vOTU vOTU-141038

vOTU: vOTU-141038

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-141038
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → CAG-353 → CAG-353 sp900768995
Taxonomy (UHGV)	vFAM-00060 → vSUBFAM-00800 → vOTU-141038
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → CAG-353 → CAG-353 sp900066885
Host range breadth	Species
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0036719
Biosample ID	N/A
Genome length (bp)	17,688 bps
CheckV completeness	53.79% (Medium-quality)
CDS count	32
CDS density	93.57%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → CAG-353 → CAG-353 sp900066885	Total connections	31	Host agreement	80.65
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → CAG-353 → CAG-353 sp900768995	Total connections	6	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 53.79)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0036719_1	phrog_533	342.8	0	portal protein	head and packaging
UniRef90	UHGV-0036719_1	UniRef90_A0A1C6FMT2	805.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0036719_1	997296.PB1_16244	283.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0036719_1	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0036719_1	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0036719_2	K06909	112.7	4.4e-33	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0036719_2	phrog_2	124.4	1.3e-36	terminase large subunit	head and packaging
UniRef90	UHGV-0036719_2	UniRef90_A0A1C6FMV1	850.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0036719_2	1120998.AUFC01000030_gene2231	362.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0036719_2	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0036719_2	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0036719_2	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0036719_2	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0036719_3	phrog_36	62.2	1.1e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0036719_3	UniRef90_A0A4Z0XVP8	58.9	0.0000000302	RNA polymerase sigma factor SigO	N/A
eggNOG-mapper	UHGV-0036719_3	1265507.KB899636_gene1634	65.1	0.0000000000201	N/A	N/A
structural_annotation	UHGV-0036719_3	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0036719_4	PF11483	N/A	N/A	N/A	N/A
PHROG	UHGV-0036719_9	phrog_16304	84.6	1.5e-24	N/A	unknown function
UniRef90	UHGV-0036719_9	UniRef90_A0A1C6FNF0	232.0	0	N/A	N/A
Pfam	UHGV-0036719_9	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0036719_9	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0036719_10	K03111	109.3	5.8e-32	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0036719_10	phrog_44	120.1	2e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0036719_10	UniRef90_A0A1C6FN64	242.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0036719_10	1384066.JAGT01000001_gene1404	154.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0036719_10	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0036719_10	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0036719_10	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0036719_10	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0036719_10	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0036719_11	phrog_3490	146.3	1.4013e-43	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0036719_11	UniRef90_A0A1C6FNL5	287.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0036719_11	357809.Cphy_2986	182.0	0	N/A	N/A
Pfam	UHGV-0036719_11	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-0036719_11	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
PHROG	UHGV-0036719_12	phrog_1227	252.0	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0036719_12	UniRef90_UPI00041F978E	293.0	0	PD-(D/E)XK nuclease-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0036719_12	1120998.AUFC01000030_gene2216	293.0	0	N/A	N/A
Pfam	UHGV-0036719_12	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-0036719_12	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0036719_12	PF12684,TIGR01896,COG4343	N/A	N/A	N/A	N/A
KOfam	UHGV-0036719_13	K03546	42.5	0.0000000000033	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0036719_13	phrog_1499	295.3	0	N/A	unknown function
UniRef90	UHGV-0036719_13	UniRef90_A0A1C6FNE5	860.0	0	Chromosome segregation protein	N/A
eggNOG-mapper	UHGV-0036719_13	1120998.AUFC01000030_gene2215	609.0	0	DNA recombination	N/A
Pfam	UHGV-0036719_13	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0036719_13	COG0497	N/A	N/A	DNA repair ATPase RecN	N/A
structural_annotation	UHGV-0036719_13	PF11398,MF_00365,NF008121,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-0036719_14	phrog_561	150.5	7.00649e-45	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0036719_14	UniRef90_UPI0011C8A287	243.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-0036719_14	33035.JPJF01000071_gene4462	221.0	0	N/A	N/A
structural_annotation	UHGV-0036719_14	PF03837,TIGR01913	N/A	N/A	N/A	N/A
PHROG	UHGV-0036719_15	phrog_424	81.5	9.8e-24	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-0036719_15	445972.ANACOL_01819	427.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
COG	UHGV-0036719_15	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0036719_15	PF01507,MF_00064,TIGR00434,COG0175	N/A	N/A	N/A	N/A
Pfam	UHGV-0036719_17	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
eggNOG-mapper	UHGV-0036719_23	1291050.JAGE01000001_gene952	68.2	0.000000000000103	N/A	N/A
UniRef90	UHGV-0036719_27	UniRef90_UPI001F08BDD3	48.5	0.00000701	XRE family transcriptional regulator	N/A
structural_annotation	UHGV-0036719_27	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0036719_28	K07727	43.5	0.0000000000071	K07727; putative transcriptional regulator	N/A
UniRef90	UHGV-0036719_28	UniRef90_A0A1M5U4Q2	79.7	4.02e-16	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-0036719_28	887929.HMP0721_0588	80.1	3.58e-16	Cytoplasmic, score 8.87	N/A
Pfam	UHGV-0036719_28	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0036719_28	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-0036719_28	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0036719_29	phrog_1914	115.9	2.4e-34	N/A	unknown function
UniRef90	UHGV-0036719_29	UniRef90_R7FBB0	189.0	0	Putative toxin-antitoxin system toxin component	N/A
eggNOG-mapper	UHGV-0036719_29	1160721.RBI_I01604	155.0	1.4013e-45	N/A	N/A
Pfam	UHGV-0036719_29	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0036719_29	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0036719_29	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-0036719_30	phrog_17596	44.3	0.000000000003	N/A	unknown function
eggNOG-mapper	UHGV-0036719_30	1462527.CCDM010000001_gene1872	107.0	4.95e-22	N/A	N/A
KOfam	UHGV-0036719_32	K06400	80.6	2.2e-23	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0036719_32	phrog_95	68.0	1.3e-19	integrase	integration and excision
UniRef90	UHGV-0036719_32	UniRef90_A0A564UPK9	89.0	5.75e-22	Resolvase/invertase-type recombinase catalytic domain-containing protein	N/A
eggNOG-mapper	UHGV-0036719_32	1235835.C814_00825	94.4	7.26e-22	Resolvase, N terminal domain	N/A
Pfam	UHGV-0036719_32	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0036719_32	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0036719	Yes	17,688	44	54	1