vOTU vOTU-141446

vOTU: vOTU-141446

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-141446
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00011 → vSUBFAM-07423 → vGENUS-20555 → vOTU-141446
Host lineage	Bacteria → Firmicutes → Bacilli → Staphylococcales → Gemellaceae → Gemella → Gemella sp002871655
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1461162
Biosample ID	N/A
Genome length (bp)	23,978 bps
CheckV completeness	55.56% (Medium-quality)
CDS count	29
CDS density	94.32%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Staphylococcales → Gemellaceae → Gemella → Gemella sp002871655	Total connections	7	Host agreement	85.71
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 55.56)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1461162_2	phrog_98	54.0	0.0000000000000028	N/A	unknown function
UniRef90	UHGV-1461162_2	UniRef90_A0A6H1EY67	265.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1461162_2	1321820.HMPREF1983_00941	60.8	0.000000000488	YopX protein	N/A
Pfam	UHGV-1461162_2	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-1461162_2	PF09643,TIGR01671	N/A	N/A	N/A	N/A
UniRef90	UHGV-1461162_5	UniRef90_UPI001A470AE5	181.0	0	med21 domain-containing protein	N/A
eggNOG-mapper	UHGV-1461162_5	562981.HMPREF0428_01830	191.0	0	N/A	N/A
eggNOG-mapper	UHGV-1461162_7	1158614.I592_01110	49.3	0.00000745	YopX protein	N/A
Pfam	UHGV-1461162_7	PF09643	N/A	N/A	YopX protein	YopX
PHROG	UHGV-1461162_8	phrog_36	46.0	0.0000000000011	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-1461162_8	1211035.CD30_08135	56.2	0.0000000492	N/A	N/A
Pfam	UHGV-1461162_8	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-1461162_8	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
KOfam	UHGV-1461162_9	K07474	103.2	5.1e-30	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1461162_9	phrog_51	117.3	1.3e-34	terminase small subunit	head and packaging
UniRef90	UHGV-1461162_9	UniRef90_UPI00195C156A	230.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-1461162_9	764561.D7RWC4_9CAUD	149.0	4.06377e-44	Terminase small subunit	N/A
Pfam	UHGV-1461162_9	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
structural_annotation	UHGV-1461162_9	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-1461162_10	K06909	81.2	1.4e-23	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1461162_10	phrog_2	67.0	4e-19	terminase large subunit	head and packaging
UniRef90	UHGV-1461162_10	UniRef90_UPI0019579379	944.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-1461162_10	1123315.AUIP01000003_gene234	695.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1461162_10	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1461162_10	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1461162_10	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1461162_11	phrog_64	410.9	0	portal protein	head and packaging
UniRef90	UHGV-1461162_11	UniRef90_UPI0019562DC3	1014.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1461162_11	663952.SDD27957_09170	565.0	0	Phage portal protein, SPP1 family	N/A
Pfam	UHGV-1461162_11	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-1461162_11	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-1461162_11	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-1461162_12	phrog_115	305.7	0	minor head protein	head and packaging
UniRef90	UHGV-1461162_12	UniRef90_UPI0019573A4B	1127.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1461162_12	1123315.AUIP01000003_gene236	296.0	0	head morphogenesis protein, SPP1 gp7 family	N/A
Pfam	UHGV-1461162_12	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
Pfam	UHGV-1461162_12	PF18818	N/A	N/A	Zincin-like metallopeptidase	MPTase-PolyVal
NCBIFam	UHGV-1461162_12	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-1461162_12	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1461162_14	phrog_172	112.2	5.2e-33	head scaffolding protein	head and packaging
UniRef90	UHGV-1461162_14	UniRef90_UPI00195EC086	345.0	0	N/A	N/A
eggNOG-mapper	UHGV-1461162_14	1123315.AUIP01000003_gene242	111.0	4.76e-28	N/A	N/A
Pfam	UHGV-1461162_14	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-1461162_14	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1461162_15	phrog_909	89.6	2.6e-26	major head protein	head and packaging
UniRef90	UHGV-1461162_15	UniRef90_A0A4D6A2S3	184.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-1461162_15	1123302.KB904182_gene70	184.0	0	N/A	N/A
structural_annotation	UHGV-1461162_15	PF02924	N/A	N/A	N/A	N/A
PHROG	UHGV-1461162_16	phrog_29	226.4	0	major head protein	head and packaging
UniRef90	UHGV-1461162_16	UniRef90_UPI001957DD3A	608.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-1461162_16	1123302.KB904182_gene69	437.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1461162_16	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1461162_16	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1461162_17	phrog_132	78.7	6e-23	head-tail adaptor	connector
