vOTU vOTU-140299

vOTU: vOTU-140299

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-140299
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Hungatella → Hungatella sp005845265
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00560 → vGENUS-15162 → vOTU-140299
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Hungatella → Hungatella sp005845265
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1292695
Biosample ID	SAMN03659380
Genome length (bp)	29,204 bps
CheckV completeness	73.06% (Medium-quality)
CDS count	44
CDS density	89.36%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Hungatella → Hungatella sp005845265	Total connections	143	Host agreement	97.9
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Hungatella → Hungatella sp005845265	Total connections	15	Host agreement	80

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 73.06)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1292695_1	phrog_58	147.9	0	tail length tape measure protein	tail
UniRef90	UHGV-1292695_1	UniRef90_A0A2T3F007	513.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1292695_1	1134413.ANNK01000119_gene2442	103.0	6.16e-20	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-1292695_1	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-1292695_2	phrog_33	81.0	2.5e-23	distal tail protein Dit	tail
UniRef90	UHGV-1292695_2	UniRef90_A0A413WS74	470.0	0	MtfA protein	N/A
eggNOG-mapper	UHGV-1292695_2	411490.ANACAC_00709	198.0	0	phage tail	N/A
Pfam	UHGV-1292695_2	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-1292695_2	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-1292695_2	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1292695_2	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1292695_3	phrog_3558	383.4	0	tail protein	tail
UniRef90	UHGV-1292695_3	UniRef90_A0A413LD37	1286.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1292695_3	610130.Closa_0754	510.0	0	N/A	N/A
Pfam	UHGV-1292695_3	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1292695_3	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1292695_3	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1292695_3	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1292695_5	phrog_21765	43.5	0.0000000000044	N/A	unknown function
eggNOG-mapper	UHGV-1292695_5	1304866.K413DRAFT_1240	101.0	2.23e-24	N/A	N/A
PHROG	UHGV-1292695_6	phrog_30004	45.8	0.00000000000011	N/A	unknown function
UniRef90	UHGV-1292695_6	UniRef90_UPI00189F6B9C	187.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-1292695_6	610130.Closa_0759	163.0	5.60519e-45	N/A	N/A
structural_annotation	UHGV-1292695_6	PF14600	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1292695_7	742740.HMPREF9474_04291	135.0	3.49e-39	N/A	N/A
structural_annotation	UHGV-1292695_8	NF040910	N/A	N/A	N/A	N/A
PHROG	UHGV-1292695_9	phrog_1009	46.4	0.00000000000063	N/A	unknown function
UniRef90	UHGV-1292695_9	UniRef90_A0A3E2WI44	147.0	1.26117e-44	Branched-chain amino acid ABC transporter permease	N/A
eggNOG-mapper	UHGV-1292695_9	742740.HMPREF9474_03521	137.0	2.70002e-41	N/A	N/A
PHROG	UHGV-1292695_10	phrog_1129	70.4	1.9e-20	holin	lysis
UniRef90	UHGV-1292695_10	UniRef90_A0A2N0KEV2	138.0	9.11993e-41	Enolase	N/A
eggNOG-mapper	UHGV-1292695_10	742740.HMPREF9474_03522	132.0	1.46e-39	N/A	N/A
Pfam	UHGV-1292695_10	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1292695_10	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-1292695_11	K17733	158.1	0	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	N/A
PHROG	UHGV-1292695_11	phrog_2649	137.0	1.50001e-40	endolysin	lysis
UniRef90	UHGV-1292695_11	UniRef90_D3ADD3	537.0	0	Cell wall-binding repeat protein	N/A
eggNOG-mapper	UHGV-1292695_11	742733.HMPREF9469_01368	447.0	0	D-alanyl-D-alanine carboxypeptidase	N/A
Pfam	UHGV-1292695_11	PF13539	N/A	N/A	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
COG	UHGV-1292695_11	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A
structural_annotation	UHGV-1292695_11	PF02557,PF19127,MF_01924,NF007557,TIGR04035,COG2173	N/A	N/A	N/A	N/A
UniRef90	UHGV-1292695_12	UniRef90_D3ADC9	125.0	1.5e-36	DNA binding domain, excisionase family	N/A
eggNOG-mapper	UHGV-1292695_12	1348908.KI518584_gene1683	50.1	0.000000204	Helix-turn-helix domain	N/A
Pfam	UHGV-1292695_12	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-1292695_12	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-1292695_12	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
