vOTU vOTU-141161

vOTU: vOTU-141161

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-141161
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-04167 → vOTU-141161
Host lineage	Bacteria → Firmicutes_A
Host range breadth	Phylum
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1376870
Biosample ID	SAMEA2738161
Genome length (bp)	23,293 bps
CheckV completeness	69.23% (Medium-quality)
CDS count	38
CDS density	93.36%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A	Total connections	4	Host agreement	50
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 69.23)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1376870_1	phrog_2270	736.1	0	N/A	unknown function
UniRef90	UHGV-1376870_1	UniRef90_A0A081PN56	841.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1376870_1	1054460.SPPN_00455	619.0	0	N/A	N/A
Pfam	UHGV-1376870_1	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1376870_1	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1376870_1	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1376870_1	PF14594,PF13620,TIGR01665,TIGR04183,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1376870_2	phrog_33	67.3	3.8e-19	distal tail protein Dit	tail
UniRef90	UHGV-1376870_2	UniRef90_V8IJG6	406.0	0	Adenylosuccinate synthetase	N/A
eggNOG-mapper	UHGV-1376870_2	1054460.SPPN_00450	406.0	0	N/A	N/A
COG	UHGV-1376870_2	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1376870_2	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1376870_3	phrog_6900	271.4	0	tail length tape measure protein	tail
UniRef90	UHGV-1376870_3	UniRef90_UPI001C3E4479	636.0	0	PblA	N/A
eggNOG-mapper	UHGV-1376870_3	585203.SMSK564_1276	424.0	0	phage tail tape measure protein	N/A
COG	UHGV-1376870_3	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1376870_3	PF20155,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-1376870_4	phrog_1633	166.9	0	N/A	unknown function
UniRef90	UHGV-1376870_4	UniRef90_UPI001C3C9BD5	240.0	0	N/A	N/A
eggNOG-mapper	UHGV-1376870_4	1121864.OMO_02160	136.0	6.7e-40	N/A	N/A
Pfam	UHGV-1376870_4	PF17318	N/A	N/A	N/A	DUF5361
structural_annotation	UHGV-1376870_4	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-1376870_5	phrog_1526	68.0	1.4e-19	N/A	unknown function
eggNOG-mapper	UHGV-1376870_5	1231377.C426_1729	58.5	0.000000000329	N/A	N/A
PHROG	UHGV-1376870_6	phrog_117	148.7	2.94273e-44	major tail protein	tail
UniRef90	UHGV-1376870_6	UniRef90_UPI0008A29B99	334.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1376870_6	1321820.HMPREF1983_00927	223.0	0	domain, Protein	N/A
COG	UHGV-1376870_6	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1376870_6	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1376870_7	phrog_123	46.9	0.00000000000055	tail terminator	connector
UniRef90	UHGV-1376870_7	UniRef90_D2BQF4	124.0	1.6e-34	N/A	N/A
eggNOG-mapper	UHGV-1376870_7	1231377.C426_1732	124.0	1.89e-35	N/A	N/A
structural_annotation	UHGV-1376870_7	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-1376870_8	phrog_387	91.9	4.5e-27	neck protein	connector
eggNOG-mapper	UHGV-1376870_8	883110.HMPREF9260_00655	87.4	8.26e-22	N/A	N/A
PHROG	UHGV-1376870_9	phrog_501	89.0	4.5e-26	head closure Hc1	connector
UniRef90	UHGV-1376870_9	UniRef90_A0A0E3WFP3	142.0	1.15999e-41	N/A	N/A
eggNOG-mapper	UHGV-1376870_9	938288.HG326226_gene865	153.0	0	N/A	N/A
structural_annotation	UHGV-1376870_9	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1376870_10	phrog_137	120.9	5.7e-36	head-tail adaptor Ad1	connector
UniRef90	UHGV-1376870_10	UniRef90_UPI001C3E6F4D	247.0	0	phage Gp19/Gp15/Gp42 family protein	N/A
eggNOG-mapper	UHGV-1376870_10	1321372.AQQB01000060_gene65	162.0	0	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-1376870_10	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-1376870_10	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-1376870_12	phrog_32396	130.0	6.1e-39	N/A	unknown function
UniRef90	UHGV-1376870_12	UniRef90_UPI001C3D4F73	476.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1376870_12	1121864.OMO_02152	371.0	0	Phage capsid family	N/A
