441_7	K19303	55.5	0.0000000000000013	mepH; murein DD-endopeptidase [EC:3.4.-.-]	N/A
PHROG	UHGV-0163441_7	phrog_329	50.2	0.0000000000000092	minor tail protein	tail
UniRef90	UHGV-0163441_7	UniRef90_A0A2V2EEK9	193.0	0	NlpC/P60 domain-containing protein	N/A
eggNOG-mapper	UHGV-0163441_7	755731.Clo1100_1179	93.2	6.2e-20	cysteine-type peptidase activity	N/A
Pfam	UHGV-0163441_7	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0163441_7	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0163441_7	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0163441_7	PF00877,PF01471,NF033743,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0163441_8	phrog_1863	51.9	0.0000000000000085	N/A	unknown function
UniRef90	UHGV-0163441_8	UniRef90_A0A7X2Z1D1	88.2	8.05e-21	t-SNARE coiled-coil homology domain-containing protein	N/A
eggNOG-mapper	UHGV-0163441_8	1122918.KB907250_gene3599	86.7	5.47e-21	N/A	N/A
PHROG	UHGV-0163441_9	phrog_881	82.5	3e-24	holin	lysis
UniRef90	UHGV-0163441_9	UniRef90_A0A4Q7P349	103.0	9.1e-28	Dp-1 family holin	N/A
eggNOG-mapper	UHGV-0163441_9	742740.HMPREF9474_02251	101.0	9.59e-28	Putative phage holin Dp-1	N/A
Pfam	UHGV-0163441_9	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0163441_9	PF16938	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0163441_12	658655.HMPREF0988_00917	55.5	0.00000117	N/A	N/A
eggNOG-mapper	UHGV-0163441_13	658655.HMPREF0988_00916	161.0	0	N/A	N/A
KOfam	UHGV-0163441_15	K14059	243.7	0	int; integrase	N/A
PHROG	UHGV-0163441_15	phrog_1	209.5	0	integrase	integration and excision
UniRef90	UHGV-0163441_15	UniRef90_UPI001C0F402D	161.0	1.69978e-42	site-specific integrase	N/A
eggNOG-mapper	UHGV-0163441_15	643648.Slip_1975	153.0	1.91e-40	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0163441_15	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0163441_15	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0163441_15	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0163441_15	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0163441_16	UniRef90_UPI001C0BCE5D	53.5	0.00000121	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0163441_16	1408322.JHYK01000019_gene245	53.1	0.00000205	Putative restriction endonuclease	N/A
Pfam	UHGV-0163441_16	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0163441_16	COG4636	N/A	N/A	Endonuclease, Uma2 family (restriction endonuclease fold)	N/A
structural_annotation	UHGV-0163441_16	PF13560,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0163441_17	phrog_2967	67.1	3.3e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0163441_17	UniRef90_UPI001C10E005	127.0	1.57e-35	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0163441_17	411469.EUBHAL_01994	117.0	4.38e-32	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0163441_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0163441_17	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
KOfam	UHGV-0163441_18	K22299	49.8	0.000000000000077	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0163441_18	phrog_3	41.8	0.000000000043	transcriptional repressor	transcription regulation
UniRef90	UHGV-0163441_18	UniRef90_A0A2A2IKI2	90.5	1.28e-22	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0163441_18	936375.HMPREF1152_1045	77.0	5.04e-18	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0163441_18	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0163441_18	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0163441_18	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0163441_21	phrog_757	242.7	0	DNA methyltransferase	other
UniRef90	UHGV-0163441_21	UniRef90_UPI0006A41431	327.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0163441_21	1235790.C805_00032	284.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0163441_21	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0163441_21	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0163441_22	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0163441_26	phrog_253	132.6	2.4e-39	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0163441_26	UniRef90_UPI00189A2233	133.0	1.07e-36	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0163441_26	903814.ELI_1272	98.6	9.35e-24	Siphovirus Gp157	N/A