KOfam	UHGV-1292695_13	K03427	182.3	0	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-1292695_13	phrog_2713	102.5	3.1e-30	N/A	unknown function
UniRef90	UHGV-1292695_13	UniRef90_UPI00164D19F6	2471.0	0	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-1292695_13	484770.UFO1_4001	1064.0	0	Eco57I restriction-modification methylase	N/A
PADLOC	UHGV-1292695_13	REase_MTase_IIG_00029	601.6	0	Type IIG restriction enzyme-methyltransferase	RM
Pfam	UHGV-1292695_13	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
Pfam	UHGV-1292695_13	PF01420	N/A	N/A	Type I restriction modification DNA specificity domain	Methylase_S
COG	UHGV-1292695_13	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
KOfam	UHGV-1292695_15	K14059	159.7	0	int; integrase	N/A
PHROG	UHGV-1292695_15	phrog_1	137.4	1.4e-40	integrase	integration and excision
UniRef90	UHGV-1292695_15	UniRef90_D9R5C3	553.0	0	Integrase family protein	N/A
eggNOG-mapper	UHGV-1292695_15	610130.Closa_0703	553.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1292695_15	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
COG	UHGV-1292695_15	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1292695_15	PF00589,MF_01808,TIGR02225,NF041908,COG4974,COG3422	N/A	N/A	N/A	N/A
KOfam	UHGV-1292695_17	K18830	61.8	1.4e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1292695_17	phrog_8	58.0	2e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1292695_17	UniRef90_A0A0F0CM42	186.0	0	Transcriptional repressor DicA	N/A
eggNOG-mapper	UHGV-1292695_17	610130.Closa_0705	99.4	1.25e-24	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-1292695_17	retron_type_VI_hth_cluster2_1	43.4	0.0000000000081	N/A	Retron
Pfam	UHGV-1292695_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1292695_17	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1292695_17	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1292695_19	UniRef90_A0A413WRF7	206.0	0	DNA-binding protein	N/A
eggNOG-mapper	UHGV-1292695_19	610130.Closa_0711	57.0	0.00000000722	N/A	N/A
Pfam	UHGV-1292695_19	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-1292695_19	PF21531,TIGR01764,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-1292695_21	K07741	191.1	0	antB; anti-repressor protein	N/A
PHROG	UHGV-1292695_21	phrog_63	165.0	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1292695_21	UniRef90_A0A174WPP9	377.0	0	Phage antirepressor protein	N/A
eggNOG-mapper	UHGV-1292695_21	658655.HMPREF0988_02592	306.0	0	AntA/AntB antirepressor	N/A
Pfam	UHGV-1292695_21	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-1292695_21	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1292695_21	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-1292695_21	PF03374,PF08346,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
KOfam	UHGV-1292695_23	K19171	40.7	0.000000000000001	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-1292695_23	phrog_1499	309.1	0	N/A	unknown function
UniRef90	UHGV-1292695_23	UniRef90_D3AA93	875.0	0	AAA_23 domain-containing protein	N/A
eggNOG-mapper	UHGV-1292695_23	742733.HMPREF9469_01850	780.0	0	DNA recombination	N/A
COG	UHGV-1292695_23	COG0497	N/A	N/A	DNA repair ATPase RecN	N/A
structural_annotation	UHGV-1292695_23	PF11398,MF_00365,NF008121,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-1292695_24	phrog_561	142.4	2.7003e-42	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1292695_24	UniRef90_UPI0011C8A287	254.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-1292695_24	742733.HMPREF9469_01849	244.0	0	N/A	N/A
structural_annotation	UHGV-1292695_24	TIGR01913,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1292695_25	phrog_1227	254.5	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1292695_25	UniRef90_A0A413LUL6	534.0	0	N/A	N/A
eggNOG-mapper	UHGV-1292695_25	742733.HMPREF9469_01848	372.0	0	N/A	N/A
Pfam	UHGV-1292695_25	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-1292695_25	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-1292695_25	PF12684,TIGR01896,COG4343	N/A	N/A	N/A	N/A
PHROG	UHGV-1292695_26	phrog_7566	60.4	2.9e-17	N/A	unknown function
UniRef90	UHGV-1292695_26	UniRef90_A0A373CFM5	99.8	3.03e-25	ClpX-type ZB domain-containing protein	N/A
eggNOG-mapper	UHGV-1292695_26	1304866.K413DRAFT_3017	131.0	1.51e-38	N/A	N/A