Pfam	UHGV-1376870_12	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1376870_12	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-1376870_12	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1376870_13	phrog_233	95.1	1.2e-27	head scaffolding protein	head and packaging
UniRef90	UHGV-1376870_13	UniRef90_UPI001C3E7F43	264.0	0	N/A	N/A
eggNOG-mapper	UHGV-1376870_13	768726.HMPREF9178_1064	101.0	2.61e-25	N/A	N/A
Pfam	UHGV-1376870_13	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-1376870_13	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1376870_14	phrog_17688	500.5	0	N/A	unknown function
UniRef90	UHGV-1376870_14	UniRef90_UPI001C3D0FBE	908.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-1376870_14	585203.SMSK564_1286	833.0	0	phage terminase, large subunit	N/A
COG	UHGV-1376870_14	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1376870_14	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1376870_15	phrog_2494	368.7	0	minor head protein	head and packaging
UniRef90	UHGV-1376870_15	UniRef90_A0A3A4S450	285.0	0	Ntox50 domain-containing protein	N/A
eggNOG-mapper	UHGV-1376870_15	1289595.M1PF56_9VIRU	261.0	0	N/A	N/A
PHROG	UHGV-1376870_16	phrog_104	289.7	0	portal protein	head and packaging
UniRef90	UHGV-1376870_16	UniRef90_UPI001C3C779D	927.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1376870_16	1321820.HMPREF1983_00937	625.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-1376870_16	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1376870_17	phrog_17283	110.0	8.2e-33	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1376870_17	UniRef90_UPI0008A113AF	233.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1376870_17	43685.Q38112_BPR1T	181.0	0	HNH endonuclease	N/A
Pfam	UHGV-1376870_17	PF01844	N/A	N/A	HNH endonuclease	HNH
structural_annotation	UHGV-1376870_17	PF01844,COG1403	N/A	N/A	N/A	N/A
KOfam	UHGV-1376870_18	K04763	99.4	4.9e-29	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1376870_18	phrog_216	177.3	0	integrase	integration and excision
UniRef90	UHGV-1376870_18	UniRef90_A0A420YQN1	332.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1376870_18	638301.HMPREF0444_1512	255.0	0	Phage integrase family	N/A
Pfam	UHGV-1376870_18	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1376870_18	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1376870_18	PF00589,MF_02055,NF040815,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-1376870_19	phrog_248	104.4	1.2e-30	transcriptional activator	transcription regulation
UniRef90	UHGV-1376870_19	UniRef90_W1TSX5	117.0	1.16e-30	Phage encoded transcriptional regulator, ArpU family protein	N/A
eggNOG-mapper	UHGV-1376870_19	1403946.Q615_SPAC00127G0144	117.0	1.95e-31	Transcriptional regulator, ArpU family	N/A
NCBIFam	UHGV-1376870_19	TIGR01637.1	N/A	N/A	ArpU family phage packaging/lysis transcriptional regulator	N/A
structural_annotation	UHGV-1376870_19	PF07374,TIGR01637	N/A	N/A	N/A	N/A
KOfam	UHGV-1376870_20	K03111	129.6	4.1e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1376870_20	phrog_44	138.5	4.60004e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1376870_20	UniRef90_UPI0008A2AE40	239.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1376870_20	638301.HMPREF0444_1514	188.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1376870_20	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1376870_20	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1376870_20	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1376870_20	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1376870_20	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1376870_21	phrog_2113	64.7	1.1e-18	N/A	unknown function
UniRef90	UHGV-1376870_21	UniRef90_A0A218MNC1	125.0	4e-35	HTH_11 domain-containing protein	N/A
eggNOG-mapper	UHGV-1376870_21	638301.HMPREF0444_1515	189.0	0	N/A	N/A
structural_annotation	UHGV-1376870_21	PF11994,MF_01177,TIGR02944,COG1959	N/A	N/A	N/A	N/A
KOfam	UHGV-1376870_22	K06191	84.6	1.4e-24	nrdH; glutaredoxin-like protein NrdH	N/A
PHROG	UHGV-1376870_22	phrog_22	57.4	3e-16	thioredoxin domain	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1376870_22	UniRef90_C8NHX1	140.0	3.27063e-42	Glutaredoxin-like protein NrdH	N/A