Pfam	UHGV-0163441_26	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0163441_26	PF05565,NF002139	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0163441_27	1041142.ATTP01000043_gene5324	59.7	0.0000000843	N/A	N/A
PHROG	UHGV-0163441_28	phrog_1389	72.3	6.8e-21	N/A	unknown function
eggNOG-mapper	UHGV-0163441_28	1280692.AUJL01000025_gene2094	73.9	0.0000000000000015	N/A	N/A
structural_annotation	UHGV-0163441_28	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
KOfam	UHGV-0163441_29	K07451	44.1	0.0000000000039	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0163441_29	phrog_7370	64.1	2e-18	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0163441_29	UniRef90_A0A498CPV0	130.0	2.15e-37	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0163441_29	445972.ANACOL_01826	101.0	7.88e-27	HNH nucleases	N/A
Pfam	UHGV-0163441_29	PF01844	N/A	N/A	HNH endonuclease	HNH
KOfam	UHGV-0163441_30	K03111	154.1	1.4013e-45	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0163441_30	phrog_44	133.3	1.7e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0163441_30	UniRef90_A0A316PZZ8	170.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0163441_30	1042163.BRLA_c046430	134.0	1.3e-38	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0163441_30	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0163441_30	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0163441_30	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0163441_30	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0163441_30	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
COG	UHGV-0163441_31	COG4443	N/A	N/A	N/A	N/A
PHROG	UHGV-0163441_32	phrog_15768	119.0	5.7e-36	N/A	unknown function
UniRef90	UHGV-0163441_32	UniRef90_A0A6N7WKT0	115.0	2.57e-28	N/A	N/A
eggNOG-mapper	UHGV-0163441_32	203119.Cthe_2466	97.1	4.66e-21	N/A	N/A
AcrCatalog	UHGV-0163441_32	cluster_38323	86.7	1.22e-22	NA	N/A
Pfam	UHGV-0163441_32	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0163441_32	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0163441_33	K02314	402.1	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0163441_33	phrog_19	303.3	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0163441_33	UniRef90_A0A1C6FK91	265.0	0	Replicative DNA helicase	N/A
eggNOG-mapper	UHGV-0163441_33	1347392.CCEZ01000011_gene2447	258.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0163441_33	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0163441_33	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0163441_33	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0163441_33	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0163441_35	phrog_244	84.0	2.3e-24	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0163441_35	742740.HMPREF9474_03491	125.0	1.13e-35	N/A	N/A
structural_annotation	UHGV-0163441_35	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-0163441_38	phrog_2245	69.7	4.7e-20	nucleoside triphosphate pyrophosphohydrolase	other
PHROG	UHGV-0163441_40	phrog_1233	69.6	5.1e-20	N/A	unknown function
UniRef90	UHGV-0163441_40	UniRef90_UPI000BF2C991	65.1	0.0000000000209	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0163441_40	1131462.DCF50_p1813	67.4	0.000000000000461	N/A	N/A
eggNOG-mapper	UHGV-0163441_41	411470.RUMGNA_02189	53.5	0.00000129	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
COG	UHGV-0163441_41	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
UniRef90	UHGV-0163441_48	UniRef90_A0A8D9PDK2	58.9	0.00000000247	Zinc-ribbon containing domain	N/A
PHROG	UHGV-0163441_50	phrog_13321	60.9	1.4e-18	N/A	unknown function
UniRef90	UHGV-0163441_50	UniRef90_UPI00030D2C45	295.0	0	radical SAM protein	N/A
eggNOG-mapper	UHGV-0163441_50	1235797.C816_03559	310.0	0	PFAM Radical SAM	N/A
Pfam	UHGV-0163441_50	PF04055	N/A	N/A	Radical SAM superfamily	Radical_SAM
