vOTU vOTU-140820

vOTU: vOTU-140820

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-140820
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_B → Peptococcia → Peptococcales → Peptococcaceae → UMGS1590 → UMGS1590 sp900552455
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-06935 → vOTU-140820
Host lineage	Bacteria → Firmicutes_B → Peptococcia → Peptococcales → Peptococcaceae → UMGS1590 → UMGS1590 sp900552455
Host range breadth	Species
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0190132
Biosample ID	N/A
Genome length (bp)	29,127 bps
CheckV completeness	84.47% (Medium-quality)
CDS count	49
CDS density	91.68%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_B → Peptococcia → Peptococcales → Peptococcaceae → UMGS1590 → UMGS1590 sp900552455	Total connections	1	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_B → Peptococcia → Peptococcales → Peptococcaceae → UMGS1590 → UMGS1590 sp900552455	Total connections	7	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 84.47)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0190132_1	phrog_400	155.0	0	tail protein	tail
UniRef90	UHGV-0190132_1	UniRef90_A0A1S1V6M7	216.0	0	Murein DD-endopeptidase MepS/murein LD-carboxypeptidase	N/A
eggNOG-mapper	UHGV-0190132_1	883156.HMPREF9282_00962	119.0	9.3e-28	NLP P60 protein	N/A
COG	UHGV-0190132_1	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0190132_1	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0190132_2	phrog_380	108.6	4.8e-32	endolysin	lysis
UniRef90	UHGV-0190132_2	UniRef90_UPI0009BC4312	124.0	1.6e-31	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0190132_2	44251.PDUR_24100	105.0	9.08e-25	protein containing LysM domain	N/A
COG	UHGV-0190132_2	COG1652	N/A	N/A	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	N/A
PHROG	UHGV-0190132_3	phrog_23574	88.9	2.6e-26	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0190132_3	981383.AEWH01000014_gene3772	123.0	1.26e-26	Phage tail tape measure protein TP901	N/A
COG	UHGV-0190132_3	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-0190132_5	phrog_4976	68.9	8.8e-20	tail assembly chaperone	tail
eggNOG-mapper	UHGV-0190132_5	568816.Acin_1376	73.2	0.00000000000000649	Phage XkdN-like tail assembly chaperone protein, TAC	N/A
Pfam	UHGV-0190132_5	PF08890	N/A	N/A	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
structural_annotation	UHGV-0190132_5	PF08890	N/A	N/A	N/A	N/A
PHROG	UHGV-0190132_6	phrog_365	104.7	7e-31	tail protein	tail
UniRef90	UHGV-0190132_6	UniRef90_UPI001957E3CB	138.0	4.39e-39	phage tail tube protein	N/A
eggNOG-mapper	UHGV-0190132_6	1449126.JQKL01000051_gene3163	128.0	4.53e-36	Phage tail tube protein	N/A
Pfam	UHGV-0190132_6	PF09393	N/A	N/A	Phage tail tube protein	DUF2001
structural_annotation	UHGV-0190132_6	PF09393,TIGR02241,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0190132_7	phrog_1480	203.0	0	tail sheath	tail
UniRef90	UHGV-0190132_7	UniRef90_A0A6N9Q896	148.0	6.75e-38	Phage tail sheath protein	N/A
eggNOG-mapper	UHGV-0190132_7	1294142.CINTURNW_0297	146.0	6.04e-38	Phage tail sheath C-terminal domain	N/A
structural_annotation	UHGV-0190132_7	PF10758,COG3497	N/A	N/A	N/A	N/A
PHROG	UHGV-0190132_8	phrog_525	67.8	1.8e-19	N/A	unknown function
eggNOG-mapper	UHGV-0190132_8	1273103.NM10_01044	51.2	0.00000488	N/A	N/A
Pfam	UHGV-0190132_8	PF20765	N/A	N/A	N/A	DUF6838
PHROG	UHGV-0190132_9	phrog_5	50.2	0.000000000000065	tail completion or Neck1 protein	connector
UniRef90	UHGV-0190132_9	UniRef90_UPI000B9859F2	54.7	0.0000015	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0190132_9	203119.Cthe_2482	53.5	0.000000426	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0190132_9	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
PHROG	UHGV-0190132_10	phrog_501	49.9	0.00000000000006	head closure Hc1	connector
UniRef90	UHGV-0190132_10	UniRef90_A0A139QHM6	100.0	2.32e-25	Phage-associated protein	N/A
eggNOG-mapper	UHGV-0190132_10	748224.HMPREF9436_00693	99.0	1.45e-25	N/A	N/A
structural_annotation	UHGV-0190132_10	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0190132_11	phrog_137	115.5	2.3e-34	head-tail adaptor Ad1	connector