KOfam	UHGV-1292695_27	K01160	48.6	0.00000000000023	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1292695_27	phrog_1682	74.0	2.5e-21	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1292695_27	UniRef90_A0A174WGH7	263.0	0	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-1292695_27	1304866.K413DRAFT_3018	185.0	0	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-1292695_27	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1292695_27	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1292695_28	phrog_10469	116.6	1.9e-35	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1292695_28	UniRef90_A0A174WT25	545.0	0	Replication initiator A domain-containing protein	N/A
eggNOG-mapper	UHGV-1292695_28	397291.C804_01603	186.0	0	DnaD domain protein	N/A
COG	UHGV-1292695_28	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1292695_28	PF10771,MF_01177,TIGR01714,COG0640	N/A	N/A	N/A	N/A
PHROG	UHGV-1292695_29	phrog_9804	124.6	7.6e-37	N/A	unknown function
UniRef90	UHGV-1292695_29	UniRef90_A0A174WNQ9	357.0	0	Loader and inhibitor of phage G40P	N/A
eggNOG-mapper	UHGV-1292695_29	632292.Calhy_0752	103.0	1.38e-25	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-1292695_29	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-1292695_29	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-1292695_31	K01356	43.3	0.0000000000081	lexA; repressor LexA [EC:3.4.21.88]	N/A
UniRef90	UHGV-1292695_31	UniRef90_A0A413LUD6	121.0	1.42e-34	LexA_DNA_bind domain-containing protein	N/A
eggNOG-mapper	UHGV-1292695_31	1304866.K413DRAFT_1203	75.9	1.23e-17	LexA DNA binding domain	N/A
Pfam	UHGV-1292695_31	PF01726	N/A	N/A	LexA DNA binding domain	LexA_DNA_bind
COG	UHGV-1292695_31	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
UniRef90	UHGV-1292695_32	UniRef90_A0A174WT68	136.0	6.43995e-41	ATP--guanido phosphotransferase	N/A
UniRef90	UHGV-1292695_33	UniRef90_UPI00189796FC	76.3	8.2e-17	zinc-ribbon domain-containing protein	N/A
structural_annotation	UHGV-1292695_33	PF13248	N/A	N/A	N/A	N/A
KOfam	UHGV-1292695_35	K00390	73.3	1.5e-21	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1292695_35	phrog_424	153.1	1.4013e-45	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1292695_35	UniRef90_D3AAA9	741.0	0	Phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1292695_35	1345695.CLSA_c30150	424.0	0	N/A	N/A
Pfam	UHGV-1292695_35	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1292695_35	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1292695_35	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-1292695_38	phrog_757	84.5	1.3e-24	DNA methyltransferase	other
UniRef90	UHGV-1292695_38	UniRef90_UPI001CBD79D0	85.9	2.27e-19	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1292695_38	742733.HMPREF9469_01835	101.0	1.59e-25	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1292695_38	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1292695_40	PF14192	N/A	N/A	N/A	N/A
UniRef90	UHGV-1292695_41	UniRef90_R6ZHB9	100.0	7.7e-25	Putative bacteriocin ABC transporter	N/A
eggNOG-mapper	UHGV-1292695_41	742733.HMPREF9469_02894	125.0	1.39e-35	N/A	N/A
structural_annotation	UHGV-1292695_41	PF19962,COG1579	N/A	N/A	N/A	N/A
PHROG	UHGV-1292695_42	phrog_1558	160.0	0	N/A	unknown function
UniRef90	UHGV-1292695_42	UniRef90_A0A1C7GFB4	244.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1292695_42	1163671.JAGI01000002_gene3057	192.0	0	N/A	N/A
structural_annotation	UHGV-1292695_42	PF08281,MF_00674,TIGR01636,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-1292695_43	K07474	69.1	1.5e-19	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1292695_43	phrog_2606	159.6	0	terminase small subunit	head and packaging
UniRef90	UHGV-1292695_43	UniRef90_A0A6L6L9H6	163.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1292695_43	478749.BRYFOR_07604	159.0	0	terminase, small subunit	N/A
Pfam	UHGV-1292695_43	PF10668	N/A	N/A	Phage terminase small subunit	Phage_terminase
Pfam	UHGV-1292695_43	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1292695_43	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
PHROG	UHGV-1292695_44	phrog_2606	125.8	3.8e-37	terminase small subunit	head and packaging
UniRef90	UHGV-1292695_44	UniRef90_UPI001F27A008	89.0	2.47e-19	terminase small subunit	N/A
eggNOG-mapper	UHGV-1292695_44	478749.BRYFOR_07604	143.0	5.95e-40	terminase, small subunit	N/A
Pfam	UHGV-1292695_44	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1292695_44	COG3728	N/A	N/A	Phage terminase, small subunit	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1292695	Yes	29,204	44	73	1
UHGV-1292232	No	28,812	44	72	1