COG	UHGV-0163441_50	COG1533	N/A	N/A	DNA repair photolyase	N/A
structural_annotation	UHGV-0163441_50	PF20903,MF_00917,NF033668,COG4422	N/A	N/A	N/A	N/A
PHROG	UHGV-0163441_51	phrog_2118	98.7	7.5e-29	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0163441_51	UniRef90_A0A413YU08	131.0	7.25e-37	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0163441_51	1007096.BAGW01000031_gene126	129.0	4.59e-37	HNH endonuclease	N/A
Pfam	UHGV-0163441_51	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0163441_51	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0163441_51	COG1403	N/A	N/A	N/A	N/A
Pfam	UHGV-0163441_52	PF20037	N/A	N/A	N/A	DUF6440
structural_annotation	UHGV-0163441_52	PF20037	N/A	N/A	N/A	N/A
KOfam	UHGV-0163441_53	K22300	45.8	0.0000000000013	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0163441_53	phrog_8	56.6	6.7e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0163441_53	UniRef90_UPI000C081F44	62.0	0.0000000000265	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0163441_53	1123405.AUMM01000019_gene2881	53.1	0.000000043	sequence-specific DNA binding	N/A
Pfam	UHGV-0163441_53	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0163441_53	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0163441_54	PF05263,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0163441_55	phrog_10993	55.1	0.0000000000000012	Hoc-like head decoration	head and packaging
Pfam	UHGV-0163441_55	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0163441_55	PF19789	N/A	N/A	N/A	N/A
UniRef90	UHGV-0163441_56	UniRef90_J9CYX8	75.1	3.96e-16	DNA modification methylase	N/A
eggNOG-mapper	UHGV-0163441_56	1268240.ATFI01000007_gene431	88.2	1.5e-20	DNA methylase	N/A
COG	UHGV-0163441_56	COG0863	N/A	N/A	DNA modification methylase	N/A
KOfam	UHGV-0163441_57	K07319	63.7	3.2e-18	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0163441_57	phrog_67	62.1	1.1e-17	DNA methyltransferase	other
UniRef90	UHGV-0163441_57	UniRef90_A0A3D0M2C3	144.0	2.18995e-41	Methyltransferase	N/A
eggNOG-mapper	UHGV-0163441_57	1123304.AQYA01000037_gene207	107.0	2.33e-27	DNA methylase	N/A
PADLOC	UHGV-0163441_57	MTase_II_00172	82.0	1.5e-23	Type II methyltransferase	RM
Pfam	UHGV-0163441_57	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0163441_57	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0163441_57	PF01170	N/A	N/A	N/A	N/A
KOfam	UHGV-0163441_58	K07741	123.6	3.5e-36	antB; anti-repressor protein	N/A
PHROG	UHGV-0163441_58	phrog_130	266.1	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0163441_58	UniRef90_UPI000C81B5C4	317.0	0	phage antirepressor	N/A
eggNOG-mapper	UHGV-0163441_58	883077.HMPREF9241_01671	288.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0163441_58	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0163441_58	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0163441_58	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0163441_58	PF03374,PF02498,TIGR02681,COG3617,COG3645	N/A	N/A	N/A	N/A
PHROG	UHGV-0163441_59	phrog_13126	337.3	0	beta-1,4-glycosyltransferase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0163441_59	UniRef90_A0A1Q6Q8L1	354.0	0	Glycosyl transferase family 2	N/A
eggNOG-mapper	UHGV-0163441_59	1226322.HMPREF1545_03849	341.0	0	Glycosyl transferase, family 2	N/A
Pfam	UHGV-0163441_59	PF00535	N/A	N/A	Glycosyl transferase family 2	Glycos_transf_2
Pfam	UHGV-0163441_59	PF14559	N/A	N/A	Tetratricopeptide repeat	TPR_19
Pfam	UHGV-0163441_59	PF07719	N/A	N/A	Tetratricopeptide repeat	TPR_2
COG	UHGV-0163441_59	COG0463	N/A	N/A	Glycosyltransferase involved in cell wall bisynthesis	N/A
structural_annotation	UHGV-0163441_59	PF18768,PF13641,MF_00994,MF_00316,TIGR04195,COG0457,COG0463	N/A	N/A	N/A	N/A
PHROG	UHGV-0163441_60	phrog_13890	45.1	0.0000000000014	N/A	unknown function
Pfam	UHGV-0163441_61	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
structural_annotation	UHGV-0163441_61	PF21291,TIGR02607,COG3093	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0163441	Yes	30,206	50	68	1