eggNOG-mapper	UHGV-1376870_22	638301.HMPREF0444_1516	140.0	5.47908e-43	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins	N/A
Pfam	UHGV-1376870_22	PF00462	N/A	N/A	Glutaredoxin	Glutaredoxin
COG	UHGV-1376870_22	COG0695	N/A	N/A	Glutaredoxin	N/A
structural_annotation	UHGV-1376870_22	PF00462,MF_01132,NF007657,COG0695	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1376870_23	PF06372,NF033216,COG4568	N/A	N/A	N/A	N/A
PHROG	UHGV-1376870_27	phrog_236	75.7	1.2e-21	nucleotide kinase	other
UniRef90	UHGV-1376870_27	UniRef90_UPI0008A255A2	280.0	0	N/A	N/A
eggNOG-mapper	UHGV-1376870_27	442493.A8E2B0_BPPHE	52.0	0.0000034	N/A	N/A
Pfam	UHGV-1376870_27	PF11753	N/A	N/A	N/A	DUF3310
structural_annotation	UHGV-1376870_28	NF007271	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1376870_29	1423724.BAMM01000020_gene1810	50.1	0.00000564	N/A	N/A
KOfam	UHGV-1376870_30	K02314	243.8	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1376870_30	phrog_19	226.6	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1376870_30	UniRef90_C8NHY3	748.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-1376870_30	638301.HMPREF0444_1528	748.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1376870_30	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-1376870_30	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1376870_30	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1376870_30	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-1376870_31	phrog_428	171.5	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1376870_31	UniRef90_UPI0008A661CE	435.0	0	conserved phage C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1376870_31	638301.HMPREF0444_1529	362.0	0	Conserved phage C-terminus (Phg_2220_C)	N/A
Pfam	UHGV-1376870_31	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-1376870_31	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-1376870_31	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1376870_31	PF09524,PF08679,MF_01909,TIGR02220,NF040939,COG1675	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1376870_32	PF11184,COG4703	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1376870_34	MF_01155	N/A	N/A	N/A	N/A
KOfam	UHGV-1376870_35	K22299	56.9	5.4e-16	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1376870_35	phrog_5823	52.0	0.000000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-1376870_35	UniRef90_A0A420YQR0	98.6	7.25e-26	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1376870_35	1120978.KB894087_gene408	58.9	0.0000000000602	Cro/C1-type HTH DNA-binding domain	N/A
PADLOC	UHGV-1376870_35	retron_type_VI_hth_cluster2_1	42.3	0.000000000022	N/A	Retron
Pfam	UHGV-1376870_35	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1376870_35	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1376870_36	K01356	90.5	2e-26	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1376870_36	phrog_4	99.2	5.9e-29	transcriptional repressor	transcription regulation
UniRef90	UHGV-1376870_36	UniRef90_UPI00066023D1	303.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1376870_36	1120978.KB894087_gene406	142.0	7.21e-39	Peptidase S24-like	N/A
Pfam	UHGV-1376870_36	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1376870_36	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1376870_36	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-1376870_36	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1376870_37	UniRef90_UPI001D14D191	60.1	0.00000000292	HIRAN domain-containing protein	N/A
Pfam	UHGV-1376870_37	PF08797	N/A	N/A	HIRAN domain	HIRAN
KOfam	UHGV-1376870_38	K14059	211.2	0	int; integrase	N/A
PHROG	UHGV-1376870_38	phrog_1	217.8	0	integrase	integration and excision
UniRef90	UHGV-1376870_38	UniRef90_UPI0008A498FC	642.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1376870_38	1295642.H839_16163	265.0	0	Pfam:Integrase_AP2	N/A
Pfam	UHGV-1376870_38	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-1376870_38	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
Pfam	UHGV-1376870_38	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1376870_38	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1376870_38	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1376870	Yes	23,293	38	69	1