UniRef90	UHGV-0190132_11	UniRef90_A0A4R6QC18	178.0	0	Gp19/Gp15/Gp42-like protein	N/A
eggNOG-mapper	UHGV-0190132_11	1232446.BAIE02000011_gene1595	177.0	0	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-0190132_11	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-0190132_11	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-0190132_12	phrog_10	119.1	5e-35	major head protein	head and packaging
UniRef90	UHGV-0190132_12	UniRef90_UPI00189E3B76	300.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0190132_12	875454.BAEW01000017_gene1596	290.0	0	Phage capsid family	N/A
Pfam	UHGV-0190132_12	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0190132_12	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0190132_12	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0190132_13	phrog_233	83.8	2e-24	head scaffolding protein	head and packaging
UniRef90	UHGV-0190132_13	UniRef90_A0A890GYE3	103.0	3.97e-25	N/A	N/A
eggNOG-mapper	UHGV-0190132_13	706433.HMPREF9430_01266	100.0	1.06e-24	N/A	N/A
Pfam	UHGV-0190132_13	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0190132_13	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0190132_14	phrog_17688	317.3	0	N/A	unknown function
UniRef90	UHGV-0190132_14	UniRef90_A0A356C4T8	647.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0190132_14	936375.HMPREF1152_0677	633.0	0	phage terminase, large subunit	N/A
COG	UHGV-0190132_14	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0190132_14	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0190132_15	1410628.JNKS01000007_gene1445	170.0	0	N/A	N/A
KOfam	UHGV-0190132_16	K06926	145.8	2.39622e-43	N/A	N/A
PHROG	UHGV-0190132_16	phrog_5836	100.6	4.4e-30	N/A	unknown function
UniRef90	UHGV-0190132_16	UniRef90_A0A496N469	465.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0190132_16	877424.ATWC01000044_gene1626	325.0	0	AAA domain, putative AbiEii toxin, Type IV TA system	N/A
PADLOC	UHGV-0190132_16	AbiLi-1	115.8	6.3e-34	AbiLi	Abi
Pfam	UHGV-0190132_16	PF13304	N/A	N/A	AAA domain, putative AbiEii toxin, Type IV TA system	AAA_21
structural_annotation	UHGV-0190132_16	PF13304,MF_00365,NF041760,COG1195	N/A	N/A	N/A	N/A
PHROG	UHGV-0190132_19	phrog_2494	239.1	0	minor head protein	head and packaging
UniRef90	UHGV-0190132_19	UniRef90_S2ZHD8	200.0	0	Ntox50 domain-containing protein	N/A
eggNOG-mapper	UHGV-0190132_19	665950.HMPREF1025_02536	189.0	0	N/A	N/A
PHROG	UHGV-0190132_20	phrog_104	282.4	0	portal protein	head and packaging
UniRef90	UHGV-0190132_20	UniRef90_A0A1C5Y923	563.0	0	Phage portal protein, SPP1 Gp6-like	N/A
eggNOG-mapper	UHGV-0190132_20	665950.HMPREF1025_02537	561.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-0190132_20	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0190132_22	phrog_338	103.3	3e-30	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0190132_22	UniRef90_A0A564SBG0	167.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0190132_22	1280698.AUJS01000007_gene1032	157.0	0	HNH endonuclease domain protein	N/A
Pfam	UHGV-0190132_22	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0190132_22	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0190132_22	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0190132_23	phrog_36	87.2	2.2e-25	transcriptional regulator	transcription regulation
UniRef90	UHGV-0190132_23	UniRef90_A0A7I8D1K2	70.5	0.000000000000826	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0190132_23	1232428.CAVO010000003_gene1014	67.4	0.00000000000268	N/A	N/A
Pfam	UHGV-0190132_23	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-0190132_23	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-0190132_24	phrog_229	52.7	0.0000000000000078	MazG-like pyrophosphatase	other
UniRef90	UHGV-0190132_24	UniRef90_E3SKL3	53.9	0.00000132	Pyrophosphatase	N/A
COG	UHGV-0190132_24	COG1694	N/A	N/A	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	N/A