UniRef90	UHGV-1461162_17	UniRef90_UPI000C7F9E37	228.0	0	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-1461162_17	1123302.KB904182_gene68	117.0	8.74e-33	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-1461162_17	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-1461162_17	PF05135	N/A	N/A	N/A	N/A
PHROG	UHGV-1461162_18	phrog_348	71.9	8.8e-21	minor head protein	head and packaging
UniRef90	UHGV-1461162_18	UniRef90_A0A380JX45	98.2	1.44e-24	N/A	N/A
eggNOG-mapper	UHGV-1461162_18	663952.SDD27957_09115	101.0	1.65e-26	N/A	N/A
structural_annotation	UHGV-1461162_18	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1461162_19	phrog_5	67.3	3.6e-19	tail completion or Neck1 protein	connector
UniRef90	UHGV-1461162_19	UniRef90_UPI0019593F93	202.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1461162_19	883081.HMPREF9698_01611	102.0	7.59e-27	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1461162_19	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-1461162_19	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1461162_19	PF05069,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1461162_20	phrog_176	123.1	1.3e-36	tail terminator	connector
UniRef90	UHGV-1461162_20	UniRef90_UPI00195CDF4B	254.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-1461162_20	663241.C9E2J9_9CAUD	177.0	0	N/A	N/A
structural_annotation	UHGV-1461162_20	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-1461162_21	phrog_238	200.2	0	major tail protein	tail
UniRef90	UHGV-1461162_21	UniRef90_UPI00195CDFE0	324.0	0	phage major tail protein, TP901-1 family	N/A
eggNOG-mapper	UHGV-1461162_21	764561.D7RWD5_9CAUD	215.0	0	Phage major tail protein 2	N/A
Pfam	UHGV-1461162_21	PF06199	N/A	N/A	Phage tail tube protein	Phage_tail_2
NCBIFam	UHGV-1461162_21	TIGR02126.1	N/A	N/A	phage major tail protein, TP901-1 family	N/A
structural_annotation	UHGV-1461162_21	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1461162_22	phrog_441	85.5	7.1e-25	tail assembly chaperone	tail
UniRef90	UHGV-1461162_22	UniRef90_UPI0019577594	217.0	0	tail assembly chaperone	N/A
eggNOG-mapper	UHGV-1461162_22	1095737.HMPREF1110_1743	116.0	2.85e-32	Phage tail assembly chaperone protein, TAC	N/A
Pfam	UHGV-1461162_22	PF12363	N/A	N/A	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
structural_annotation	UHGV-1461162_22	PF12363	N/A	N/A	N/A	N/A
PHROG	UHGV-1461162_23	phrog_58	199.2	0	tail length tape measure protein	tail
UniRef90	UHGV-1461162_23	UniRef90_UPI00195F12AA	964.0	0	tape measure protein	N/A
eggNOG-mapper	UHGV-1461162_23	1399942.U3PFW9_9CAUD	339.0	0	N-acetylmuramoyl-L-alanine amidase activity	N/A
Pfam	UHGV-1461162_23	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1461162_23	TIGR02675.1	N/A	N/A	tape measure protein	N/A
structural_annotation	UHGV-1461162_23	PF20155,TIGR02675,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1461162_24	phrog_202	99.6	2.3e-29	distal tail protein Dit	tail
UniRef90	UHGV-1461162_24	UniRef90_UPI00195821E5	477.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-1461162_24	1123315.AUIP01000003_gene254	205.0	0	Phage tail protein	N/A
Pfam	UHGV-1461162_24	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-1461162_24	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-1461162_24	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1461162_24	PF05709,PF20753,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1461162_25	phrog_12312	220.7	0	virion structural protein	head and packaging
UniRef90	UHGV-1461162_25	UniRef90_UPI00195A94EB	1532.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1461162_25	1123315.AUIP01000003_gene255	600.0	0	heme binding	N/A
Pfam	UHGV-1461162_25	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-1461162_25	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
NCBIFam	UHGV-1461162_25	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1461162_25	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1461162_25	PF14594,PF00629,TIGR01665,NF033675,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1461162_26	phrog_1060	59.2	3.9e-17	N/A	unknown function
UniRef90	UHGV-1461162_26	UniRef90_A0A420YQX1	190.0	0	N/A	N/A
eggNOG-mapper	UHGV-1461162_26	1321820.HMPREF1983_00919	53.9	0.000000492	N/A	N/A
Pfam	UHGV-1461162_26	PF07104	N/A	N/A	N/A	DUF1366
structural_annotation	UHGV-1461162_26	PF07104,TIGR00638	N/A	N/A	N/A	N/A
PHROG	UHGV-1461162_28	phrog_199	59.6	4.1e-17	holin	lysis
UniRef90	UHGV-1461162_28	UniRef90_UPI00195EE93F	234.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-1461162_28	562981.HMPREF0428_01805	207.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-1461162_28	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1461162_28	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
structural_annotation	UHGV-1461162_28	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-1461162_29	phrog_32123	118.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1461162_29	1005705.HMPREF9967_1058	128.0	1.23e-28	domain, Protein	N/A
COG	UHGV-1461162_29	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1461162	Yes	23,978	32	56	1