KOfam	UHGV-0190132_25	K03111	123.9	2.1e-36	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0190132_25	phrog_44	127.7	9e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0190132_25	UniRef90_A0A1W1VQW5	127.0	2.87e-35	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0190132_25	635013.TherJR_2978	116.0	9e-32	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0190132_25	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0190132_25	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0190132_25	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0190132_25	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0190132_25	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0190132_26	phrog_190	80.7	1.9e-23	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0190132_26	UniRef90_UPI000CF8C1EE	86.7	3.05e-20	N/A	N/A
eggNOG-mapper	UHGV-0190132_26	525255.HMPREF0077_0413	82.8	1.73e-19	N/A	N/A
Pfam	UHGV-0190132_26	PF06356	N/A	N/A	N/A	DUF1064
PHROG	UHGV-0190132_29	phrog_16304	77.6	1.6e-22	N/A	unknown function
Pfam	UHGV-0190132_29	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0190132_29	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-0190132_30	phrog_478	128.6	2.2e-38	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0190132_30	UniRef90_A0A0U2WUA4	167.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0190132_30	665956.HMPREF1032_03082	175.0	0	N/A	N/A
PHROG	UHGV-0190132_33	phrog_22543	41.1	0.000000000012	N/A	unknown function
PHROG	UHGV-0190132_35	phrog_659	209.2	0	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0190132_35	UniRef90_A0A843HUJ5	225.0	0	N/A	N/A
eggNOG-mapper	UHGV-0190132_35	1507.HMPREF0262_00431	214.0	0	N/A	N/A
Pfam	UHGV-0190132_35	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0190132_35	PF06378,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0190132_37	phrog_2205	137.8	4.19997e-41	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0190132_37	UniRef90_A0A4U9RDS0	95.9	1.14e-21	N/A	N/A
eggNOG-mapper	UHGV-0190132_37	1567014.A0A0A7S0G6_9VIRU	103.0	2.09e-25	DNA protection	N/A
Pfam	UHGV-0190132_37	PF07352	N/A	N/A	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
structural_annotation	UHGV-0190132_37	PF07352	N/A	N/A	N/A	N/A
Pfam	UHGV-0190132_40	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
PHROG	UHGV-0190132_43	phrog_9607	65.3	1e-18	N/A	unknown function
UniRef90	UHGV-0190132_45	UniRef90_A0A841R1K3	74.7	2.51e-16	DNA-binding XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0190132_45	1321784.HMPREF1987_01097	57.0	0.000000000611	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0190132_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0190132_45	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0190132_45	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0190132_46	K01356	129.8	2.9e-38	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0190132_46	phrog_4	112.0	6.4e-33	transcriptional repressor	transcription regulation
UniRef90	UHGV-0190132_46	UniRef90_A0A1G6TQM1	192.0	0	Repressor LexA	N/A
eggNOG-mapper	UHGV-0190132_46	476272.RUMHYD_03305	164.0	0	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0190132_46	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0190132_46	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0190132_46	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0190132_46	PF00717,PF12844,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
PHROG	UHGV-0190132_47	phrog_1847	514.0	0	N/A	unknown function
UniRef90	UHGV-0190132_47	UniRef90_UPI001F2ACF6B	410.0	0	N/A	N/A
eggNOG-mapper	UHGV-0190132_47	1235798.C817_00618	366.0	0	N/A	N/A
Pfam	UHGV-0190132_47	PF13250	N/A	N/A	N/A	DUF4041
Pfam	UHGV-0190132_47	PF13455	N/A	N/A	Meiotically up-regulated gene 113	MUG113
COG	UHGV-0190132_47	COG0172	N/A	N/A	Seryl-tRNA synthetase	N/A
KOfam	UHGV-0190132_49	K14059	214.6	0	int; integrase	N/A
PHROG	UHGV-0190132_49	phrog_1	200.0	0	integrase	integration and excision
UniRef90	UHGV-0190132_49	UniRef90_A0A4P8KL88	172.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0190132_49	1158604.I591_01805	171.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0190132_49	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0190132_49	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0190132_49	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0190132_49	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0190132_49	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0190132	Yes	29,127	53	84	1